==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MYRISTYLATION 21-SEP-97 1AVV . COMPND 2 MOLECULE: NEGATIVE FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR S.AROLD,P.FRANKEN,C.DUMAS . 99 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6038.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 71 71.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 12.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 13.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 25.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 74 A V 0 0 117 0, 0.0 3,-0.2 0, 0.0 44,-0.0 0.000 360.0 360.0 360.0 142.3 73.8 63.1 80.1 2 75 A P - 0 0 95 0, 0.0 2,-0.6 0, 0.0 0, 0.0 0.017 360.0-101.8 -36.9 123.1 75.4 59.6 79.8 3 76 A L - 0 0 125 44,-0.1 44,-0.2 1,-0.0 43,-0.1 -0.394 57.4-174.8 -54.3 101.8 73.5 57.6 77.2 4 77 A R B -a 47 0A 90 42,-1.1 44,-0.8 -2,-0.6 2,-0.3 -0.452 20.8-105.2 -99.7 172.4 71.5 55.4 79.7 5 78 A P - 0 0 90 0, 0.0 2,-1.3 0, 0.0 5,-0.2 -0.716 24.4-117.0 -99.9 152.8 69.0 52.4 79.3 6 79 A M + 0 0 44 -2,-0.3 2,-0.2 42,-0.1 41,-0.0 -0.716 45.9 171.5 -92.1 87.4 65.2 52.3 79.6 7 80 A T > - 0 0 66 -2,-1.3 4,-2.5 1,-0.1 5,-0.2 -0.539 51.1-102.0 -89.1 161.6 64.8 50.0 82.6 8 81 A Y H > S+ 0 0 101 1,-0.2 4,-0.8 2,-0.2 5,-0.2 0.894 124.0 57.5 -53.8 -39.5 61.4 49.4 84.3 9 82 A K H >> S+ 0 0 147 1,-0.2 4,-2.2 2,-0.2 3,-1.9 0.978 109.0 42.9 -52.4 -61.6 62.6 51.7 87.0 10 83 A A H 3> S+ 0 0 3 1,-0.3 4,-2.9 2,-0.2 5,-0.4 0.872 106.2 63.9 -49.3 -46.6 63.2 54.6 84.6 11 84 A A H 3< S+ 0 0 0 -4,-2.5 58,-0.5 1,-0.2 4,-0.3 0.618 111.8 35.1 -55.7 -23.4 60.0 53.9 82.8 12 85 A V H X S+ 0 0 80 -4,-4.3 3,-2.9 1,-0.2 4,-1.6 0.964 105.3 58.2 -68.4 -58.8 55.2 59.4 86.9 17 90 A F H 3X S+ 0 0 63 -4,-2.5 4,-0.5 -5,-0.3 -1,-0.2 0.736 101.8 58.3 -42.9 -33.8 57.0 62.7 86.3 18 91 A L H 3< S+ 0 0 11 -4,-1.3 6,-0.6 2,-0.2 7,-0.3 0.618 109.0 43.4 -75.5 -19.7 54.8 63.3 83.2 19 92 A K H X4 S+ 0 0 91 -3,-2.9 3,-1.0 -4,-0.3 -2,-0.2 0.904 113.7 46.2 -89.4 -57.6 51.5 63.1 85.2 20 93 A E H 3< S+ 0 0 136 -4,-1.6 -2,-0.2 1,-0.3 -3,-0.1 0.468 128.3 26.4 -65.0 -2.8 52.4 65.2 88.2 21 94 A K T 3< S+ 0 0 147 -4,-0.5 -1,-0.3 -5,-0.3 2,-0.2 -0.216 113.5 50.7-155.4 52.5 54.0 68.0 86.1 22 95 A G X - 0 0 44 -3,-1.0 3,-0.6 1,-0.0 2,-0.4 -0.820 65.3-121.7 171.7 150.6 52.4 68.0 82.6 23 96 A G T 3 S+ 0 0 65 -2,-0.2 4,-0.4 1,-0.2 -4,-0.1 -0.198 71.3 112.6 -94.5 40.7 49.5 68.0 80.2 24 97 A L T 