==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN/RNA 22-AUG-97 1AUD . COMPND 2 MOLECULE: RNA 3UTR; . SOURCE 2 SYNTHETIC: YES; . AUTHOR F.H.-T.ALLAIN,C.C.GUBSER,P.W.A.HOWE,K.NAGAI,D.NEUHAUS, . 101 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7366.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 53.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 16.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 4.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 24.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 146 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 179.8 20.5 -5.5 -42.3 2 2 A V - 0 0 144 0, 0.0 2,-0.4 0, 0.0 3,-0.0 -0.654 360.0-177.0-132.7 80.5 24.2 -5.4 -41.3 3 3 A P - 0 0 92 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.619 25.9-140.5 -78.3 126.7 24.7 -3.5 -37.9 4 4 A E - 0 0 152 -2,-0.4 0, 0.0 2,-0.0 0, 0.0 0.903 30.6-158.2 -55.0 -38.5 28.4 -3.2 -36.9 5 5 A T + 0 0 108 1,-0.1 79,-0.0 80,-0.1 0, 0.0 0.859 16.1 180.0 60.1 104.4 27.3 -3.8 -33.3 6 6 A R - 0 0 103 80,-0.1 2,-0.2 79,-0.0 -1,-0.1 -0.984 28.9-111.3-138.5 150.7 30.0 -2.5 -30.9 7 7 A P + 0 0 86 0, 0.0 2,-0.3 0, 0.0 55,-0.1 -0.507 44.1 161.3 -78.5 145.4 30.4 -2.3 -27.1 8 8 A N - 0 0 9 53,-0.3 56,-0.2 -2,-0.2 57,-0.1 -0.881 48.0-109.6-150.5-177.6 30.2 1.1 -25.4 9 9 A H S S+ 0 0 29 -2,-0.3 49,-1.5 1,-0.2 2,-0.4 0.886 102.6 40.6 -89.2 -43.1 29.6 2.7 -21.9 10 10 A T E S-A 57 0A 4 78,-0.4 76,-1.3 47,-0.2 2,-0.3 -0.846 77.0-145.8-105.9 142.0 26.1 4.2 -22.6 11 11 A I E -AB 56 85A 0 45,-1.5 45,-1.6 -2,-0.4 2,-0.5 -0.819 6.0-143.9-106.5 146.8 23.4 2.3 -24.5 12 12 A Y E -AB 55 84A 47 72,-1.6 72,-1.7 -2,-0.3 2,-0.4 -0.924 12.5-164.6-110.8 123.2 20.9 4.0 -26.8 13 13 A I E +AB 54 83A 2 41,-1.6 41,-1.4 -2,-0.5 2,-0.2 -0.879 14.3 171.0-106.9 135.7 17.3 2.6 -27.0 14 14 A N + 0 0 39 68,-1.0 39,-0.2 -2,-0.4 68,-0.2 -0.697 47.5 62.1-130.4-175.2 14.9 3.6 -29.8 15 15 A N S S+ 0 0 108 37,-0.4 -1,-0.2 -2,-0.2 38,-0.1 0.926 73.8 145.8 63.9 41.6 11.5 2.6 -31.2 16 16 A L - 0 0 17 36,-1.4 -1,-0.1 1,-0.2 2,-0.1 -0.370 56.8 -73.0-100.2-175.2 9.8 3.6 -27.9 17 17 A N - 0 0 32 -2,-0.1 3,-0.4 1,-0.1 -1,-0.2 -0.440 33.1-136.6 -76.5 154.0 6.3 5.1 -27.3 18 18 A E S S+ 0 0 147 1,-0.2 -1,-0.1 34,-0.1 34,-0.1 -0.099 92.8 61.5-101.5 37.7 5.7 8.8 -28.3 19 19 A K + 0 0 157 2,-0.1 2,-0.3 0, 0.0 -1,-0.2 0.007 68.3 125.0-149.5 34.9 3.8 9.7 -25.2 20 20 A I - 0 0 18 -3,-0.4 2,-0.0 1,-0.1 -4,-0.0 -0.725 53.0-128.5 -98.8 150.7 6.1 9.2 -22.1 21 21 A K > - 0 0 121 -2,-0.3 4,-1.4 1,-0.1 5,-0.2 -0.237 23.6-112.4 -84.2-178.6 6.9 11.9 -19.6 22 22 A K H > S+ 0 0 117 2,-0.2 4,-1.5 1,-0.1 5,-0.2 0.888 117.3 42.6 -85.0 -38.5 10.5 12.8 -18.6 23 23 A D H > S+ 0 0 114 2,-0.2 4,-1.1 1,-0.2 -1,-0.1 0.771 115.6 52.2 -77.0 -22.8 10.2 11.5 -15.0 24 24 A E H > S+ 0 0 88 2,-0.2 4,-1.5 3,-0.1 -2,-0.2 0.919 111.0 43.6 -80.1 -42.8 8.4 8.4 -16.2 25 25 A L H X S+ 0 0 13 -4,-1.4 4,-1.7 1,-0.2 -2,-0.2 0.900 116.3 47.9 -70.2 -36.4 10.9 7.3 -18.9 26 26 A K H X S+ 0 0 83 -4,-1.5 4,-1.5 1,-0.2 -1,-0.2 0.849 109.0 54.5 -72.9 -30.7 13.9 8.0 -16.6 27 27 A K H X S+ 0 0 156 -4,-1.1 4,-0.8 2,-0.2 -1,-0.2 0.871 109.3 47.3 -71.6 -33.3 12.3 6.0 -13.7 28 28 A S H X S+ 0 0 38 -4,-1.5 4,-1.8 2,-0.2 3,-0.4 0.906 110.5 50.9 -75.3 -38.8 11.8 2.9 -15.8 29 29 A L H X S+ 0 0 1 -4,-1.7 4,-1.4 1,-0.2 5,-0.5 0.884 110.1 50.4 -66.5 -34.7 15.4 2.9 -17.3 30 30 A H H < S+ 0 0 90 -4,-1.5 4,-0.3 3,-0.2 -1,-0.2 0.732 109.4 51.9 -76.2 -19.3 16.9 3.2 -13.7 31 31 A A H X S+ 0 0 47 -4,-0.8 4,-0.7 -3,-0.4 -2,-0.2 0.889 118.9 32.0 -84.6 -39.4 14.8 0.2 -12.4 32 32 A I H >X S+ 0 0 37 -4,-1.8 4,-0.8 2,-0.2 3,-0.5 0.956 123.3 43.0 -82.6 -54.9 15.7 -2.3 -15.1 33 33 A F H >X S+ 0 0 0 -4,-1.4 4,-1.5 -5,-0.3 3,-0.8 0.889 110.1 59.2 -59.8 -36.3 19.3 -1.3 -16.0 34 34 A S H 34 S+ 0 0 39 -5,-0.5 -1,-0.2 -4,-0.3 -2,-0.2 0.896 91.0 69.7 -61.5 -36.4 20.2 -0.8 -12.3 35 35 A R H << S+ 0 0 202 -4,-0.7 -1,-0.2 -3,-0.5 -2,-0.2 0.892 103.0 44.7 -49.6 -38.6 19.3 -4.5 -11.6 36 36 A F H << S- 0 0 88 -3,-0.8 2,-0.2 -4,-0.8 -1,-0.2 0.978 134.4 -36.6 -71.9 -54.0 22.5 -5.5 -13.6 37 37 A G S < S- 0 0 23 -4,-1.5 2,-0.4 26,-0.1 -1,-0.1 -0.753 81.8 -57.0-149.9-162.4 24.8 -2.9 -11.9 38 38 A Q - 0 0 137 -2,-0.2 21,-1.4 -3,-0.1 2,-0.3 -0.735 48.0-145.0 -91.1 135.6 24.8 0.7 -10.5 39 39 A I E -C 58 0A 10 -2,-0.4 19,-0.2 19,-0.2 3,-0.1 -0.749 7.4-158.0 -99.0 147.2 23.8 3.5 -13.0 40 40 A L E - 0 0 61 17,-1.5 2,-0.3 1,-0.3 -1,-0.2 0.931 66.3 -33.7 -87.7 -53.9 25.4 7.0 -13.0 41 41 A D E - 0 0 101 16,-0.3 16,-1.8 2,-0.0 2,-0.4 -0.989 48.3-138.7-160.6 166.1 22.7 9.1 -14.7 42 42 A I E -C 56 0A 14 -2,-0.3 2,-0.4 14,-0.2 14,-0.2 -0.993 13.5-163.9-136.1 131.3 19.9 8.9 -17.4 43 43 A L E -C 55 0A 91 12,-1.6 12,-1.7 -2,-0.4 2,-0.4 -0.919 5.0-174.3-116.5 141.3 19.1 11.6 -20.0 44 44 A V - 0 0 24 -2,-0.4 2,-0.3 10,-0.2 10,-0.1 -0.993 3.6-165.9-134.5 132.3 15.9 11.8 -22.1 45 45 A S - 0 0 56 8,-0.5 7,-0.4 -2,-0.4 8,-0.3 -0.888 13.9-160.4-117.5 149.5 15.1 14.3 -25.0 46 46 A R + 0 