==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=21-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ENDOCYTOSIS/EXOCYTOSIS 04-AUG-05 2AL3 . COMPND 2 MOLECULE: TUG LONG ISOFORM; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR M.C.TETTAMANZI,C.YU,J.S.BOGAN,M.E.HODSDON . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5283.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 4 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 15 19.7 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 8 10.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 14.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 10 A S 0 0 84 0, 0.0 2,-0.3 0, 0.0 63,-0.2 0.000 360.0 360.0 360.0 145.9 -10.9 -14.4 -7.3 2 11 A A - 0 0 19 61,-3.6 2,-0.4 60,-0.4 14,-0.3 -0.995 360.0-150.7-146.9 144.9 -7.4 -15.1 -6.1 3 12 A V E -A 15 0A 3 12,-1.5 12,-1.1 -2,-0.3 2,-0.4 -0.914 8.3-163.1-118.9 144.9 -4.1 -15.9 -7.7 4 13 A S E -Ab 14 66A 25 61,-4.1 63,-5.7 -2,-0.4 2,-0.5 -0.990 4.1-159.6-130.6 136.9 -1.3 -18.0 -6.3 5 14 A V E -Ab 13 67A 17 8,-2.8 8,-2.6 -2,-0.4 2,-0.7 -0.966 4.1-163.2-119.8 117.5 2.3 -18.2 -7.4 6 15 A L E -Ab 12 68A 50 61,-2.3 63,-2.4 -2,-0.5 6,-0.2 -0.884 11.1-151.4-103.5 109.7 4.4 -21.2 -6.4 7 16 A A > - 0 0 7 4,-3.0 3,-1.2 -2,-0.7 4,-0.4 -0.665 9.0-150.5 -82.8 130.9 8.1 -20.5 -6.8 8 17 A P T 3 S+ 0 0 88 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 0.552 92.0 77.9 -75.1 -8.1 10.2 -23.6 -7.6 9 18 A N T 3 S- 0 0 104 2,-0.2 3,-0.1 1,-0.0 -2,-0.0 0.405 128.7 -91.2 -79.6 2.5 13.1 -21.9 -5.8 10 19 A G S < S+ 0 0 68 -3,-1.2 2,-0.6 1,-0.2 -1,-0.0 0.592 93.5 125.0 96.1 15.8 11.3 -22.9 -2.6 11 20 A R - 0 0 182 -4,-0.4 -4,-3.0 2,-0.0 2,-0.6 -0.939 38.1-172.6-113.7 114.3 9.3 -19.7 -2.4 12 21 A R E +A 6 0A 223 -2,-0.6 2,-0.4 -6,-0.2 -6,-0.2 -0.927 15.5 158.4-110.4 116.1 5.6 -20.0 -2.2 13 22 A H E -A 5 0A 62 -8,-2.6 -8,-2.8 -2,-0.6 2,-0.4 -0.999 23.0-156.0-139.1 138.7 3.5 -16.8 -2.4 14 23 A T E -A 4 0A 79 -2,-0.4 2,-0.5 -10,-0.3 -10,-0.3 -0.958 5.5-166.2-118.7 132.1 -0.1 -16.2 -3.3 15 24 A V E -A 3 0A 46 -12,-1.1 -12,-1.5 -2,-0.4 2,-0.6 -0.974 17.3-136.4-120.4 126.4 -1.4 -12.9 -4.7 16 25 A K + 0 0 176 -2,-0.5 2,-0.3 -14,-0.3 -14,-0.2 -0.716 33.8 171.6 -83.8 118.1 -5.2 -12.2 -4.8 17 26 A V - 0 0 9 -2,-0.6 6,-0.1 48,-0.1 5,-0.0 -0.761 32.2-101.1-122.1 168.5 -6.0 -10.6 -8.1 18 27 A T > - 0 0 68 -2,-0.3 3,-0.6 1,-0.1 38,-0.2 -0.575 19.3-129.2 -90.5 154.2 -9.3 -9.7 -9.9 19 28 A P T 3 S+ 0 0 51 0, 0.0 41,-0.2 0, 0.0 -1,-0.1 0.604 115.0 43.5 -75.0 -12.4 -10.9 -11.8 -12.7 20 29 A S T 3 S+ 0 0 88 36,-0.2 2,-0.3 37,-0.1 35,-0.0 0.370 95.4 101.2-109.8 -1.5 -11.1 -8.6 -14.7 21 30 A T S < S- 0 0 30 -3,-0.6 35,-1.1 1,-0.1 2,-0.4 -0.673 77.8-116.4 -88.7 140.1 -7.6 -7.4 -13.8 22 31 A V B >> -E 55 0B 32 -2,-0.3 4,-1.7 33,-0.2 3,-1.2 -0.603 11.6-138.0 -77.4 129.7 -4.8 -7.9 -16.3 23 32 A L H 3> S+ 0 0 9 31,-0.7 4,-4.7 -2,-0.4 5,-0.3 0.730 103.8 69.2 -57.4 -21.3 -2.1 -10.2 -15.0 24 33 A L H 3> S+ 0 0 72 28,-0.6 4,-2.9 2,-0.2 -1,-0.3 0.919 101.2 42.9 -63.1 -45.4 0.2 -7.6 -16.5 25 34 A Q H <> S+ 0 0 75 -3,-1.2 4,-2.0 2,-0.2 -2,-0.2 0.875 120.8 42.2 -67.7 -39.0 -0.7 -5.2 -13.8 26 35 A V H X S+ 0 0 12 -4,-1.7 4,-3.6 2,-0.2 5,-0.3 0.942 119.1 43.1 -72.1 -50.3 -0.5 -7.8 -11.1 27 36 A L H X S+ 0 0 13 -4,-4.7 4,-2.5 1,-0.2 -2,-0.2 0.895 117.8 47.4 -61.7 -41.5 2.6 -9.4 -12.5 28 37 A E H X S+ 0 0 102 -4,-2.9 4,-2.0 -5,-0.3 -1,-0.2 0.869 114.2 47.5 -67.1 -38.1 4.1 -5.9 -13.0 29 38 A D H X S+ 0 0 58 -4,-2.0 4,-2.6 2,-0.2 5,-0.3 0.963 117.2 40.5 -66.7 -54.3 3.0 -4.9 -9.5 30 39 A T H X S+ 0 0 19 -4,-3.6 4,-3.4 1,-0.2 -2,-0.2 0.840 115.6 52.9 -62.7 -34.5 4.4 -8.0 -7.9 31 40 A C H <>S+ 0 0 7 -4,-2.5 5,-2.6 -5,-0.3 -1,-0.2 0.862 109.3 50.0 -68.3 -36.6 7.4 -7.8 -10.1 32 41 A R H ><5S+ 0 0 196 -4,-2.0 3,-0.6 3,-0.2 -2,-0.2 0.936 119.8 34.7 -66.3 -48.8 7.9 -4.2 -9.0 33 42 A R H 3<5S+ 0 0 181 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.850 126.1 42.0 -73.7 -36.5 7.6 -5.1 -5.3 34 43 A Q T 3<5S- 0 0 38 -4,-3.4 -1,-0.2 -5,-0.3 -2,-0.2 0.209 107.4-130.3 -93.7 13.1 9.4 -8.4 -5.9 35 44 A D T < 5 + 0 0 131 -3,-0.6 2,-0.3 1,-0.1 -3,-0.2 0.882 55.8 148.8 33.7 69.5 11.8 -6.7 -8.2 