==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-AUG-05 2AKK . COMPND 2 MOLECULE: PHNA-LIKE PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: RHODOPSEUDOMONAS PALUSTRIS; . AUTHOR B.WU,A.YEE,T.A.RAMELOT,A.SEMESI,A.LEMAK,M.KENNEDY,A.EDWARD, . 74 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5271.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 64.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 26 35.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 11 14.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 1 2 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 229 0, 0.0 2,-0.3 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 114.2 -11.0 -17.7 -7.2 2 2 A S + 0 0 86 2,-0.0 47,-0.1 1,-0.0 2,-0.0 -0.809 360.0 152.4-136.8 93.6 -9.9 -16.4 -3.8 3 3 A I + 0 0 75 -2,-0.3 2,-0.9 45,-0.1 43,-0.1 -0.419 21.7 179.2-113.9 53.1 -6.9 -14.1 -3.8 4 4 A E - 0 0 95 1,-0.1 2,-0.6 8,-0.1 10,-0.1 -0.422 11.3-160.8 -63.6 100.1 -7.8 -12.2 -0.6 5 5 A V + 0 0 0 -2,-0.9 8,-3.0 8,-0.4 2,-0.3 -0.752 14.4 178.4 -86.0 121.3 -4.9 -9.8 -0.2 6 6 A R B -A 12 0A 115 -2,-0.6 6,-0.2 43,-0.5 60,-0.1 -0.914 25.6-112.0-124.9 153.2 -4.8 -8.5 3.4 7 7 A D - 0 0 10 4,-2.0 63,-0.2 -2,-0.3 -1,-0.1 0.063 51.3 -76.8 -70.8-174.2 -2.3 -6.1 5.1 8 8 A C S S+ 0 0 52 61,-2.5 62,-0.1 1,-0.2 -1,-0.1 0.794 136.2 38.9 -56.1 -30.7 0.2 -6.9 7.8 9 9 A N S S- 0 0 126 60,-0.3 -1,-0.2 2,-0.1 61,-0.1 0.934 124.7 -95.0 -83.9 -56.7 -2.8 -7.0 10.3 10 10 A G + 0 0 40 1,-0.1 2,-0.3 -5,-0.0 -2,-0.1 0.449 68.1 145.8 146.3 19.2 -5.4 -8.6 8.1 11 11 A A - 0 0 29 1,-0.1 -4,-2.0 60,-0.0 2,-0.2 -0.664 51.1-114.1 -83.1 135.6 -7.5 -5.8 6.5 12 12 A L B -A 6 0A 86 -2,-0.3 -6,-0.2 -6,-0.2 2,-0.2 -0.475 31.7-163.1 -77.3 135.7 -8.7 -6.7 3.0 13 13 A L + 0 0 9 -8,-3.0 -8,-0.4 -2,-0.2 2,-0.3 -0.681 11.2 171.0-112.0 166.7 -7.5 -4.8 0.0 14 14 A A > - 0 0 45 -2,-0.2 3,-1.9 29,-0.1 2,-0.4 -0.919 48.1 -51.0-158.9 179.5 -8.7 -4.4 -3.6 15 15 A D T 3 S+ 0 0 120 -2,-0.3 