==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 22-MAY-97 1AKK . COMPND 2 MOLECULE: CYTOCHROME C; . SOURCE 2 ORGANISM_SCIENTIFIC: EQUUS CABALLUS; . AUTHOR L.BANCI,I.BERTINI,H.B.GRAY,C.LUCHINAT,T.REDDIG,A.ROSATO, . 104 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7020.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 56.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 8.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 12 11.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 26.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 45 0, 0.0 92,-0.2 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 121.7 -12.0 8.4 7.9 2 2 A D > - 0 0 75 91,-0.3 4,-2.7 90,-0.3 95,-0.3 -0.808 360.0-152.6-164.7 125.6 -12.4 11.2 5.2 3 3 A V H > S+ 0 0 56 93,-0.3 4,-2.2 -2,-0.2 -1,-0.1 0.863 100.5 53.6 -60.2 -40.3 -11.7 11.1 1.4 4 4 A E H 4 S+ 0 0 158 2,-0.2 4,-0.5 1,-0.2 -1,-0.2 0.963 115.5 37.2 -65.8 -53.4 -11.0 14.9 1.5 5 5 A K H >4 S+ 0 0 142 1,-0.2 3,-1.3 2,-0.2 4,-0.5 0.939 117.3 52.8 -61.9 -47.3 -8.4 14.8 4.2 6 6 A G H >X S+ 0 0 0 -4,-2.7 4,-1.7 1,-0.3 3,-1.4 0.807 89.7 80.5 -60.8 -31.4 -7.1 11.5 2.8 7 7 A K T 3< S+ 0 0 120 -4,-2.2 4,-0.4 1,-0.3 -1,-0.3 0.799 107.1 26.9 -40.5 -43.5 -6.7 13.0 -0.7 8 8 A K T <> S+ 0 0 134 -3,-1.3 4,-1.3 -4,-0.5 -1,-0.3 0.394 111.0 70.4-107.5 0.1 -3.4 14.7 0.4 9 9 A I H <> S+ 0 0 32 -3,-1.4 4,-2.5 -4,-0.5 5,-0.2 0.917 95.8 51.3 -87.0 -46.8 -2.3 12.2 3.1 10 10 A F H X S+ 0 0 7 -4,-1.7 4,-2.8 2,-0.2 5,-0.3 0.965 115.3 41.7 -50.0 -58.8 -1.4 9.3 0.8 11 11 A V H > S+ 0 0 46 -4,-0.4 4,-3.0 -5,-0.3 5,-0.5 0.936 114.1 48.7 -66.9 -48.9 0.7 11.4 -1.4 12 12 A Q H < S+ 0 0 166 -4,-1.3 -1,-0.3 1,-0.2 -2,-0.2 0.857 119.2 43.1 -56.2 -36.1 2.5 13.4 1.3 13 13 A K H < S- 0 0 105 -4,-2.5 -2,-0.2 -5,-0.1 -1,-0.2 0.898 142.8 -16.1 -69.9 -41.2 3.2 10.0 3.0 14 14 A C H >X S+ 0 0 30 -4,-2.8 4,-1.1 -5,-0.2 3,-0.5 0.144 84.3 119.3-168.1 26.3 4.2 8.0 -0.0 15 15 A A T 3< + 0 0 35 -4,-3.0 -4,-0.1 -5,-0.3 -3,-0.1 0.854 69.8 75.5 -67.8 -34.6 3.4 9.2 -3.5 16 16 A Q T 34 S+ 0 0 138 -5,-0.5 -1,-0.2 1,-0.3 11,-0.1 0.808 111.1 26.5 -53.6 -33.4 7.0 