3 + 0 0 17 -6,-0.6 56,-0.4 -2,-0.4 2,-0.4 0.802 51.9 101.8 -77.7 -29.0 50.3 64.8 78.3 25 98 A E S < S- 0 0 74 -3,-0.6 56,-0.2 -7,-0.3 2,-0.2 -0.389 101.3 -3.1 -60.0 109.7 47.1 63.3 79.9 26 99 A G S S+ 0 0 15 54,-2.1 -1,-0.2 -2,-0.4 3,-0.1 -0.268 91.3 143.7 103.6 -45.4 44.5 63.5 77.2 27 100 A L - 0 0 55 -4,-0.4 53,-1.5 53,-0.2 -1,-0.3 0.089 59.8-105.3 -31.0 120.3 46.6 65.3 74.5 28 101 A I E -B 79 0B 85 51,-0.2 2,-0.4 1,-0.1 51,-0.3 -0.186 39.0-117.1 -54.6 141.6 45.7 63.9 71.1 29 102 A H E +B 78 0B 37 49,-4.8 49,-0.5 -3,-0.1 2,-0.3 -0.738 39.5 160.8 -95.1 138.8 48.3 61.6 69.6 30 103 A S > - 0 0 37 -2,-0.4 4,-2.4 1,-0.1 3,-0.3 -0.970 46.0-121.1-143.8 146.1 50.4 62.2 66.5 31 104 A Q H > S+ 0 0 117 -2,-0.3 4,-2.4 1,-0.2 5,-0.1 0.920 114.2 52.4 -55.6 -46.3 53.6 60.6 65.4 32 105 A R H > S+ 0 0 179 2,-0.2 4,-1.2 1,-0.2 -1,-0.2 0.804 108.4 49.9 -59.4 -38.5 55.3 64.0 65.3 33 106 A R H >> S+ 0 0 125 -3,-0.3 4,-1.9 2,-0.2 3,-0.7 0.960 108.9 51.1 -69.3 -42.6 54.2 64.9 68.8 34 107 A Q H 3X S+ 0 0 17 -4,-2.4 4,-3.9 1,-0.3 -2,-0.2 0.913 107.9 55.6 -57.3 -44.2 55.5 61.6 70.1 35 108 A D H 3X S+ 0 0 58 -4,-2.4 4,-3.0 1,-0.2 -1,-0.3 0.778 105.6 48.1 -59.2 -37.3 58.8 62.3 68.4 36 109 A I H X S+ 0 0 114 -4,-2.2 4,-3.8 2,-0.2 3,-0.7 0.955 110.5 46.1 -60.1 -58.4 63.2 65.7 74.4 41 114 A I H 3X>S+ 0 0 2 -4,-2.7 5,-2.1 1,-0.3 4,-1.2 0.924 109.3 56.8 -48.6 -54.4 63.4 63.0 77.0 42 115 A Y H 3<5S+ 0 0 71 -4,-2.1 -1,-0.3 -5,-0.3 -2,-0.2 0.820 116.5 36.1 -47.8 -38.2 66.4 61.5 75.2 43 116 A H H <<5S+ 0 0 137 -4,-1.3 -2,-0.2 -3,-0.7 -1,-0.2 0.945 123.3 41.8 -84.0 -51.3 68.1 64.9 75.6 44 117 A T H <5S+ 0 0 66 -4,-3.8 -3,-0.2 1,-0.1 -2,-0.2 0.992 137.7 11.3 -55.6 -76.9 66.7 65.9 79.0 45 118 A Q T <5S- 0 0 57 -4,-1.2 -3,-0.2 -5,-0.1 -1,-0.1 0.769 103.0-119.4 -78.1 -28.4 67.1 62.5 80.8 46 119 A G < + 0 0 2 -5,-2.1 -42,-1.1 1,-0.2 2,-0.6 0.574 55.6 147.2 103.6 10.9 69.2 60.7 78.2 47 120 A Y B -a 4 0A 25 -6,-0.4 -1,-0.2 -44,-0.2 -5,-0.1 -0.699 55.6-112.8 -88.0 122.1 67.2 57.7 77.0 48 121 A F - 0 0 103 -44,-0.8 2,-2.1 -2,-0.6 3,-0.3 -0.328 35.7-116.0 -53.3 119.8 67.8 56.7 73.4 49 122 A P S S+ 0 0 36 0, 0.0 -1,-0.2 0, 0.0 -10,-0.1 -0.300 91.6 86.0 -61.5 65.4 64.4 57.4 71.6 50 123 A D + 0 0 98 -2,-2.1 3,-0.1 -12,-0.1 -2,-0.1 0.167 66.0 79.8-150.5 17.2 63.3 54.0 70.5 51 124 A W + 0 0 11 -3,-0.3 2,-2.1 1,-0.1 14,-0.2 0.686 65.8 88.0 -99.5 -26.9 61.5 52.6 73.5 52 125 A Q + 0 0 2 12,-0.1 