0 148 -2,-0.3 5,-0.1 5,-0.1 2,-0.1 -0.144 49.1 124.7-117.8 39.9 11.8 15.1 -26.6 47 47 A S S S- 0 0 60 3,-0.1 -2,-0.1 1,-0.1 0, 0.0 -0.322 79.6 -91.5 -88.9 178.4 13.0 16.7 -29.9 48 48 A L S > S+ 0 0 146 1,-0.2 3,-0.9 2,-0.1 -1,-0.1 0.981 130.4 40.6 -55.9 -56.8 12.0 15.5 -33.4 49 49 A K T 3 S+ 0 0 169 1,-0.3 2,-0.9 2,-0.1 -1,-0.2 0.920 118.3 49.9 -59.1 -40.2 15.0 13.1 -33.7 50 50 A M T 3 S+ 0 0 47 1,-0.1 3,-0.3 -36,-0.0 -1,-0.3 -0.340 71.5 130.0 -94.1 56.6 14.5 12.1 -30.0 51 51 A R S < S+ 0 0 128 -2,-0.9 -1,-0.1 -3,-0.9 -5,-0.1 -0.242 85.8 5.8-101.5 47.6 10.8 11.3 -30.4 52 52 A G S S+ 0 0 13 -7,-0.4 -36,-1.4 1,-0.2 -37,-0.4 0.419 109.1 77.6 143.9 60.0 10.9 7.9 -28.7 53 53 A Q - 0 0 24 -3,-0.3 -8,-0.5 -8,-0.3 2,-0.3 -0.985 43.2-167.5-173.7 167.4 14.4 7.0 -27.2 54 54 A A E -A 13 0A 0 -41,-1.4 -41,-1.6 -2,-0.3 2,-0.4 -0.927 17.5-124.9-155.5 179.7 16.8 7.6 -24.3 55 55 A F E -AC 12 43A 51 -12,-1.7 -12,-1.6 -2,-0.3 2,-0.4 -0.995 17.7-167.8-137.9 133.5 20.4 7.0 -23.1 56 56 A V E -AC 11 42A 0 -45,-1.6 -45,-1.5 -2,-0.4 2,-0.5 -0.958 13.1-143.7-123.1 139.8 21.6 5.3 -19.9 57 57 A I E -A 10 0A 0 -16,-1.8 -17,-1.5 -2,-0.4 -16,-0.3 -0.864 16.3-153.6-101.8 126.0 25.2 5.3 -18.5 58 58 A F E - C 0 39A 0 -49,-1.5 -19,-0.2 -2,-0.5 6,-0.1 -0.682 25.8-117.4 -96.4 152.3 26.4 2.0 -16.8 59 59 A K S S+ 0 0 115 -21,-1.4 2,-0.3 -2,-0.3 -1,-0.1 0.902 99.3 8.8 -54.0 -39.1 29.0 1.9 -14.1 60 60 A E S > S- 0 0 117 -22,-0.1 4,-1.0 1,-0.1 3,-0.3 -0.947 78.9-110.6-139.1 161.3 31.3 -0.1 -16.4 61 61 A V H >> S+ 0 0 58 -2,-0.3 4,-1.4 1,-0.2 3,-0.7 0.900 118.2 57.0 -59.9 -37.5 31.3 -1.1 -20.1 62 62 A S H 3> S+ 0 0 69 1,-0.2 4,-1.7 2,-0.2 5,-0.3 0.898 96.5 63.4 -62.4 -37.2 30.6 -4.8 -19.1 63 63 A S H 3> S+ 0 0 13 -3,-0.3 4,-1.5 1,-0.2 -1,-0.2 0.869 104.7 47.0 -57.1 -33.2 27.4 -3.7 -17.2 64 64 A A H < S+ 0 0 19 -4,-1.0 2,-1.4 -5,-0.4 3,-0.6 -0.026 74.8 135.3-101.4 34.2 16.9 -6.8 -22.8 72 72 A Q T 3 S- 0 0 95 -3,-0.4 10,-0.1 1,-0.3 -4,-0.1 -0.627 89.6 -12.0 -82.4 93.3 17.5 -7.5 -26.6 73 73 A G T 3 S+ 0 0 27 -2,-1.4 -1,-0.3 8,-0.4 9,-0.3 0.964 99.2 150.3 82.5 62.7 14.0 -6.7 -28.0 74 74 A F E < -D 81 0B 101 7,-1.5 7,-1.0 -3,-0.6 2,-0.3 -0.818 50.9 -91.7-124.9 167.3 11.9 -6.6 -24.8 75 75 A P E +D 80 0B 93 0, 0.0 -2,-0.0 0, 0.0 -1,-0.0 -0.558 46.9 156.4 -78.0 137.4 8.7 -4.7 -23.6 76 76 A F S S+ 0 0 35 3,-1.7 2,-0.3 -2,-0.3 -60,-0.1 0.625 74.1 14.9-126.2 -59.7 9.3 -1.3 -21.9 77 77 A Y S S- 0 0 41 2,-0.4 -52,-0.0 -57,-0.0 -49,-0.0 -0.534 128.7 -62.5-119.0 67.4 6.2 