9.3 -4.5 17 17 A C T <4 S+ 0 0 49 -3,-0.5 11,-0.8 11,-0.2 12,-0.6 0.679 124.6 49.6 -90.7 -28.3 7.0 5.4 -4.8 18 18 A H < - 0 0 33 -4,-1.1 2,-0.3 10,-0.1 13,-0.2 -0.834 53.3-159.7-133.6 157.0 3.3 4.9 -5.6 19 19 A T - 0 0 7 11,-0.4 13,-2.8 -2,-0.3 4,-0.1 -0.845 11.5-157.5-126.3 157.7 0.3 6.0 -7.8 20 20 A V S S- 0 0 27 2,-0.3 3,-0.1 -2,-0.3 -1,-0.1 0.442 88.9 -22.7-111.4 -10.3 -3.5 5.6 -7.2 21 21 A E S S- 0 0 113 1,-0.3 2,-0.2 3,-0.1 12,-0.1 0.207 115.3 -17.1-158.4 -61.2 -4.5 5.8 -11.0 22 22 A K S S+ 0 0 153 3,-0.0 2,-2.2 11,-0.0 -1,-0.3 -0.885 98.0 46.5-153.7 172.1 -2.0 7.6 -13.3 23 23 A G S S+ 0 0 66 -2,-0.2 2,-0.2 -4,-0.1 -4,-0.1 -0.377 86.0 92.6 82.5 -61.8 1.0 9.9 -13.7 24 24 A G - 0 0 37 -2,-2.2 2,-0.2 1,-0.1 -5,-0.1 -0.471 69.8-148.5 -63.8 134.5 3.1 8.2 -11.0 25 25 A K - 0 0 165 -2,-0.2 2,-2.7 -7,-0.1 3,-0.4 -0.590 30.6 -83.6-108.8 166.2 5.3 5.6 -12.6 26 26 A H S S+ 0 0 80 1,-0.2 -8,-0.1 -2,-0.2 -9,-0.1 -0.385 75.1 134.8 -70.7 68.2 6.8 2.2 -11.4 27 27 A K S S- 0 0 131 -2,-2.7 -1,-0.2 2,-0.4 -10,-0.1 0.948 90.4 -31.9 -76.5 -63.6 9.8 3.8 -9.6 28 28 A T S S+ 0 0 69 -11,-0.8 -11,-0.2 -3,-0.4 -10,-0.1 0.128 130.2 44.0-152.9 21.2 9.7 1.9 -6.3 29 29 A G S S- 0 0 2 -12,-0.6 -2,-0.4 -4,-0.2 -1,-0.3 -0.932 81.1-109.7-165.5 145.0 6.0 1.1 -5.7 30 30 A P - 0 0 28 0, 0.0 2,-0.6 0, 0.0 -11,-0.4 -0.566 37.3 -98.7 -82.4 149.1 3.2 -0.1 -7.9 31 31 A N - 0 0 28 13,-0.2 2,-2.4 -2,-0.2 -11,-0.2 -0.550 32.5-143.5 -65.3 107.7 0.2 1.9 -9.1 32 32 A L + 0 0 35 -13,-2.8 3,-0.2 -2,-0.6 -1,-0.1 -0.326 45.9 146.3 -78.2 59.8 -2.6 0.9 -6.7 33 33 A H S S+ 0 0 94 -2,-2.4 -1,-0.2 1,-0.2 2,-0.2 0.361 72.4 27.8 -80.0 6.2 -5.4 1.1 -9.3 34 34 A G S S+ 0 0 16 -3,-0.1 -1,-0.2 5,-0.1 2,-0.1 -0.633 70.3 139.5-170.9 100.8 -7.3 -1.8 -7.6 35 35 A L > + 0 0 16 67,-0.2 3,-2.3 -3,-0.2 25,-0.1 -0.109 46.4 68.5-111.7-146.7 -7.1 -2.8 -3.9 36 36 A F T 3 S+ 0 0 49 1,-0.3 24,-0.2 -2,-0.1 -1,-0.1 0.714 123.5 11.7 43.6 58.7 -10.0 -4.0 -1.6 37 37 A G T 3 S+ 0 0 51 22,-2.2 -1,-0.3 1,-0.8 23,-0.1 -0.245 106.9 103.2 127.2 -42.8 -10.7 -7.4 -3.2 38 38 A R S < S- 0 0 142 -3,-2.3 21,-3.1 20,-0.1 -1,-0.8 -0.302 76.6-103.2 -63.9 158.9 -7.6 -7.5 -5.4 39 39 A K B -A 58 0A 131 19,-0.3 19,-0.2 3,-0.1 -1,-0.1 -0.148 19.8-110.5 -79.5 173.0 -4.8 -9.7 -4.1 40 40 A T S S+ 0 0 8 17,-1.9 16,-0.2 1,-0.2 13,-0.1 0.700 98.0 23.5 -61.8-124.7 -1.4 -9.1 -2.4 41 41 A G S S+ 0 0 9 14,-1.0 -1,-0.2 11,-1.0 -2,-0.0 -0.260 89.1 92.3 -53.3 133.8 1.5 -9.9 -4.8 42 42 A Q + 0 0 139 -3,-0.1 -1,-0.1 -4,-0.0 -3,-0.1 0.291 54.4 179.8 140.1 52.6 0.4 -9.7 -8.5 43 43 A A > - 0 0 24 1,-0.1 2,-0.9 3,-0.1 3,-0.7 -0.539 37.1-105.9 -78.3 141.9 1.2 -6.0 -9.3 44 44 A P T 3 S- 0 0 64 0, 0.0 -13,-0.2 0, 0.0 -1,-0.1 -0.560 93.8 -23.2 -73.4 102.8 0.5 -4.8 -12.9 45 45 A G T 3 S+ 0 0 72 -2,-0.9 2,-0.3 1,-0.2 -19,-0.1 0.975 110.1 118.3 62.7 59.6 3.9 -4.6 -14.7 46 46 A F < - 0 0 45 -3,-0.7 2,-0.4 -16,-0.1 -1,-0.2 -0.920 63.3-124.3-150.3 169.1 6.1 -4.3 -11.6 47 47 A T + 0 0 121 -2,-0.3 2,-0.1 -21,-0.1 0, 0.0 -0.775 34.8 172.0-129.2 77.0 8.9 -6.1 -9.8 48 48 A Y - 0 0 69 -2,-0.4 2,-0.2 1,-0.1 30,-0.0 -0.365 38.5 -98.3 -73.6 164.6 8.0 -6.9 -6.2 49 49 A T >> - 0 0 46 1,-0.1 4,-2.2 -2,-0.1 3,-0.7 -0.515 32.5-108.0 -79.5 158.0 10.1 -9.1 -4.0 50 50 A D H 3> S+ 0 0 92 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.720 116.0 71.6 -57.1 -21.1 9.3 -12.8 -3.5 51 51 A A H 3> S+ 0 0 33 26,-0.4 4,-0.9 2,-0.2 -1,-0.2 0.969 105.7 34.9 -60.3 -51.7 8.3 -11.8 0.1 52 52 A N H X4 S+ 0 0 29 -3,-0.7 -11,-1.0 1,-0.2 3,-1.0 0.935 114.8 59.1 -67.3 -42.7 5.2 -10.0 -1.2 53 53 A K H 3< S+ 0 0 114 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.863 101.5 54.6 -47.9 -45.6 4.8 -12.7 -3.9 54 54 A N H 3< S+ 0 0 138 -4,-2.5 2,-0.4 -5,-0.2 -1,-0.3 0.812 91.1 85.9 -60.7 -34.0 4.5 -15.3 -1.2 55 55 A K << + 0 0 68 -3,-1.0 -14,-1.0 -4,-0.9 20,-0.0 -0.615 56.3 170.5 -73.3 128.5 1.6 -13.3 0.3 56 56 A G + 0 0 64 -2,-0.4 2,-0.2 -16,-0.2 -1,-0.1 -0.493 31.8 98.6-149.2 58.6 -1.5 -14.5 -1.5 57 57 A I S S- 0 0 70 -19,-0.0 -17,-1.9 -2,-0.0 2,-0.3 -0.773 78.0 -72.8-133.7 178.9 -4.6 -13.1 0.1 58 58 A T B -A 39 0A 53 -19,-0.2 2,-0.3 -2,-0.2 -19,-0.3 -0.614 38.8-130.3 -73.1 135.0 -7.0 -10.2 -0.6 59 59 A W + 0 0 23 -21,-3.1 -22,-2.2 -2,-0.3 2,-0.3 -0.662 46.0 153.9 -69.9 