36 45 A F < - 0 0 44 -5,-2.6 -1,-0.1 -9,-0.2 -2,-0.1 -0.896 39.6-142.7-130.1 159.2 11.3 -9.3 -10.9 37 46 A N > - 0 0 98 -2,-0.3 3,-0.5 1,-0.1 4,-0.1 -0.944 10.8-146.5-124.5 145.2 11.3 -9.5 -14.7 38 47 A P G > S+ 0 0 21 0, 0.0 36,-1.6 0, 0.0 3,-0.9 0.842 101.0 63.0 -75.0 -35.9 9.1 -11.4 -17.1 39 48 A S G 3 S+ 0 0 60 34,-0.3 3,-0.1 1,-0.3 0, 0.0 0.581 116.2 34.0 -64.5 -8.6 11.9 -11.9 -19.5 40 49 A E G < S+ 0 0 130 -3,-0.5 2,-0.3 1,-0.2 33,-0.3 0.346 123.1 49.3-124.0 -2.6 13.6 -13.8 -16.7 41 50 A Y < - 0 0 61 -3,-0.9 33,-0.6 30,-0.4 2,-0.3 -0.999 59.8-171.3-143.4 139.5 10.4 -15.3 -15.2 42 51 A D E -C 70 0A 12 28,-6.4 28,-3.1 -2,-0.3 2,-0.4 -0.963 9.4-151.1-131.3 147.4 7.4 -17.1 -16.6 43 52 A L E +CD 69 50A 15 7,-2.2 7,-5.1 -2,-0.3 2,-0.3 -0.963 18.8 168.1-121.6 136.1 4.1 -18.2 -15.1 44 53 A K E -CD 68 49A 97 24,-2.0 24,-2.7 -2,-0.4 2,-0.5 -0.990 15.6-163.3-148.7 137.4 2.0 -21.2 -16.1 45 54 A F E > - D 0 48A 23 3,-4.5 3,-2.9 -2,-0.3 2,-0.5 -0.960 60.6 -56.8-127.9 113.8 -0.9 -22.9 -14.6 46 55 A Q T 3 S- 0 0 136 -2,-0.5 21,-0.0 1,-0.3 22,-0.0 -0.426 124.1 -15.8 60.6-109.1 -2.0 -26.4 -15.7 47 56 A R T 3 S+ 0 0 228 -2,-0.5 2,-0.5 2,-0.1 -1,-0.3 0.148 124.6 88.1-110.7 14.9 -2.5 -26.1 -19.4 48 57 A T E < S-D 45 0A 38 -3,-2.9 -3,-4.5 2,-0.0 2,-0.3 -0.971 71.4-136.3-120.6 127.8 -2.6 -22.3 -19.3 49 58 A V E -D 44 0A 56 -2,-0.5 2,-0.6 -5,-0.3 -5,-0.3 -0.596 14.0-149.0 -81.8 140.3 0.4 -20.1 -19.6 50 59 A L E +D 43 0A 2 -7,-5.1 -7,-2.2 -2,-0.3 2,-0.2 -0.953 40.8 118.9-115.4 118.3 0.6 -17.1 -17.2 51 60 A D S S- 0 0 6 -2,-0.6 3,-0.4 -9,-0.2 -24,-0.2 -0.518 75.6 -71.4-145.8-147.5 2.4 -14.0 -18.5 52 61 A L S S+ 0 0 31 1,-0.2 -28,-0.6 -2,-0.2 2,-0.5 0.833 125.7 53.7 -90.3 -40.2 1.7 -10.3 -19.1 53 62 A S S S+ 0 0 76 -30,-0.1 2,-0.4 1,-0.1 -1,-0.2 -0.188 90.0 96.4 -88.2 41.4 -0.4 -10.9 -22.2 54 63 A L - 0 0 35 -2,-0.5 -31,-0.7 -3,-0.4 2,-0.2 -0.822 56.6-169.4-135.6 93.6 -2.6 -13.2 -20.3 55 64 A Q B >>> -E 22 0B 44 -2,-0.4 4,-4.5 -33,-0.2 3,-1.2 -0.585 26.0-135.3 -84.4 145.0 -5.7 -11.6 -18.8 56 65 A W H 3>5S+ 0 0 22 -35,-1.1 4,-2.0 1,-0.3 5,-0.2 