==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 29-AUG-97 1AUM . COMPND 2 MOLECULE: HIV CAPSID; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR C.P.HILL,T.R.GAMBLE,S.YOO,F.F.VAJDOS,U.K.VON SCHWEDLER, . 70 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4796.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 12.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 33 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 4.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 2 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 151 A L 0 0 84 0, 0.0 17,-0.0 0, 0.0 21,-0.0 0.000 360.0 360.0 360.0 103.0 25.2 36.3 -0.0 2 152 A D + 0 0 150 16,-0.1 2,-0.2 2,-0.0 16,-0.1 0.727 360.0 106.2 -78.5 -25.6 23.3 37.8 2.9 3 153 A I + 0 0 20 14,-0.1 2,-0.3 15,-0.1 40,-0.0 -0.396 42.1 166.9 -63.8 122.9 20.7 35.0 3.0 4 154 A R - 0 0 156 -2,-0.2 2,-0.4 38,-0.0 40,-0.2 -0.998 39.7-107.3-137.3 137.5 21.2 32.7 6.0 5 155 A Q - 0 0 15 38,-2.5 6,-0.1 -2,-0.3 43,-0.1 -0.502 32.1-127.3 -70.0 123.8 18.7 30.1 7.3 6 156 A G > - 0 0 25 -2,-0.4 3,-1.8 1,-0.1 39,-0.2 -0.366 25.9-111.6 -64.1 148.4 17.1 31.0 10.6 7 157 A P T 3 S+ 0 0 99 0, 0.0 -1,-0.1 0, 0.0 40,-0.1 0.631 119.7 31.5 -57.8 -14.0 17.4 28.3 13.3 8 158 A K T 3 S+ 0 0 204 2,-0.1 -2,-0.1 3,-0.0 -3,-0.0 0.250 92.7 115.5-124.8 8.0 13.6 27.7 13.0 9 159 A E S < S- 0 0 36 -3,-1.8 36,-0.2 1,-0.1 5,-0.1 -0.691 73.2-114.1 -83.7 126.5 13.2 28.5 9.3 10 160 A P >> - 0 0 50 0, 0.0 4,-1.7 0, 0.0 3,-0.5 -0.283 25.2-121.7 -56.9 141.8 12.0 25.6 7.2 11 161 A F H 3> S+ 0 0 3 57,-0.7 4,-2.8 1,-0.2 5,-0.1 0.865 109.7 56.4 -54.8 -42.0 14.8 24.6 4.7 12 162 A R H 3> S+ 0 0 145 58,-0.3 4,-2.1 2,-0.2 -1,-0.2 0.858 106.0 51.0 -60.3 -37.0 12.6 25.1 1.6 13 163 A D H <> S+ 0 0 82 -3,-0.5 4,-2.1 2,-0.2 -1,-0.2 0.922 111.2 47.5 -65.5 -44.7 11.8 28.7 2.7 14 164 A Y H X S+ 0 0 0 -4,-1.7 4,-3.1 1,-0.2 -2,-0.2 0.927 109.6 54.4 -61.7 -44.2 15.5 29.4 3.1 15 165 A V H X S+ 0 0 3 -4,-2.8 4,-2.9 1,-0.2 -2,-0.2 0.910 107.7 50.4 -56.4 -43.5 16.1 27.8 -0.3 16 166 A D H X S+ 0 0 69 -4,-2.1 4,-1.4 2,-0.2 -1,-0.2 0.900 112.3 45.0 -64.7 -41.3 13.5 30.2 -1.9 17 167 A R H X S+ 0 0 85 -4,-2.1 4,-1.9 2,-0.2 3,-0.4 0.952 113.6 51.6 -66.7 -44.4 15.1 33.3 -0.4 18 168 A F H X S+ 0 0 3 -4,-3.1 4,-2.0 1,-0.2 -2,-0.2 0.924 111.2 46.7 -55.0 -50.0 18.5 32.0 -1.4 19 169 A Y H X S+ 0 0 36 -4,-2.9 4,-2.5 1,-0.2 -1,-0.2 0.753 105.5 59.9 -68.4 -22.8 17.4 31.4 -5.0 20 170 A K H X S+ 0 0 129 -4,-1.4 4,-1.3 -3,-0.4 -1,-0.2 0.920 108.8 43.9 -71.1 -40.6 15.8 34.9 -5.1 21 171 A T H X S+ 0 0 45 -4,-1.9 4,-0.5 1,-0.2 -2,-0.2 0.894 113.8 51.7 -68.7 -38.6 19.1 36.5 -4.4 22 172 A L H ><>S+ 0 0 11 -4,-2.0 3,-1.4 1,-0.2 5,-1.1 0.901 104.7 55.2 -65.2 -41.7 20.8 34.1 -6.9 23 173 A R H ><5S+ 0 0 154 -4,-2.5 3,-2.1 1,-0.3 -1,-0.2 0.844 96.1 67.0 -61.3 -33.3 18.3 34.9 -9.7 24 174 A A H 3<5S+ 0 0 74 -4,-1.3 -1,-0.3 1,-0.3 -2,-0.2 0.771 102.8 46.7 -59.0 -25.0 19.2 38.6 -9.3 25 175 A E T <<5S- 0 0 146 -3,-1.4 -1,-0.3 -4,-0.5 -2,-0.2 0.331 105.0-130.3 -98.6 4.1 22.6 37.7 -10.6 26 176 A Q T < 5 - 0 0 178 -3,-2.1 -3,-0.2 1,-0.1 -2,-0.1 0.876 37.4-165.0 46.0 46.3 21.3 35.7 -13.5 27 177 A A < - 0 0 16 -5,-1.1 -1,-0.1 1,-0.1 2,-0.1 -0.261 12.8-123.2 -62.8 145.1 23.6 32.9 -12.5 28 178 A S > - 0 0 64 -3,-0.1 4,-2.8 1,-0.1 5,-0.2 -0.249 32.2 -97.3 -77.7 176.9 24.3 30.1 -15.0 29 179 A Q H > S+ 0 0 112 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.898 126.0 53.7 -63.7 -40.8 23.7 26.4 -14.2 30 180 A E H > S+ 0 0 119 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.930 111.5 44.0 -59.0 -47.2 27.4 26.0 -13.3 31 181 A V H > S+ 0 0 63 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.917 110.8 54.8 -65.2 -42.6 27.3 28.9 -10.9 32 182 A K H X S+ 0 0 69 -4,-2.8 4,-2.2 1,-0.2 -2,-0.2 0.908 109.6 48.4 -56.1 -42.3 24.0 27.7 -9.5 33 183 A N H X S+ 0 0 68 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.928 111.0 48.7 -63.6 -47.6 25.7 24.3 -8.8 34 184 A W H X S+ 0 0 144 -4,-2.3 4,-1.7 1,-0.2 5,-0.2 0.898 112.6 49.1 -59.8 -42.3 28.7 25.9 -7.2 35 185 A M H <>S+ 0 0 33 -4,-2.8 5,-2.7 2,-0.2 6,-0.3 0.888 110.3 50.1 -66.5 -37.7 26.5 28.0 -5.0 36 186 A T H <>S+ 0 0 9 -4,-2.2 5,-0.5 -5,-0.2 -2,-0.2 0.896 112.4 47.6 -67.0 -40.1 24.4 25.0 -3.9 37 187 A E H <5S+ 0 0 95 -4,-2.3 -1,-0.2 -5,-0.1 -2,-0.2 0.784 129.6 18.5 -67.6 -37.6 27.5 23.0 -3.0 38 188 A T T X5S+ 0 0 45 -4,-1.7 4,-3.3 -5,-0.2 3,-0.5 0.765 128.3 26.3 -99.4 -88.3 29.0 25.9 -1.0 39 189 A L H >5S+ 0 0 43 -5,-0.2 4,-2.7 1,-0.2 -3,-0.2 0.850 116.8 57.3 -53.2 -41.0 26.9 28.8 0.3 40 190 A L H 44 - 0 0 14 -39,-0.2 4,-3.4 -36,-0.2 5,-0.3 -0.188 43.0 -94.1 -71.4 167.1 21.3 26.6 10.3 46 196 A P H > S+ 0 0 97 0, 0.0 4,-1.7 0, 0.0 -1,-0.1 0.919 123.5 45.7 -45.6 -54.6 23.2 24.4 12.8 47 197 A D H > S+ 0 0 124 1,-0.2 4,-1.3 2,-0.2 3,-0.0 0.942 