2,-0.3 11,-0.1 -1,-0.1 -0.234 57.0 140.5 -75.7 55.2 58.1 54.4 73.2 53 126 A N - 0 0 82 -2,-2.1 11,-3.1 -3,-0.1 12,-0.5 -0.733 32.6-161.3 -99.2 144.3 56.4 51.8 71.0 54 127 A Y B -E 63 0C 30 -2,-0.3 7,-0.1 9,-0.3 3,-0.1 -0.686 32.6 -86.1-114.5 166.9 52.8 50.7 71.4 55 128 A T - 0 0 6 7,-1.5 2,-0.1 -2,-0.2 -1,-0.1 -0.332 50.5 -99.5 -69.3 158.2 51.0 47.6 70.2 56 129 A P - 0 0 57 0, 0.0 6,-0.2 0, 0.0 -1,-0.1 -0.527 60.9-121.6 -74.7 150.5 49.5 47.7 66.7 57 130 A G + 0 0 37 -2,-0.1 2,-0.2 2,-0.1 3,-0.1 0.049 70.0 135.0 -80.6-163.4 45.8 48.4 66.5 58 131 A P S S+ 0 0 114 0, 0.0 2,-0.4 0, 0.0 0, 0.0 0.481 101.3 0.7 -72.4 172.2 42.8 48.5 66.2 59 132 A G S S+ 0 0 32 -2,-0.2 2,-0.3 2,-0.1 -2,-0.1 -0.695 117.7 10.4 91.2-136.2 41.6 49.7 69.6 60 133 A V - 0 0 44 -2,-0.4 2,-0.8 13,-0.1 13,-0.2 -0.675 61.6-141.3 -90.1 140.2 43.9 50.5 72.5 61 134 A R B -C 72 0B 26 11,-2.5 11,-1.8 -2,-0.3 -4,-0.1 -0.885 17.4-161.9-104.1 102.1 47.6 50.7 72.1 62 135 A Y - 0 0 52 -2,-0.8 -7,-1.5 9,-0.2 9,-0.1 -0.660 27.7-105.2 -82.9 133.8 49.3 49.2 75.1 63 136 A P B -E 54 0C 7 0, 0.0 29,-0.4 0, 0.0 -9,-0.3 -0.365 14.5-145.8 -64.2 140.1 53.0 50.2 75.6 64 137 A L S S+ 0 0 28 -11,-3.1 2,-0.6 -13,-0.2 -10,-0.1 0.656 83.5 78.5 -74.9 -21.6 55.7 47.5 74.7 65 138 A T S > S- 0 0 29 -12,-0.5 3,-1.0 -14,-0.2 2,-0.3 -0.851 82.0-136.6 -93.7 115.2 57.9 48.8 77.6 66 139 A F T 3 S+ 0 0 60 -2,-0.6 -55,-0.2 1,-0.2 21,-0.1 -0.574 92.0 36.3 -71.9 133.1 56.8 47.5 80.9 67 140 A G T 3 S+ 0 0 0 19,-0.9 2,-0.6 1,-0.4 -1,-0.2 -0.222 87.1 107.4 116.7 -42.8 56.9 50.3 83.5 68 141 A W < - 0 0 3 -3,-1.0 2,-0.7 1,-0.1 -1,-0.4 -0.639 56.9-163.3 -69.9 114.3 55.8 52.9 80.9 69 142 A C + 0 0 0 -2,-0.6 14,-1.0 -58,-0.5 2,-0.3 -0.618 49.6 93.9-106.3 70.6 52.3 53.6 82.1 70 143 A Y E - D 0 82B 0 -2,-0.7 12,-0.3 12,-0.2 2,-0.2 -0.918 45.7-175.0-157.3 123.9 50.5 55.4 79.2 71 144 A K E - D 0 81B 40 10,-3.0 10,-1.7 -2,-0.3 2,-0.6 -0.642 28.4-116.3-111.8 175.9 48.4 53.7 76.6 72 145 A L E -CD 61 80B 5 -11,-1.8 -11,-2.5 -2,-0.2 8,-0.2 -0.972 36.0-174.0-118.9 114.0 46.8 55.3 73.6 73 146 A V E D 0 79B 30 6,-1.4 6,-2.2 -2,-0.6 -13,-0.1 -0.755 360.0 360.0-110.5 152.8 43.0 55.1 73.6 74 147 A P 0 0 88 0, 0.0 -1,-0.2 0, 0.0 -14,-0.0 0.882 360.0 360.0 -84.5 360.0 40.4 56.1 71.0 75 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 76 179 A E 0 0 160 0, 0.0 2,-0.5 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 87.4 42.1 56.4 64.2 