==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 17-AUG-05 2AQA . COMPND 2 MOLECULE: H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT 3; . SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; . AUTHOR T.HAMMA,S.L.REICHOW,G.VARANI,A.R.FERRE-D'AMARE . 57 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7098.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 19.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 3 5.3 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 3.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A H 0 0 217 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -3.2 12.1 20.9 25.3 2 3 A L - 0 0 109 1,-0.1 3,-0.0 2,-0.0 0, 0.0 -0.420 360.0-153.0 -70.7 143.3 12.1 17.1 24.7 3 4 A M S S+ 0 0 117 -2,-0.1 13,-0.5 1,-0.1 2,-0.3 0.018 77.0 47.5-104.4 25.6 14.5 15.8 22.0 4 5 A Y S S- 0 0 63 10,-0.2 2,-0.3 11,-0.2 10,-0.3 -0.942 77.1-123.1-165.0 141.1 12.3 12.7 21.4 5 6 A T E -A 13 0A 75 8,-2.3 8,-0.9 -2,-0.3 2,-0.2 -0.697 26.2-137.7 -90.7 138.8 8.7 11.8 20.8 6 7 A L E -A 12 0A 98 -2,-0.3 6,-0.2 6,-0.2 -1,-0.0 -0.532 15.4-126.8 -92.0 160.3 6.9 9.3 23.0 7 8 A G - 0 0 26 4,-1.2 -1,-0.1 -2,-0.2 6,-0.0 -0.272 34.8 -89.3 -96.4-174.9 4.5 6.6 21.9 8 9 A P S S+ 0 0 149 0, 0.0 -1,-0.0 0, 0.0 -2,-0.0 0.622 130.5 39.4 -69.8 -12.8 1.0 5.6 22.9 9 10 A D S S- 0 0 137 2,-0.1 -3,-0.0 0, 0.0 0, 0.0 0.618 128.0 -92.2-108.5 -22.0 2.5 3.4 25.6 10 11 A G S S+ 0 0 46 1,-0.3 2,-0.4 0, 0.0 -4,-0.0 0.561 70.5 152.4 117.7 17.4 5.3 5.7 26.7 11 12 A K - 0 0 144 1,-0.1 -4,-1.2 2,-0.0 -1,-0.3 -0.653 42.9-124.8 -82.8 131.0 8.1 4.5 24.5 12 13 A R E -A 6 0A 177 -2,-0.4 2,-0.3 -6,-0.2 -6,-0.2 -0.462 25.5-171.5 -74.9 145.1 10.8 7.0 23.7 13 14 A I E -A 5 0A 82 -8,-0.9 -8,-2.3 -2,-0.1 2,-1.1 -0.884 24.4-132.3-143.8 108.5 11.6 7.8 20.0 14 15 A Y + 0 0 200 -2,-0.3 -10,-0.2 -10,-0.3 3,-0.1 -0.410 53.0 139.1 -61.3 95.9 14.5 9.9 18.9 15 16 A T + 0 0 49 -2,-1.1 -11,-0.2 -12,-0.2 -1,-0.1 -0.307 3.8 148.8-138.0 51.8 12.8 12.2 16.4 16 17 A L - 0 0 82 -13,-0.5 -12,-0.1 1,-0.1 -1,-0.1 0.906 28.0-169.8 -51.7 -46.2 14.2 15.6 17.0 17 18 A K + 0 0 171 -14,-0.1 -1,-0.1 -3,-0.1 -2,-0.0 0.845 26.5 152.9 55.3 35.3 13.7 16.4 13.3 18 19 A K + 0 0 171 0, 0.0 2,-0.3 0, 0.0 -1,-0.1 0.924 55.3 63.0 -60.0 -46.4 15.7 19.6 13.8 19 20 A V S S- 0 0 100 1,-0.1 3,-0.0 2,-0.0 0, 0.0 -0.591 82.6-134.1 -83.8 142.5 16.8 19.7 10.2 20 21 A T S S+ 0 0 149 -2,-0.3 2,-0.3 1,-0.1 -1,-0.1 0.990 87.4 21.6 -55.8 -73.7 14.3 20.1 7.4 21 22 A E - 0 0 133 2,-0.1 2,-0.2 1,-0.0 -1,-0.1 -0.731 62.2-163.6-100.6 149.0 15.5 17.4 5.0 22 23 A S + 0 0 116 -2,-0.3 2,-0.3 2,-0.1 -1,-0.0 -0.632 45.9 106.7-132.1 75.1 17.6 14.3 6.0 23 24 A G - 0 0 58 -2,-0.2 2,-0.6 0, 0.0 -2,-0.1 -0.998 69.1-104.9-152.1 149.5 19.1 12.8 2.8 24 25 A E - 0 0 176 -2,-0.3 2,-0.4 1,-0.1 -2,-0.1 -0.633 38.0-128.8 -78.0 118.5 22.4 12.5 1.0 25 26 A I - 0 0 135 -2,-0.6 3,-0.1 1,-0.1 -1,-0.1 -0.528 23.9-128.8 -70.3 121.4 22.5 14.8 -2.0 26 27 A T - 0 0 117 -2,-0.4 2,-0.2 1,-0.1 -1,-0.1 -0.337 28.8 -97.0 -69.6 151.3 23.5 12.8 -5.1 27 28 A K - 0 0 155 1,-0.1 