120.5 37.8 -56.4 -53.5 20.8 21.4 12.6 48 198 A a H > S+ 0 0 5 1,-0.2 4,-3.0 2,-0.2 5,-0.3 0.929 109.3 60.9 -67.9 -44.2 20.6 21.4 8.8 49 199 A K H X S+ 0 0 86 -4,-3.4 4,-1.8 1,-0.2 -1,-0.2 0.869 103.9 51.1 -52.4 -42.5 24.3 22.3 8.1 50 200 A T H X S+ 0 0 103 -4,-1.7 4,-1.6 -5,-0.3 3,-0.4 0.973 113.0 44.3 -60.1 -54.3 25.4 19.1 9.9 51 201 A I H X S+ 0 0 77 -4,-1.3 4,-0.7 1,-0.2 3,-0.4 0.921 111.4 53.5 -56.5 -49.0 23.1 16.9 7.9 52 202 A L H >< S+ 0 0 6 -4,-3.0 3,-0.7 1,-0.2 4,-0.4 0.827 106.3 52.5 -59.4 -34.4 23.9 18.5 4.6 53 203 A K H >< S+ 0 0 113 -4,-1.8 3,-1.2 -3,-0.4 -1,-0.2 0.869 101.3 62.0 -69.7 -33.0 27.6 18.0 5.1 54 204 A A H 3< S+ 0 0 87 -4,-1.6 -1,-0.2 -3,-0.4 -2,-0.2 0.668 88.8 72.3 -66.9 -16.4 27.0 14.3 5.7 55 205 A L T << S- 0 0 75 -3,-0.7 -1,-0.2 -4,-0.7 -2,-0.2 0.803 91.9-149.3 -71.0 -28.6 25.6 13.9 2.2 56 206 A G X - 0 0 35 -3,-1.2 3,-1.1 -4,-0.4 -1,-0.1 -0.165 37.9 -21.4 84.9 176.1 29.0 14.3 0.5 57 207 A P T 3 S+ 0 0 136 0, 0.0 3,-0.1 0, 0.0 -4,-0.0 -0.150 122.1 22.6 -59.9 150.5 29.9 15.7 -2.9 58 208 A G T 3 S+ 0 0 64 1,-0.2 2,-0.1 0, 0.0 -2,-0.1 0.517 75.4 155.5 75.4 2.8 27.4 15.9 -5.7 59 209 A A < - 0 0 19 -3,-1.1 -1,-0.2 -7,-0.1 2,-0.1 -0.445 39.3-129.4 -62.5 135.7 24.3 15.9 -3.5 60 210 A T > - 0 0 57 -3,-0.1 4,-2.2 1,-0.1 5,-0.2 -0.416 17.4-110.0 -85.2 165.7 21.5 17.6 -5.4 61 211 A L H > S+ 0 0 31 1,-0.2 4,-3.0 2,-0.2 5,-0.2 0.905 122.1 55.1 -58.8 -40.3 19.3 20.4 -4.2 62 212 A E H > S+ 0 0 114 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.940 107.9 47.0 -58.9 -47.5 16.5 17.8 -4.2 63 213 A E H > S+ 0 0 105 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.848 112.5 50.6 -64.1 -34.1 18.5 15.5 -1.9 64 214 A M H X S+ 0 0 7 -4,-2.2 4,-2.2 2,-0.2 -2,-0.2 0.927 110.0 49.4 -69.2 -44.9 19.3 18.5 0.4 65 215 A M H < S+ 0 0 43 -4,-3.0 -2,-0.2 2,-0.2 -1,-0.2 0.892 112.3 48.4 -61.4 -40.1 15.7 19.5 0.6 66 216 A T H >< S+ 0 0 91 -4,-2.4 3,-1.6 -5,-0.2 -2,-0.2 0.973 109.8 52.8 -63.7 -49.3 14.7 15.9 1.4 67 217 A A H 3< S+ 0 0 34 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.2 0.846 120.3 31.7 -54.9 -39.7 17.5 15.7 4.1 68 218 A a T 3< S+ 0 0 18 -4,-2.2 -57,-0.7 -5,-0.1 -1,-0.3 0.078 85.9 143.4-110.4 27.0 16.3 18.8 5.9 69 219 A Q < 0 0 149 -3,-1.6 -3,-0.1 -4,-0.2 -4,-0.0 -0.250 360.0 360.0 -68.1 154.3 12.6 18.8 5.3 70 220 A G 0 0 119 0, 0.0 -58,-0.3 0, 0.0 -59,-0.2 -0.793 360.0 360.0 153.6 360.0 10.1 19.9 8.0