==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 17-AUG-05 2AQC . COMPND 2 MOLECULE: RIBOSOME BIOGENESIS PROTEIN NOP10; . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOCALDOCOCCUS JANNASCHII; . AUTHOR T.HAMMA,S.L.REICHOW,G.VARANI,A.R.FERRE-D'AMARE . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7099.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 19 30.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 -2 A G 0 0 122 0, 0.0 4,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 168.5 2.9 -15.7 12.1 2 -1 A S + 0 0 125 2,-0.1 2,-0.3 1,-0.0 0, 0.0 0.947 360.0 57.2 -68.8 -50.4 -0.8 -16.6 11.8 3 0 A H S S- 0 0 140 1,-0.1 2,-0.2 0, 0.0 -1,-0.0 -0.663 92.1-117.0 -86.5 137.0 -2.0 -13.2 10.9 4 1 A M - 0 0 174 -2,-0.3 2,-0.3 1,-0.1 -2,-0.1 -0.497 27.1-130.7 -73.7 138.1 -0.5 -11.4 7.8 5 2 A V - 0 0 117 -2,-0.2 3,-0.1 1,-0.1 -1,-0.1 -0.646 31.1 -91.8 -91.0 146.8 1.4 -8.2 8.5 6 3 A E - 0 0 150 -2,-0.3 -1,-0.1 1,-0.1 0, 0.0 -0.213 53.9 -93.5 -55.1 141.6 0.8 -5.0 6.5 7 4 A M - 0 0 99 1,-0.1 -1,-0.1 -3,-0.1 3,-0.1 -0.057 50.1 -91.6 -53.2 158.7 3.1 -4.6 3.5 8 5 A R - 0 0 171 1,-0.1 -1,-0.1 -3,-0.1 25,-0.0 0.106 68.1 -48.6 -62.2-176.7 6.3 -2.7 3.8 9 6 A M - 0 0 50 1,-0.1 11,-0.2 24,-0.1 2,-0.2 -0.036 61.6-138.3 -52.2 159.4 6.6 1.0 3.2 10 7 A K E -A 19 0A 29 9,-2.6 9,-2.4 23,-0.1 2,-0.3 -0.596 4.7-131.8-115.8 178.3 5.2 2.4 -0.0 11 8 A K E -AB 18 32A 55 21,-3.1 21,-3.1 7,-0.2 7,-0.2 -0.984 25.9-105.0-135.8 145.9 6.2 5.0 -2.6 12 9 A C - 0 0 0 5,-2.0 19,-0.2 -2,-0.3 4,-0.2 -0.556 20.4-155.5 -72.4 117.6 4.5 7.9 -4.3 13 10 A P S S+ 0 0 64 0, 0.0 -1,-0.2 0, 0.0 18,-0.1 0.534 94.0 52.6 -69.8 -5.4 3.6 7.0 -7.9 14 11 A K S S+ 0 0 156 15,-0.1 17,-0.1 3,-0.1 -2,-0.0 0.834 133.0 1.8 -96.5 -43.8 3.6 10.7 -8.7 15 12 A C S S- 0 0 78 2,-0.1 -4,-0.0 0, 0.0 0, 0.0 0.786 92.4-117.3-109.2 -56.8 7.1 11.6 -7.4 16 13 A G + 0 0 30 1,-0.2 2,-0.4 -4,-0.2 15,-0.0 0.605 54.6 150.7 121.1 25.1 8.7 8.5 -6.1 17 14 A L - 0 0 60 -5,-0.1 -5,-2.0 1,-0.0 2,-0.2 -0.733 38.2-134.7 -91.2 133.9 9.2 9.2 -2.4 18 15 A Y E +A 11 0A 122 -2,-0.4 2,-0.3 -7,-0.2 -7,-0.2 -0.603 39.8 136.8 -87.5 146.7 9.2 6.3 0.1 19 16 A T E -A 10 0A 25 -9,-2.4 -9,-2.6 -2,-0.2 3,-0.2 -0.971 52.5-131.4-175.6 166.8 7.2 6.5 3.3 20 17 A L S S+ 0 0 111 -2,-0.3 -9,-0.1 -11,-0.2 -2,-0.0 0.167 88.8 86.7-116.2 14.4 4.9 4.6 5.7 21 18 A K S S- 0 0 158 2,-0.3 -1,-0.1 -11,-0.1 3,-0.1 0.421 93.4-128.4 -92.6 -0.3 2.4 7.4 6.1 22 19 A E S S+ 0 0 78 -3,-0.2 9,-1.1 1,-0.1 2,-0.3 0.622 83.5 85.7 62.5 11.0 0.5 6.2 3.0 23 20 A I B S-C 30 0B 62 7,-0.3 -2,-0.3 -13,-0.1 7,-0.3 -0.998 81.3-120.5-144.0 145.4 0.8 9.8 1.9 24 21 A C > - 0 0 0 5,-1.8 4,-1.3 -2,-0.3 5,-0.2 -0.762 14.8-165.0 -90.1 111.1 3.4 11.9 0.0 25 22 A P T 4 S+ 0 0 103 0, 0.0 -1,-0.1 0, 0.0 -6,-0.0 0.552 85.7 62.9 -69.8 -6.8 4.5 14.8 2.2 26 23 A K T 4 S- 0 0 167 3,-0.1 -2,-0.0 -9,-0.0 -3,-0.0 0.958 129.5 -3.3 -82.0 -60.2 6.0 16.4 -0.9 27 24 A C T 4 S- 0 0 77 2,-0.1 -4,-0.0 0, 0.0 0, 0.0 0.756 98.0-111.9-102.7 -36.1 2.9 16.9 -3.1 28 25 A G < + 0 0 51 -4,-1.3 2,-0.4 1,-0.3 0, 0.0 0.691 66.6 137.9 108.0 27.8 0.2 15.4 -0.9 29 26 A E - 0 0 77 -5,-0.2 -5,-1.8 1,-0.1 -1,-0.3 -0.877 60.1 -99.5-109.3 138.0 -0.7 12.3 -2.9 30 27 A K B -C 23 0B 112 -2,-0.4 -7,-0.3 -7,-0.3 2,-0.2 -0.145 40.9-122.3 -50.9 143.4 -1.4 8.8 -1.4 31 28 A T - 0 0 9 -9,-1.1 2,-0.3 -19,-0.2 -19,-0.3 -0.625 24.7-159.8 -92.2 150.7 1.6 6.5 -1.7 32 29 A V B -B 11 0A 58 -21,-3.1 -21,-3.1 -2,-0.2 -10,-0.0 -0.909 34.0 -84.9-129.2 156.9 1.4 3.1 -3.5 33 30 A I - 0 0 49 -2,-0.3 -23,-0.1 -23,-0.2 -24,-0.1 -0.439 32.9-164.2 -63.4 113.2 3.5 -0.1 -3.4 34 31 A P S S+ 0 0 41 0, 0.0 -1,-0.2 0, 0.0 -24,-0.1 0.755 84.8 53.5 -69.7 -25.2 6.4 0.4 -5.8 35 32 A K S S+ 0 0 150 -3,-0.0 3,-0.1 3,-0.0 -2,-0.1 -0.667 80.4 179.8-113.9 75.6 7.1 -3.3 -5.9 36 33 A P - 0 0 64 0, 0.0 2,-0.3 0, 0.0 -4,-0.0 -0.145 40.8 -75.8 -69.7 167.8 3.8 -4.9 -6.7 37 34 A P + 0 0 102 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.494 43.8 175.3 -69.8 126.5 3.2 -8.7 -7.1 38 35 A K S S+ 0 0 189 -2,-0.3 2,-0.6 1,-0.2 -3,-0.0 0.754 70.1 51.0-100.2 -33.8 4.6 -10.2 -10.3 39 36 A F - 0 0 179 0, 0.0 2,-0.6 0, 0.0 -1,-0.2 -0.915 66.5-177.9-112.4 110.5 3.8 -13.8 -9.7 40 37 A S - 0 0 57 -2,-0.6 6,-0.0 1,-0.2 0, 0.0 -0.929 16.3-165.8-112.1 118.5 0.3 -14.7 -8.6 41 38 A L S S- 0 0 160 -2,-0.6 -1,-0.2 1,-0.1 0, 0.0 0.891 94.6 -7.8 -66.1 -40.5 -0.6 -18.3 -7.8 42 39 A E S S- 0 0 134 0, 0.0 -2,-0.1 0, 0.0 -1,-0.1 0.614 75.7-151.5-125.0 -37.1 -4.3 -17.5 -7.9 43 40 A D > + 0 0 87 -4,-0.1 3,-2.0 3,-0.1 4,-0.4 0.817 37.3 155.1 63.4 30.8 -4.6 -13.7 -8.2 44 41 A R T 3 S+ 0 0 212 1,-0.3 4,-0.3 2,-0.1 -1,-0.1 0.909 78.6 35.4 -54.3 -45.8 -7.9 -13.9 -6.4 45 42 A W T 3> S+ 0 0 182 1,-0.1 4,-0.7 2,-0.1 -1,-0.3 0.120 95.3 106.6 -95.5 20.1 -7.5 -10.3 -5.3 46 43 A G T X4 S+ 0 0 17 -3,-2.0 3,-2.6 2,-0.2 4,-0.3 0.975 88.3 21.5 -60.5 -87.4 -5.8 -9.4 -8.5 47 44 A K G >4 S+ 0 0 193 -4,-0.4 3,-2.3 1,-0.3 4,-0.4 0.794 113.3 76.0 -53.0 -28.9 -8.2 -7.3 -10.5 48 45 A Y G >4 S+ 0 0 135 -4,-0.3 3,-1.8 1,-0.3 -1,-0.3 0.790 76.2 76.8 -54.0 -28.3 -10.0 -6.6 -7.2 49 46 A R G XX S+ 0 0 160 -3,-2.6 3,-1.4 -4,-0.7 4,-0.6 0.818 83.7 64.7 -52.7 -32.3 -7.1 -4.2 -6.5 50 47 A R G <4 S+ 0 0 206 -3,-2.3 -1,-0.3 -4,-0.3 -2,-0.2 0.832 115.0 29.4 -61.3 -32.9 -8.9 -1.8 -8.9 51 48 A M G <4 S+ 0 0 152 -3,-1.8 -1,-0.3 -4,-0.4 -2,-0.2 0.009 97.6 92.9-115.5 25.5 -11.8 -1.6 -6.5 52 49 A L T <4 + 0 0 83 -3,-1.4 -2,-0.2 -5,-0.1 -3,-0.1 0.753 55.1 107.7 -88.0 -27.8 -9.8 -2.2 -3.3 53 50 A K < + 0 0 151 -4,-0.6 2,-0.3 -3,-0.1 -3,-0.0 -0.297 47.4 160.5 -54.7 125.3 -9.2 1.5 -2.6 54 51 A R - 0 0 225 2,-0.1 2,-0.7 -2,-0.0 -2,-0.1 -0.907 43.4-107.1-143.3 169.8 -11.3 2.5 0.4 55 52 A A + 0 0 103 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.877 54.1 137.7-106.9 105.7 -11.6 5.2 3.1 56 53 A L - 0 0 141 -2,-0.7 2,-0.5 2,-0.0 -2,-0.1 -0.900 37.9-149.1-151.9 118.0 -10.5 4.0 6.5 57 54 A K + 0 0 186 -2,-0.3 2,-0.3 2,-0.0 -2,-0.0 -0.766 24.5 176.6 -90.8 123.9 -8.4 5.8 9.1 58 55 A N - 0 0 88 -2,-0.5 2,-0.5 0, 0.0 -2,-0.0 -0.790 27.0-120.8-122.6 166.2 -6.3 3.5 11.3 59 56 A K - 0 0 171 -2,-0.3 2,-0.0 0, 0.0 -2,-0.0 -0.933 24.4-132.0-112.7 126.3 -3.7 4.1 14.1 60 57 A N - 0 0 134 -2,-0.5 2,-0.4 1,-0.0 0, 0.0 -0.337 18.2-139.7 -71.9 154.3 -0.2 2.8 13.8 61 58 A K - 0 0 176 -2,-0.0 2,-0.4 2,-0.0 -1,-0.0 -0.942 14.5-118.1-120.3 140.0 1.4 0.9 16.6 62 59 A A 0 0 105 -2,-0.4 0, 0.0 1,-0.1 0, 0.0 -0.596 360.0 360.0 -77.3 128.5 5.0 1.1 17.9 63 60 A E 0 0 237 -2,-0.4 -1,-0.1 0, 0.0 -2,-0.0 0.459 360.0 360.0 -72.7 360.0 7.0 -2.1 17.6