0.892 107.7 64.0 -63.5 -40.3 -7.9 -13.5 -16.3 57 66 A R H 345S+ 0 0 167 -36,-0.2 -1,-0.3 2,-0.2 -37,-0.1 0.682 123.8 19.1 -56.6 -17.2 -10.9 -12.3 -18.3 58 67 A F H <45S+ 0 0 136 -3,-1.2 -2,-0.2 -39,-0.0 -1,-0.1 0.725 124.5 49.8-116.0 -61.0 -9.4 -14.4 -21.0 59 68 A A H <5S- 0 0 12 -4,-4.5 -3,-0.2 -11,-0.0 -2,-0.2 0.694 96.0-148.8 -55.6 -17.7 -6.9 -16.9 -19.6 60 69 A N << - 0 0 104 -4,-2.0 -3,-0.1 -5,-0.5 -4,-0.1 0.911 15.6-157.9 42.8 94.0 -9.8 -17.6 -17.2 61 70 A L - 0 0 14 -5,-0.2 -1,-0.1 1,-0.1 6,-0.0 -0.614 15.5-103.0 -99.1 160.6 -8.0 -18.6 -14.0 62 71 A P - 0 0 38 0, 0.0 -60,-0.4 0, 0.0 3,-0.1 -0.171 44.8 -86.8 -75.0 172.4 -9.3 -20.7 -11.1 63 72 A N S S+ 0 0 127 1,-0.3 -61,-3.6 -62,-0.1 -2,-0.1 0.921 132.1 21.9 -40.6 -85.3 -10.5 -19.3 -7.8 64 73 A N S S- 0 0 92 -63,-0.2 -1,-0.3 -61,-0.1 -60,-0.2 0.505 102.6-148.7 -64.5 -1.7 -7.2 -19.2 -6.0 65 74 A A - 0 0 1 -62,-0.3 -61,-4.1 1,-0.2 2,-0.6 0.823 12.7-155.0 27.0 83.8 -5.9 -19.2 -9.5 66 75 A K E -b 4 0A 80 -63,-0.3 2,-0.3 -52,-0.1 -61,-0.2 -0.784 14.5-174.9 -90.7 120.5 -2.7 -21.1 -8.7 67 76 A L E -b 5 0A 5 -63,-5.7 -61,-2.3 -2,-0.6 2,-0.4 -0.845 20.8-126.3-115.6 152.4 0.1 -20.3 -11.1 68 77 A E E -bC 6 44A 79 -24,-2.7 -24,-2.0 -2,-0.3 2,-0.4 -0.840 19.3-136.6-101.4 133.0 3.6 -21.9 -11.4 69 78 A M E + C 0 43A 12 -63,-2.4 -26,-0.2 -2,-0.4 -28,-0.0 -0.727 27.8 170.6 -90.7 134.0 6.6 -19.7 -11.4 70 79 A V E - C 0 42A 66 -28,-3.1 -28,-6.4 -2,-0.4 2,-0.3 -0.992 32.8-118.7-146.1 134.7 9.4 -20.5 -13.8 71 80 A P + 0 0 87 0, 0.0 -30,-0.4 0, 0.0 2,-0.3 -0.545 66.9 82.6 -75.1 133.0 12.6 -18.5 -14.8 72 81 A V S S- 0 0 70 -2,-0.3 2,-0.6 -34,-0.1 -31,-0.2 -0.970 81.6 -67.9 165.1-166.2 12.8 -17.5 -18.4 73 82 A S S S- 0 0 57 1,-0.4 -34,-0.3 -33,-0.3 -31,-0.1 -0.896 82.7 -57.9-122.5 100.1 11.6 -14.9 -20.9 74 83 A R S S- 0 0 136 -36,-1.6 -1,-0.4 -33,-0.6 2,-0.1 0.253 86.4 -49.8 51.5 173.1 7.9 -15.0 -21.6 75 84 A S 0 0 49 -3,-0.1 -31,-0.0 -32,-0.1 -24,-0.0 -0.444 360.0 360.0 -77.1 150.7 6.2 -18.1 -22.9 76 85 A R 0 0 292 -2,-0.1 -3,-0.0 0, 0.0 -2,-0.0 -0.873 360.0 360.0 174.8 360.0 7.6 -19.9 -25.9