3,-0.2 2,-0.0 -1,-0.1 -0.457 39.4-138.3 -70.9 138.6 26.3 14.2 -7.3 28 29 A S S S+ 0 0 113 1,-0.2 -1,-0.1 -2,-0.2 -3,-0.0 -0.336 76.8 43.5 -90.5 175.1 25.2 16.2 -10.4 29 30 A A S S- 0 0 103 1,-0.1 -1,-0.2 -2,-0.1 3,-0.1 0.920 80.1-172.5 55.3 47.7 26.6 16.1 -13.9 30 31 A H - 0 0 133 -3,-0.2 2,-0.9 1,-0.1 -1,-0.1 -0.224 36.4 -83.1 -68.7 160.5 26.8 12.2 -13.8 31 32 A P - 0 0 120 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 -0.534 52.9-163.3 -69.7 102.8 28.5 10.3 -16.7 32 33 A A - 0 0 74 -2,-0.9 0, 0.0 1,-0.1 0, 0.0 -0.545 33.1 -80.4 -88.0 154.0 25.8 9.9 -19.4 33 34 A R - 0 0 217 -2,-0.2 2,-0.7 1,-0.1 -1,-0.1 -0.191 46.5-121.5 -52.0 138.3 26.0 7.4 -22.2 34 35 A F + 0 0 178 1,-0.1 -1,-0.1 -3,-0.1 0, 0.0 -0.769 60.1 126.5 -90.1 116.4 28.2 8.6 -25.0 35 36 A S + 0 0 58 -2,-0.7 -1,-0.1 6,-0.0 -2,-0.1 -0.275 9.5 154.1-168.5 68.5 26.4 8.8 -28.4 36 37 A P S S+ 0 0 118 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 0.839 76.1 12.5 -69.8 -34.6 26.7 12.2 -30.1 37 38 A D S S- 0 0 96 1,-0.0 3,-0.4 0, 0.0 4,-0.1 -0.752 77.4-109.1-133.6-179.7 26.1 10.7 -33.6 38 39 A D S > S+ 0 0 128 -2,-0.2 3,-1.5 1,-0.2 6,-0.2 0.708 109.2 72.0 -85.0 -22.7 24.9 7.4 -35.2 39 40 A K T 3 S+ 0 0 132 1,-0.3 -1,-0.2 5,-0.1 6,-0.2 0.649 71.8 90.9 -66.7 -13.8 28.4 6.6 -36.4 40 41 A Y T 3 + 0 0 110 -3,-0.4 -1,-0.3 4,-0.1 2,-0.2 0.805 66.6 93.7 -51.5 -30.5 29.3 5.9 -32.8 41 42 A S S <> S- 0 0 37 -3,-1.5 4,-0.9 1,-0.2 3,-0.2 -0.481 71.6-148.6 -69.4 129.7 28.2 2.3 -33.5 42 43 A R H > S+ 0 0 217 -2,-0.2 4,-2.1 1,-0.2 -1,-0.2 0.774 96.3 63.2 -68.4 -26.3 31.1 0.1 -34.5 43 44 A Q H 4 S+ 0 0 123 1,-0.2 -1,-0.2 2,-0.2 -4,-0.1 0.903 97.1 55.0 -64.9 -42.5 28.8 -1.9 -36.8 44 45 A R H 4 S+ 0 0 172 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.2 0.831 110.6 47.1 -60.2 -32.6 28.1 1.1 -39.0 45 46 A V H < S+ 0 0 101 -4,-0.9 -1,-0.2 -6,-0.2 -2,-0.2 0.885 92.5 92.3 -76.3 -40.9 31.8 1.4 -39.5 46 47 A T S < S- 0 0 58 -4,-2.1 3,-0.2 1,-0.1 0, 0.0 -0.298 86.4-109.7 -57.6 133.4 32.4 -2.2 -40.3 47 48 A L - 0 0 135 1,-0.2 2,-0.1 2,-0.1 -1,-0.1 0.087 60.3 -51.7 -54.9 175.0 32.2 -3.0 -44.0 48 49 A K - 0 0 152 1,-0.2 3,-0.3 2,-0.1 -1,-0.2 -0.323 49.6-170.3 -55.4 120.4 29.3 -5.0 -45.4 49 50 A K + 0 0 145 -3,-0.2 -1,-0.2 1,-0.2 -2,-0.1 0.005 69.2 84.5-102.7 26.8 28.9 -8.2 -43.4 50 51 A R S S- 0 0 195 2,-0.0 -1,-0.2 0, 0.0 3,-0.1 0.717 74.3-154.4 -97.2 -27.7 26.4 -9.7 -45.8 51 52 A F + 0 0 157 -3,-0.3 2,-1.7 1,-0.2 -2,-0.1 0.906 24.3 171.1 52.2 45.9 29.0 -11.1 -48.3 52 53 A G + 0 0 42 2,-0.1 -1,-0.2 0, 0.0 2,-0.1 -0.383 15.5 156.1 -85.3 60.2 26.4 -11.0 -51.1 53 54 A L - 0 0 157 -2,-1.7 0, 0.0 -3,-0.1 0, 0.0 -0.336 38.3-145.8 -81.9 166.5 28.9 -11.8 -53.8 54 55 A V - 0 0 134 -2,-0.1 2,-0.1 2,-0.0 -2,-0.1 -0.577 20.8-175.6-135.5 72.0 28.0 -13.3 -57.2 55 56 A P + 0 0 121 0, 0.0 2,-0.2 0, 0.0 -2,-0.0 -0.412 34.3 91.1 -69.8 140.9 30.8 -15.7 -58.3 56 57 A G 0 0 77 -2,-0.1 -2,-0.0 0, 0.0 0, 0.0 -0.846 360.0 360.0 175.1-136.4 30.5 -17.2 -61.8 57 58 A Q 0 0 243 -2,-0.2 0, 0.0 0, 0.0 0, 0.0 0.558 360.0 360.0 -76.9 360.0 31.5 -16.6 -65.4