==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=29-MAR-2013 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 06-SEP-96 1AN2 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR A.R.FERRE-D'AMARE,G.C.PRENDERGAST,E.B.ZIFF,S.K.BURLEY . 86 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8299.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 88.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 17 19.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 56 65.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 22 A A 0 0 143 0, 0.0 2,-0.5 0, 0.0 3,-0.2 0.000 360.0 360.0 360.0 118.5 -5.1 0.0 18.0 2 23 A D + 0 0 116 1,-0.2 0, 0.0 2,-0.1 0, 0.0 -0.480 360.0 135.5 -59.6 105.9 -3.2 3.0 19.3 3 24 A K S S+ 0 0 161 -2,-0.5 -1,-0.2 3,-0.0 2,-0.1 0.172 79.8 41.2-129.7 -4.3 -5.7 4.0 21.9 4 25 A R S >> S+ 0 0 205 -3,-0.2 3,-3.8 3,-0.1 4,-1.1 0.626 113.9 55.9 -98.1 -78.2 -2.9 4.6 24.4 5 26 A A H 3> S+ 0 0 40 1,-0.3 4,-2.4 2,-0.2 5,-0.4 0.528 109.0 38.9 -17.3 -88.9 -0.6 6.2 21.8 6 27 A H H 3> S+ 0 0 133 2,-0.2 4,-0.6 1,-0.2 -1,-0.3 0.676 125.5 44.9 -47.0 -19.0 -2.7 9.2 20.4 7 28 A H H X> S+ 0 0 108 -3,-3.8 4,-2.0 2,-0.2 3,-1.3 0.902 110.9 47.2 -86.0 -68.4 -3.8 9.6 24.0 8 29 A N H 3< S+ 0 0 87 -4,-1.1 -2,-0.2 1,-0.3 -3,-0.2 0.698 120.1 45.9 -43.5 -24.6 -0.5 9.3 25.9 9 30 A A H >X S+ 0 0 39 -4,-2.4 4,-1.1 -5,-0.4 3,-0.5 0.767 105.0 57.4 -89.3 -34.9 0.6 11.7 23.3 10 31 A L H XX S+ 0 0 117 -3,-1.3 4,-2.1 -4,-0.6 3,-1.8 0.989 107.5 49.4 -60.6 -49.5 -2.3 14.0 23.5 11 32 A E H 3X S+ 0 0 63 -4,-2.0 4,-1.7 1,-0.3 -1,-0.3 0.633 106.7 57.4 -64.0 -14.7 -1.6 14.6 27.2 12 33 A R H <> S+ 0 0 134 -3,-0.5 4,-1.0 -5,-0.4 -1,-0.3 0.722 106.6 46.4 -89.6 -18.2 2.0 15.2 26.3 13 34 A K H X S+ 0 0 119 -4,-1.7 4,-1.9 1,-0.3 3,-0.8 0.743 110.9 50.7 -42.3 -41.9 1.4 19.3 29.4 16 37 A D H 3X S+ 0 0 63 -4,-1.0 4,-2.3 1,-0.2 5,-0.3 0.976 101.3 65.1 -58.8 -52.0 4.1 20.9 27.1 17 38 A H H 3X S+ 0 0 119 -4,-2.4 4,-0.9 -3,-0.5 -1,-0.2 0.654 107.8 40.6 -44.4 -22.9 1.6 23.6 26.5 18 39 A I H X S+ 0 0 73 -4,-2.3 4,-1.5 -5,-0.2 3,-1.2 0.826 118.2 44.8 -90.6 -62.2 6.0 26.5 27.8 21 42 A S H 3X S+ 0 0 67 -4,-0.9 4,-0.6 -5,-0.3 -2,-0.2 0.607 108.7 65.9 -60.0 2.9 3.1 28.8 28.6 22 43 A F H >X S+ 0 0 40 -4,-2.7 4,-2.2 2,-0.2 3,-0.6 0.914 99.3 44.2 -88.2 -47.6 4.3 28.7 32.2 23 44 A H H S+ 0 0 67 -3,-1.2 4,-2.3 -4,-0.5 5,-0.7 0.814 103.9 67.7 -64.5 -29.0 7.6 30.5 31.8 24 45 A S H 3<5S+ 0 0 66 -4,-1.5 4,-0.4 2,-0.2 -1,-0.3 0.900 107.1 41.1 -56.4 -36.5 5.6 32.9 29.7 25 46 A L H <<5S+ 0 0 62 -3,-0.6 -2,-0.2 -4,-0.6 -1,-0.2 0.986 118.5 43.8 -73.2 -61.4 4.0 33.7 33.1 26 47 A R H ><5S+ 0 0 56 -4,-2.2 3,-0.9 1,-0.2 -2,-0.2 0.918 116.2 43.4 -45.7 -65.3 7.2 33.7 35.2 27 48 A D T 3<5S+ 0 0 94 -4,-2.3 2,-0.3 1,-0.3 -1,-0.2 0.832 100.2 76.3 -55.5 -26.3 9.6 35.7 32.9 28 49 A S T 3 S- 0 0 9 -3,-0.2 3,-1.7 -5,-0.1 -5,-0.1 0.236 90.6-137.9-145.0 -5.7 12.3 35.8 39.8 33 54 A Q T 3 - 0 0 155 1,-0.3 -6,-0.1 -6,-0.1 0, 0.0 0.914 56.4 -73.7 36.7 61.5 15.7 36.8 38.2 34 55 A G T 3 S+ 0 0 54 -5,-0.3 2,-0.3 -8,-0.1 -1,-0.3 0.698 108.2 103.1 28.4 41.0 15.1 34.7 35.0 35 56 A E S < S- 0 0 121 -3,-1.7 -1,-0.1 1,-0.2 0, 0.0 -0.949 74.3 -58.6-160.0 141.2 15.7 31.6 37.0 36 57 A K + 0 0 168 -2,-0.3 -1,-0.2 1,-0.0 -2,-0.0 0.302 52.5 138.8 30.6-153.0 14.2 28.5 38.7 37 58 A A - 0 0 47 2,-0.0 5,-0.1 4,-0.0 -1,-0.0 0.626 63.8 -63.3 85.2 124.0 11.7 28.6 41.6 38 59 A S >> - 0 0 66 1,-0.2 4,-1.1 3,-0.1 3,-0.6 0.290 34.4-127.0 -27.6 151.4 8.7 26.3 41.9 39 60 A R T 34 S+ 0 0 155 1,-0.2 -1,-0.2 2,-0.2 -2,-0.0 -0.029 116.3 62.3 -94.0 27.2 5.9 26.3 39.4 40 61 A A T 3> S+ 0 0 58 3,-0.1 4,-1.7 2,-0.0 -1,-0.2 0.481 104.3 43.6-117.5 -24.3 3.9 26.8 42.5 41 62 A Q H <> S+ 0 0 86 -3,-0.6 4,-1.5 2,-0.3 5,-0.4 0.630 99.3 67.6 -96.7 -22.7 5.7 30.1 43.3 42 63 A I H X S+ 0 0 5 -4,-1.1 4,-0.6 2,-0.2 -1,-0.2 0.759 109.7 42.6 -64.8 -26.9 5.5 31.4 39.7 43 64 A L H > S+ 0 0 96 -5,-0.2 4,-3.4 3,-0.1 -2,-0.3 0.940 115.8 48.5 -79.3 -58.1 1.9 31.4 40.8 44 65 A D H >X S+ 0 0 69 -4,-1.7 4,-1.3 2,-0.2 3,-1.1 0.893 115.0 41.0 -41.5 -81.6 2.7 32.9 44.3 45 66 A K H >X S+ 0 0 74 -4,-1.5 3,-2.2 1,-0.3 4,-1.6 0.820 119.7 43.3 -36.6 -64.9 4.9 35.8 43.2 46 67 A A H 3X S+ 0 0 12 -4,-0.6 4,-1.1 -5,-0.4 -1,-0.3 0.865 104.7 65.2 -57.6 -30.2 2.9 36.8 40.3 47 68 A T H S+ 0 0 109 -4,-2.6 4,-1.5 1,-0.2 5,-0.6 0.911 110.3 45.3 -58.9 -53.3 0.6 45.4 43.1 53 74 A M H X5S+ 0 0 59 -4,-2.5 4,-1.6 1,-0.2 5,-0.4 0.892 119.1 42.3 -64.3 -36.9 -0.6 46.6 39.8 54 75 A R H X5S+ 0 0 189 -4,-2.9 4,-1.9 3,-0.2 5,-0.4 0.981 121.8 44.6 -65.8 -54.1 -4.1 47.3 41.1 55 76 A R H X5S+ 0 0 127 -4,-3.5 4,-1.4 -5,-0.4 5,-0.2 0.936 120.7 34.8 -46.8 -90.5 -2.4 48.8 44.3 56 77 A K H X5S+ 0 0 110 -4,-1.5 4,-1.7 1,-0.2 -3,-0.2 0.780 124.0 46.1 -37.8 -47.9 0.3 50.9 42.8 57 78 A N H XX S+ 0 0 85 -4,-1.4 3,-1.6 -5,-0.4 4,-1.6 0.979 113.5 52.8 -56.5 -73.2 -3.6 55.3 43.5 60 81 A H H 3< S+ 0 0 108 -4,-1.7 4,-0.4 