0.9 -22.2 78 78 A D S S+ 0 0 162 -2,-0.3 -1,-0.0 1,-0.2 0, 0.0 0.917 119.3 77.4 60.5 40.3 3.4 -1.4 -23.3 79 79 A K S S- 0 0 107 -62,-0.0 -3,-1.7 2,-0.0 -2,-0.4 -0.947 84.7 -98.1-173.1 152.9 5.3 -2.2 -26.6 80 80 A P E +D 75 0B 99 0, 0.0 2,-0.3 0, 0.0 -6,-0.0 -0.491 41.8 174.2 -77.7 146.1 8.2 -4.2 -28.0 81 81 A M E -D 74 0B 8 -7,-1.0 -7,-1.5 -2,-0.2 -8,-0.4 -0.963 23.0-141.7-155.0 135.8 11.5 -2.4 -28.5 82 82 A R - 0 0 185 -2,-0.3 -68,-1.0 -9,-0.3 2,-0.4 -0.739 18.7-139.7 -97.6 146.7 15.1 -3.4 -29.6 83 83 A I E -B 13 0A 2 -2,-0.3 2,-0.4 -12,-0.3 -70,-0.2 -0.879 14.6-169.3-108.3 137.2 18.2 -1.9 -27.9 84 84 A Q E -B 12 0A 100 -72,-1.7 -72,-1.6 -2,-0.4 -2,-0.0 -0.972 32.4-104.8-123.1 135.0 21.3 -0.9 -29.9 85 85 A Y E -B 11 0A 34 -2,-0.4 -74,-0.2 -74,-0.2 -80,-0.1 -0.078 46.8 -99.2 -50.3 157.6 24.6 0.1 -28.2 86 86 A A - 0 0 8 -76,-1.3 -80,-0.1 1,-0.1 -1,-0.1 -0.264 20.3-132.3 -75.0 169.8 25.3 3.9 -28.3 87 87 A K S S+ 0 0 168 2,-0.1 2,-0.2 -79,-0.0 -1,-0.1 0.856 85.3 23.0 -92.0 -39.7 27.7 5.4 -30.9 88 88 A T S S- 0 0 108 1,-0.1 -78,-0.4 -80,-0.0 -79,-0.1 -0.626 87.6 -99.0-117.4 179.6 29.8 7.6 -28.6 89 89 A D - 0 0 103 -2,-0.2 2,-0.3 -80,-0.1 -1,-0.1 -0.253 46.0 -89.1 -89.0-176.4 30.6 7.6 -24.9 90 90 A S > - 0 0 22 1,-0.1 4,-0.7 -2,-0.1 3,-0.2 -0.699 22.6-132.0 -95.1 148.3 28.9 9.8 -22.2 91 91 A D H > S+ 0 0 146 -2,-0.3 4,-0.6 1,-0.2 3,-0.3 0.808 105.6 62.3 -68.8 -26.0 30.2 13.3 -21.3 92 92 A I H >> S+ 0 0 54 1,-0.2 3,-1.2 2,-0.2 4,-1.0 0.929 99.0 54.4 -67.1 -39.2 30.0 12.4 -17.6 93 93 A I H 3> S+ 0 0 25 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.781 88.5 80.6 -65.0 -21.8 32.6 9.6 -18.0 94 94 A A H 3< S+ 0 0 33 -4,-0.7 6,-0.3 -3,-0.3 -1,-0.2 0.907 106.8 28.9 -51.7 -38.1 35.0 12.2 -19.6 95 95 A K H XX S+ 0 0 130 -3,-1.2 4,-1.3 -4,-0.6 3,-0.8 0.651 106.9 74.2 -97.1 -15.5 35.8 13.3 -16.0 96 96 A M H 3< S+ 0 0 116 -4,-1.0 -2,-0.2 1,-0.2 -3,-0.1 0.896 81.2 71.8 -65.4 -35.8 35.2 9.9 -14.3 97 97 A K T 3< S- 0 0 147 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.1 0.885 136.2 -51.1 -47.5 -35.5 38.5 8.5 -15.8 98 98 A G T <4 S- 0 0 25 -3,-0.8 -2,-0.2 -4,-0.2 -1,-0.2 0.102 91.3 -55.9 157.9 78.0 40.2 10.9 -13.2 99 99 A T S < S- 0 0 115 -4,-1.3 -4,-0.1 1,-0.1 -3,-0.1 0.855 103.1 -65.4 38.7 46.3 39.2 14.6 -13.0 100 100 A F 0 0 142 -5,-0.4 -1,-0.1 -6,-0.3 -5,-0.1 0.919 360.0 360.0 45.1 91.1 40.0 15.0 -16.7 101 101 A V 0 0 168 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.859 360.0 360.0 -97.0 360.0 43.8 14.4 -16.8