29,-0.3 1,-0.3 3,-0.1 -0.508 127.0 21.3 -64.7 118.4 -8.2 -2.4 -6.8 16 16 A G T 3 S+ 0 0 53 27,-3.0 -1,-0.3 -2,-0.4 28,-0.2 0.519 96.5 130.6 100.2 8.6 -8.2 1.2 -5.9 17 17 A D E < -B 43 0B 35 -3,-1.9 26,-3.4 26,-1.3 25,-1.9 -0.325 48.5-130.1 -88.8 174.2 -7.4 0.7 -2.2 18 18 A N E +B 41 0B 48 23,-0.3 54,-2.6 54,-0.2 23,-0.3 -0.982 23.4 173.3-133.7 139.6 -4.7 2.5 -0.2 19 19 A V E -BC 40 71B 0 21,-3.0 21,-2.7 -2,-0.4 2,-0.3 -0.788 12.9-150.6-131.9 174.7 -2.0 1.3 2.1 20 20 A S E -BC 39 70B 22 50,-2.0 50,-2.9 19,-0.3 19,-0.2 -0.993 32.0 -89.4-151.9 148.9 0.9 2.8 4.0 21 21 A L E - C 0 69B 8 17,-2.6 16,-2.0 -2,-0.3 48,-0.2 -0.346 24.2-166.8 -60.7 130.0 4.4 1.6 5.2 22 22 A I S S+ 0 0 53 46,-2.3 2,-0.3 14,-0.2 -1,-0.1 0.557 76.8 4.5 -91.2 -11.3 4.4 0.0 8.7 23 23 A K S S- 0 0 104 45,-0.5 2,-0.6 12,-0.2 15,-0.2 -0.904 93.5 -75.7-156.6 178.3 8.2 0.3 8.8 24 24 A D - 0 0 74 -2,-0.3 2,-0.5 11,-0.1 11,-0.3 -0.801 44.4-170.9 -91.4 121.9 11.2 1.6 6.9 25 25 A L E -D 34 0C 42 -2,-0.6 9,-2.7 9,-0.6 2,-0.4 -0.958 7.6-151.9-117.3 125.2 12.0 -0.5 3.9 26 26 A K E -D 33 0C 137 -2,-0.5 2,-0.3 7,-0.3 7,-0.3 -0.781 4.3-156.8-101.0 138.0 15.2 0.0 1.9 27 27 A L E > -D 32 0C 84 5,-3.6 5,-1.9 -2,-0.4 4,-0.0 -0.836 18.7-133.8-109.3 149.6 15.6 -0.8 -1.8 28 28 A K T > 5S+ 0 0 189 -2,-0.3 3,-2.2 3,-0.2 2,-0.4 0.841 74.5 106.2 -72.5 -33.7 18.9 -1.4 -3.5 29 29 A G T 3 5S- 0 0 47 1,-0.3 -2,-0.2 2,-0.1 3,-0.1 -0.293 113.9 -28.9 -56.3 105.8 18.2 0.8 -6.5 30 30 A S T 3 5S- 0 0 126 -2,-0.4 -1,-0.3 1,-0.2 -2,-0.1 0.682 115.3 -71.0 59.4 20.8 20.4 3.9 -6.0 31 31 A S T < 5S- 0 0 86 -3,-2.2 2,-0.8 1,-0.2 -3,-0.2 0.999 70.0-173.7 55.9 73.5 20.0 3.2 -2.2 32 32 A T E < -D 27 0C 56 -5,-1.9 -5,-3.6 -3,-0.1 2,-0.9 -0.856 4.6-169.3-101.5 103.1 16.3 4.1 -1.9 33 33 A V E -D 26 0C 87 -2,-0.8 -7,-0.3 -7,-0.3 2,-0.2 -0.809 6.7-159.1 -96.9 101.9 15.4 3.9 1.8 34 34 A L E -D 25 0C 25 -9,-2.7 -9,-0.6 -2,-0.9 2,-0.2 -0.549 13.4-139.3 -77.9 147.5 11.6 4.2 2.2 35 35 A K > - 0 0 120 -11,-0.3 3,-1.5 -2,-0.2 -14,-0.2 -0.663 21.9 -89.0-110.0 160.8 10.3 5.3 5.5 36 36 A R T 3 S+ 0 0 180 1,-0.2 -14,-0.2 -2,-0.2 -12,-0.1 -0.396 112.0 36.0 -61.6 138.8 7.5 4.3 7.8 37 37 A G T 3 S+ 0 0 55 -16,-2.0 2,-0.3 1,-0.3 -1,-0.2 0.262 76.5 146.7 98.0 -13.1 4.3 6.3 7.1 38 38 A T < - 0 0 43 -3,-1.5 -17,-2.6 -15,-0.2 2,-0.5 -0.429 45.5-135.2 -58.8 119.4 4.9 6.4 3.3 39 39 A M E -B 20 0B 94 -2,-0.3 2,-0.6 -19,-0.2 -19,-0.3 -0.702 22.7-174.7 -88.0 124.6 1.5 6.3 1.8 40 40 A I E +B 19 0B 1 -21,-2.7 -21,-3.0 -2,-0.5 2,-0.3 -0.865 19.6 170.1-114.5 91.0 0.9 3.9 -1.1 41 41 A R E +B 18 0B 169 -2,-0.6 -23,-0.3 14,-0.5 14,-0.2 -0.793 50.9 45.2-108.6 149.5 -2.6 4.7 -2.2 42 42 A G E S+ 0 0 16 -25,-1.9 -24,-0.2 -2,-0.3 -1,-0.2 0.863 76.4 163.2 86.3 42.6 -4.3 3.4 -5.4 43 43 A I E -B 17 0B 0 -26,-3.4 -27,-3.0 -3,-0.2 -26,-1.3 -0.525 19.1-162.5 -91.6 160.2 -3.1 -0.1 -5.1 44 44 A R E -E 53 0D 103 9,-2.4 9,-2.8 -29,-0.3 -29,-0.2 -0.957 24.1 -98.3-141.1 161.0 -4.5 -3.2 -6.9 45 45 A L E -E 52 0D 56 -2,-0.3 7,-0.2 7,-0.2 2,-0.1 -0.414 37.9-169.3 -79.9 154.1 -4.4 -6.9 -6.5 46 46 A T - 0 0 32 2,-0.9 -1,-0.1 5,-0.8 -41,-0.0 -0.321 48.9 -71.6-121.5-159.3 -2.0 -9.1 -8.5 47 47 A D S S+ 0 0 168 -2,-0.1 2,-0.3 2,-0.0 5,-0.1 0.622 116.2 76.2 -71.2 -14.2 -1.4 -12.8 -9.3 48 48 A S - 0 0 37 3,-0.2 -2,-0.9 1,-0.1 -43,-0.1 -0.722 62.8-162.1-101.0 148.4 -0.2 -12.8 -5.7 49 49 A E S S+ 0 0 99 -2,-0.3 -43,-0.5 -4,-0.1 -1,-0.1 0.547 101.9 51.2 -92.5 -16.4 -2.2 -12.7 -2.5 50 50 A D S S+ 0 0 89 -45,-0.1 16,-2.6 15,-0.1 2,-0.3 0.580 110.4 55.4 -95.4 -14.9 0.9 -11.7 -0.7 51 51 A E E - F 0 65D 49 14,-0.3 -5,-0.8 15,-0.1 2,-0.3 -0.907 56.5-175.5-125.7 148.7 1.7 -8.8 -3.1 52 52 A I E -EF 45 64D 1 12,-3.2 12,-3.4 -2,-0.3 2,-0.5 -0.922 22.4-130.0-132.4 160.9 -0.1 -5.8 -4.4 53 53 A E E +EF 44 63D 51 -9,-2.8 -9,-2.4 -2,-0.3 10,-0.3 -0.964 42.3 146.6-115.6 122.7 0.8 -3.2 -7.0 54 54 A G E - F 0 62D 2 8,-2.7 8,-2.0 -2,-0.5 7,-1.0 -0.445 36.4-111.0-133.3-156.1 0.5 0.4 -6.0 