1,-0.3 -1,-0.2 0.665 108.9 47.7 -37.6 -40.2 -1.1 56.5 41.0 61 82 A Q H >X S+ 0 0 97 -4,-2.7 3,-2.0 1,-0.2 4,-1.8 0.956 111.4 52.4 -70.2 -40.3 -3.8 57.3 38.3 62 83 A Q H S+ 0 0 93 -3,-2.0 4,-1.0 -4,-0.4 3,-0.6 0.867 109.7 49.7 -76.1 -36.8 -2.6 62.2 38.2 65 86 A D H 3X S+ 0 0 76 -4,-1.8 4,-2.0 1,-0.3 -2,-0.3 0.691 105.4 51.3 -72.8 -22.4 -6.1 63.4 39.3 66 87 A D H 3X S+ 0 0 95 -4,-0.9 4,-1.0 2,-0.2 -1,-0.3 0.557 107.2 55.4 -85.7 -13.4 -4.9 65.2 42.4 67 88 A L H <> S+ 0 0 105 -3,-0.6 4,-2.4 -5,-0.2 -2,-0.3 0.760 104.8 56.7 -81.6 -24.8 -2.5 66.7 39.9 68 89 A K H < S+ 0 0 118 -4,-1.0 4,-0.4 -6,-0.2 3,-0.3 0.994 111.9 36.0 -65.2 -64.4 -5.7 67.6 38.2 69 90 A R H >X S+ 0 0 155 -4,-2.0 4,-2.4 1,-0.2 3,-0.9 0.829 112.0 63.4 -57.9 -30.4 -7.3 69.5 41.1 70 91 A Q H 3X S+ 0 0 97 -4,-1.0 4,-1.7 1,-0.3 -1,-0.2 0.972 106.8 43.1 -56.6 -50.0 -3.7 70.7 41.8 71 92 A N H 3X S+ 0 0 89 -4,-2.4 4,-1.2 -3,-0.3 -1,-0.3 0.506 106.1 65.6 -72.6 -4.9 -4.0 72.4 38.4 72 93 A A H <> S+ 0 0 6 -3,-0.9 4,-2.1 -4,-0.4 -2,-0.2 0.928 101.5 45.5 -79.0 -50.0 -7.5 73.5 39.4 73 94 A L H X S+ 0 0 109 -4,-2.4 4,-3.0 1,-0.3 -2,-0.2 0.941 110.3 56.9 -56.5 -40.5 -6.2 75.7 42.2 74 95 A L H X S+ 0 0 80 -4,-1.7 4,-2.7 -5,-0.3 -1,-0.3 0.919 101.2 56.4 -55.2 -42.5 -3.8 76.7 39.5 75 96 A E H X S+ 0 0 74 -4,-1.2 4,-3.0 2,-0.2 3,-0.5 0.970 107.4 46.3 -50.5 -61.1 -6.9 77.6 37.5 76 97 A Q H X S+ 0 0 131 -4,-2.1 4,-1.8 1,-0.3 -2,-0.2 0.940 109.2 56.2 -46.1 -50.3 -8.1 80.0 40.2 77 98 A Q H >X S+ 0 0 118 -4,-3.0 4,-2.6 1,-0.3 3,-0.5 0.897 111.6 43.0 -49.2 -43.7 -4.6 81.3 40.4 78 99 A V H 3X S+ 0 0 75 -4,-2.7 4,-0.6 -3,-0.5 -1,-0.3 0.873 106.4 60.5 -69.8 -39.4 -5.0 82.1 36.6 79 100 A R H 3< S+ 0 0 155 -4,-3.0 -1,-0.2 -5,-0.2 -2,-0.2 0.754 115.7 36.4 -60.5 -24.3 -8.5 83.4 37.2 80 101 A A H << S+ 0 0 78 -4,-1.8 -2,-0.2 -3,-0.5 -3,-0.1 0.938 93.8 88.1 -89.5 -67.7 -6.8 86.0 39.5 81 102 A L H < S- 0 0 101 -4,-2.6 2,-0.3 -5,-0.1 -2,-0.1 0.301 102.4 -21.8 7.7 -68.0 -3.4 86.7 37.6 82 103 A E < - 0 0 65 -4,-0.6 0, 0.0 3,-0.1 0, 0.0 -0.968 37.8-153.2-155.1 161.4 -4.5 89.5 35.3 83 104 A K S S+ 0 0 219 -2,-0.3 -2,-0.1 0, 0.0 -1,-0.1 0.498 101.6 16.5-117.9 -5.7 -7.6 91.0 33.7 84 105 A A S S+ 0 0 96 2,-0.1 -2,-0.0 0, 0.0 0, 0.0 0.431 109.8 75.8-142.5 -7.7 -5.9 92.5 30.7 85 106 A R 0 0 207 1,-0.2 -3,-0.1 0, 0.0 -4,-0.0 0.338 360.0 360.0 -86.7-141.8 -2.4 90.9 30.3 86 107 A S 0 0 131 -5,-0.1 -1,-0.2 0, 0.0 -2,-0.1 -0.503 360.0 360.0-163.6 360.0 -1.1 87.5 29.0