146.0 -5.8 -6.7 0.2 60 60 A K > - 0 0 84 -2,-0.3 4,-2.8 -24,-0.2 3,-0.4 -0.932 60.5 -96.2-171.2 157.7 -8.5 -5.1 2.2 61 61 A E H > S+ 0 0 77 -2,-0.3 4,-2.7 1,-0.2 5,-0.2 0.880 122.6 58.8 -54.8 -43.1 -8.9 -2.3 4.8 62 62 A E H > S+ 0 0 112 1,-0.2 4,-1.0 2,-0.2 -1,-0.2 0.918 113.3 37.2 -46.4 -54.4 -8.7 -5.0 7.6 63 63 A T H > S+ 0 0 19 -3,-0.4 4,-2.3 1,-0.2 -2,-0.2 0.859 112.8 58.8 -70.8 -39.6 -5.3 -6.1 6.3 64 64 A L H X S+ 0 0 15 -4,-2.8 4,-2.7 2,-0.2 5,-0.3 0.908 97.1 60.4 -60.7 -41.0 -4.1 -2.6 5.5 65 65 A M H X S+ 0 0 71 -4,-2.7 4,-2.8 1,-0.2 5,-0.2 0.940 110.2 41.8 -54.4 -49.0 -4.6 -1.4 9.1 66 66 A E H X S+ 0 0 68 -4,-1.0 4,-2.6 1,-0.2 -1,-0.2 0.946 116.6 49.6 -52.6 -54.8 -2.0 -3.9 10.3 67 67 A Y H < S+ 0 0 24 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.781 115.0 42.2 -62.5 -32.9 0.2 -3.2 7.3 68 68 A L H < S+ 0 0 11 -4,-2.7 17,-0.3 2,-0.2 -1,-0.2 0.876 111.0 54.2 -84.9 -41.9 0.1 0.6 7.8 69 69 A E H < S- 0 0 96 -4,-2.8 16,-0.3 -5,-0.3 -2,-0.2 0.951 142.1 -18.1 -53.3 -50.6 0.5 0.5 11.6 70 70 A N >< - 0 0 63 -4,-2.6 3,-1.8 -5,-0.2 -2,-0.2 -0.573 56.7-172.8-161.1 95.6 3.6 -1.6 11.0 71 71 A P G >> S+ 0 0 4 0, 0.0 4,-3.0 0, 0.0 3,-2.2 0.827 89.2 67.2 -63.2 -27.4 4.4 -3.4 7.6 72 72 A K G 34 S+ 0 0 138 1,-0.3 5,-0.1 10,-0.2 -5,-0.1 0.827 92.6 61.5 -57.0 -31.5 7.3 -5.1 9.3 73 73 A K G <4 S+ 0 0 129 -3,-1.8 -1,-0.3 -7,-0.2 -6,-0.1 0.561 121.6 19.9 -71.6 -8.9 4.8 -6.9 11.5 74 74 A Y T <4 S+ 0 0 71 -3,-2.2 -2,-0.2 -4,-0.2 -1,-0.1 0.676 141.4 8.1-130.1 -48.6 3.3 -8.5 8.3 75 75 A I < + 0 0 8 -4,-3.0 3,-0.4 -8,-0.1 -2,-0.2 -0.686 67.5 154.2-140.2 81.5 5.7 -8.5 5.3 76 76 A P + 0 0 88 0, 0.0 2,-1.5 0, 0.0 -4,-0.1 0.865 65.3 66.2 -83.2 -36.3 9.2 -7.2 6.5 77 77 A G S S+ 0 0 60 -5,-0.1 -26,-0.4 -26,-0.1 2,-0.3 -0.103 84.6 109.6 -76.9 40.6 11.5 -8.9 3.9 78 78 A T S S- 0 0 22 -2,-1.5 -3,-0.0 -3,-0.4 -30,-0.0 -0.868 82.3-117.5-125.0 145.2 9.8 -6.6 1.4 79 79 A K S S+ 0 0 131 -2,-0.3 2,-1.9 1,-0.1 -2,-0.0 0.638 84.5 106.6 -65.8 -16.0 11.4 -3.6 -0.4 80 80 A M - 0 0 55 1,-0.1 2,-2.4 -9,-0.0 -1,-0.1 -0.450 47.7-175.7 -67.2 81.9 8.9 -1.1 1.2 81 81 A I + 0 0 161 -2,-1.9 2,-0.3 -10,-0.0 -1,-0.1 -0.262 24.2 159.8 -72.4 53.7 11.2 0.6 3.8 82 82 A F - 0 0 33 -2,-2.4 -10,-0.2 1,-0.1 -68,-0.0 -0.671 28.6-157.7 -85.1 132.6 8.1 2.5 5.0 83 83 A A - 0 0 87 -2,-0.3 2,-0.3 1,-0.3 -1,-0.1 0.987 42.7 -70.7 -78.7 -66.6 8.5 3.9 8.6 84 84 A G - 0 0 33 -14,-0.1 -1,-0.3 -13,-0.1 2,-0.2 -0.962 33.5-136.5 174.1 171.4 5.0 4.5 10.2 85 85 A I - 0 0 29 -16,-0.3 6,-0.0 -17,-0.3 -17,-0.0 -0.670 50.7 -62.3-142.1-179.0 1.9 6.6 10.2 86 86 A K - 0 0 101 -2,-0.2 -1,-0.0 1,-0.1 -17,-0.0 0.883 67.7-121.4 -42.1 -77.6 -0.6 8.2 12.8 87 87 A K S S+ 0 0 151 -3,-0.0 -1,-0.1 -22,-0.0 4,-0.1 -0.230 76.9 0.6 177.2 -59.4 -1.8 5.1 14.6 88 88 A K S S+ 0 0 155 2,-0.1 -19,-0.0 -19,-0.0 -2,-0.0 0.606 126.9 50.7-133.2 -33.7 -5.5 4.4 14.6 89 89 A T S >> S+ 0 0 75 1,-0.1 4,-2.5 2,-0.1 3,-2.2 0.801 100.3 70.4 -76.9 -34.8 -7.2 7.1 12.6 90 90 A E H 3>>S+ 0 0 1 1,-0.3 4,-2.4 2,-0.2 5,-0.8 0.889 89.4 57.9 -47.4 -49.0 -4.7 6.5 9.8 91 91 A R H 345S+ 0 0 91 1,-0.3 -1,-0.3 2,-0.2 -26,-0.2 0.390 115.7 38.8 -70.2 0.3 -6.2 3.2 8.8 92 92 A E H <>5S+ 0 0 92 -3,-2.2 4,-1.7 3,-0.1 -90,-0.3 0.644 118.8 45.0-109.3 -45.2 -9.5 5.1 8.3 93 93 A D H X5S+ 0 0 10 -4,-2.5 4,-1.8 -92,-0.2 -91,-0.3 0.962 119.3 37.6 -73.0 -54.3 -8.2 8.3 6.7 94 94 A L H X5S+ 0 0 7 -4,-2.4 4,-2.7 1,-0.2 3,-0.2 0.954 121.8 47.5 -61.1 -47.8 -5.7 6.9 4.2 95 95 A I H >X S+ 0 0 22 -4,-1.8 4,-2.5 -95,-0.3 3,-1.5 0.953 117.3 47.1 -68.3 -54.6 -9.1 8.1 0.2 98 98 A L H 3X S+ 0 0 8 -4,-2.7 4,-2.6 1,-0.3 -2,-0.2 0.881 105.6 59.7 -62.3 -35.5 -7.8 4.9 -1.4 99 99 A K H 3< S+ 0 0 73 -4,-2.7 -1,-0.3 1,-0.2 -2,-0.2 0.702 111.2 44.4 -62.0 -20.2 -11.2 3.2 -1.1 100 100 A K H X> S+ 0 0 79 -3,-1.5 4,-3.3 -4,-0.4 3,-1.2 0.886 113.1 50.0 -80.7 -52.9 -12.3 6.1 -3.2 101 101 A A H 3< S+ 0 0 37 -4,-2.5 2,-0.9 1,-0.3 -2,-0.2 0.925 111.5 43.5 -54.6 -54.6 -9.4 5.9 -5.7 102 102 A T T 3< S+ 0 0 23 -4,-2.6 -1,-0.3 1,-0.2 -67,-0.2 0.033 136.1 10.1 -81.2 29.6 -9.5 2.2 -6.6 103 103 A N T <4 0 0 118 -3,-1.2 -2,-0.2 -2,-0.9 -1,-0.2 0.460 360.0 360.0-170.0 -53.8 -13.3 2.1 -6.9 104 104 A E < 0 0 163 -4,-3.3 -4,-0.2 -5,-0.1 -3,-0.1 0.923 360.0 360.0 71.7 360.0 -15.2 5.4 -6.9