55 55 A R E - F 0 60D 109 5,-0.2 -14,-0.5 -14,-0.2 5,-0.3 -0.994 17.8-168.5-149.4 148.2 1.9 3.9 -6.5 56 56 A T - 0 0 23 3,-2.1 -16,-0.1 -2,-0.3 5,-0.0 -0.650 45.1 -92.1-122.4-176.1 3.8 6.4 -4.4 57 57 A D S S+ 0 0 173 -18,-0.3 3,-0.1 -2,-0.2 -17,-0.0 0.879 126.4 19.4 -64.6 -38.0 4.7 10.1 -4.9 58 58 A K S S+ 0 0 175 1,-0.2 2,-0.6 -3,-0.0 -1,-0.1 0.813 128.3 46.0-102.0 -39.9 8.0 9.1 -6.5 59 59 A I - 0 0 68 3,-0.0 -3,-2.1 0, 0.0 3,-0.3 -0.895 66.6-178.3-114.6 104.2 7.5 5.5 -7.6 60 60 A K E +F 55 0D 160 -2,-0.6 -5,-0.2 -5,-0.3 -3,-0.0 -0.761 64.5 24.1-100.2 149.2 4.2 4.7 -9.4 61 61 A G E S+ 0 0 45 -7,-1.0 2,-0.4 -2,-0.3 -6,-0.2 0.948 80.6 153.3 67.6 50.6 3.3 1.3 -10.6 62 62 A L E -F 54 0D 31 -8,-2.0 -8,-2.7 -3,-0.3 2,-0.6 -0.937 39.3-138.0-115.2 135.4 5.4 -0.7 -8.2 63 63 A V E +F 53 0D 79 -2,-0.4 2,-0.4 -10,-0.3 -10,-0.3 -0.806 31.9 171.7 -92.7 122.3 4.6 -4.2 -7.1 64 64 A L E -F 52 0D 29 -12,-3.4 -12,-3.2 -2,-0.6 2,-0.3 -0.970 38.8-107.7-134.0 147.0 5.2 -4.8 -3.4 65 65 A R E > -F 51 0D 131 -2,-0.4 3,-0.9 -14,-0.3 -14,-0.3 -0.563 25.6-141.9 -66.3 130.5 4.5 -7.5 -0.8 66 66 A T T 3 S+ 0 0 5 -16,-2.6 3,-0.4 -2,-0.3 -15,-0.1 0.113 79.0 100.1 -86.2 26.3 1.8 -6.3 1.5 67 67 A E T 3 S+ 0 0 99 -17,-0.3 -1,-0.2 1,-0.2 -16,-0.1 0.736 91.5 34.1 -84.2 -22.6 3.5 -7.9 4.5 68 68 A F S < S+ 0 0 24 -3,-0.9 -46,-2.3 2,-0.0 -45,-0.5 0.091 104.4 95.4-117.3 19.4 4.9 -4.6 5.5 69 69 A L E -C 21 0B 0 -3,-0.4 -61,-2.5 -48,-0.2 2,-0.4 -0.878 58.2-150.8-116.7 145.5 2.0 -2.5 4.4 70 70 A K E -C 20 0B 91 -50,-2.9 -50,-2.0 -2,-0.4 2,-0.3 -0.941 28.4-110.0-114.4 133.3 -1.0 -1.3 6.4 71 71 A K E -C 19 0B 48 -2,-0.4 -52,-0.3 -52,-0.2 2,-0.1 -0.471 44.9-143.4 -58.4 122.3 -4.4 -0.7 5.0 72 72 A A + 0 0 8 -54,-2.6 2,-1.5 -2,-0.3 -54,-0.2 -0.310 65.6 26.7 -89.6 173.1 -4.7 3.1 5.2 73 73 A G 0 0 70 1,-0.1 -1,-0.1 -2,-0.1 -54,-0.0 -0.620 360.0 360.0 80.3 -89.4 -7.7 5.3 6.0 74 74 A S 0 0 145 -2,-1.5 -1,-0.1 0, 0.0 -3,-0.1 0.138 360.0 360.0-153.8 360.0 -9.7 2.9 8.2