77 180 A V - 0 0 100 -49,-0.0 2,-0.3 -47,-0.0 -47,-0.1 -0.615 360.0-173.2 -77.9 126.8 42.4 59.4 66.6 78 181 A L E -B 29 0B 15 -49,-0.5 -49,-4.8 -2,-0.5 2,-0.3 -0.818 14.1-150.1-121.7 156.9 44.2 58.5 69.8 79 182 A E E -BD 28 73B 60 -6,-2.2 2,-1.6 -51,-0.3 -6,-1.4 -0.866 30.0-109.6-123.9 155.0 45.0 60.2 73.2 80 183 A W E - D 0 72B 1 -53,-1.5 -54,-2.1 -56,-0.4 2,-0.6 -0.662 46.9-178.8 -84.1 87.8 47.8 59.9 75.7 81 184 A R E - D 0 71B 99 -10,-1.7 -10,-3.0 -2,-1.6 -56,-0.1 -0.838 16.7-144.9 -98.2 115.8 45.9 58.1 78.5 82 185 A F E + D 0 70B 30 -2,-0.6 -12,-0.2 -12,-0.3 2,-0.2 -0.240 22.7 170.6 -66.4 165.0 47.7 57.3 81.7 83 186 A D > - 0 0 45 -14,-1.0 3,-0.9 1,-0.0 -2,-0.0 -0.583 22.2-159.3 179.6 111.3 46.8 54.1 83.6 84 187 A S G > S+ 0 0 64 1,-0.2 3,-1.3 -2,-0.2 4,-0.1 0.475 84.8 77.7 -83.2 -4.4 48.8 52.7 86.5 85 188 A R G 3> S+ 0 0 193 1,-0.2 4,-2.1 2,-0.2 3,-0.4 0.492 88.6 70.6 -76.1 1.2 47.6 49.1 86.4 86 189 A L G <4 S+ 0 0 7 -3,-0.9 -19,-0.9 2,-0.2 -1,-0.2 0.559 83.4 64.0 -86.8 -20.7 50.2 49.2 83.6 87 190 A A T <4 S+ 0 0 6 -3,-1.3 -1,-0.2 -21,-0.1 -2,-0.2 0.450 120.4 23.8 -79.6 -7.8 53.0 49.5 86.0 88 191 A F T 4 S+ 0 0 158 -3,-0.4 2,-0.7 1,-0.2 -2,-0.2 0.577 115.1 65.7-127.6 -33.6 52.1 46.0 87.2 89 192 A H < - 0 0 77 -4,-2.1 2,-2.1 -5,-0.1 3,-0.2 -0.873 63.6-155.5-100.4 114.5 50.3 44.4 84.3 90 193 A H >> + 0 0 24 -2,-0.7 4,-1.5 1,-0.2 3,-0.7 -0.532 28.7 166.4 -84.7 75.7 52.4 43.9 81.2 91 194 A V H >> + 0 0 23 -2,-2.1 3,-1.8 1,-0.2 4,-1.7 0.963 65.8 57.5 -54.7 -63.6 49.3 43.9 79.0 92 195 A A H 3> S+ 0 0 1 -29,-0.4 4,-2.0 1,-0.3 -1,-0.2 0.708 108.3 48.2 -41.6 -34.4 51.1 44.2 75.7 93 196 A R H <4 S+ 0 0 130 -3,-0.7 -1,-0.3 2,-0.2 -2,-0.2 0.828 107.8 55.6 -77.7 -31.6 53.0 41.0 76.4 94 197 A E H << S+ 0 0 125 -3,-1.8 -2,-0.2 -4,-1.5 -3,-0.1 0.965 118.9 32.2 -61.6 -48.9 49.8 39.3 77.4 95 198 A L H < S+ 0 0 90 -4,-1.7 -2,-0.2 1,-0.2 3,-0.2 0.929 129.2 33.2 -72.2 -55.4 48.2 40.1 74.0 96 199 A H >< + 0 0 44 -4,-2.0 3,-0.6 -5,-0.2 4,-0.3 -0.702 60.6 161.9-107.8 78.5 51.1 40.1 71.7 97 200 A P G > S+ 0 0 69 0, 0.0 3,-1.1 0, 0.0 -1,-0.2 0.763 71.3 71.8 -66.4 -20.4 53.6 37.4 73.0 98 201 A E G 3 S+ 0 0 147 1,-0.3 -5,-0.1 -3,-0.2 -2,-0.1 0.895 89.9 58.9 -58.5 -44.6 55.2 37.4 69.5 99 202 A Y G < 0 0 114 -3,-0.6 -1,-0.3 -7,-0.2 -6,-0.1 0.639 360.0 360.0 -62.3 -17.0 56.7 40.9 70.2 100 203 A F < 0 0 104 -3,-1.1 -1,-0.1 -4,-0.3 -36,-0.0 -0.910 360.0 360.0-113.9 360.0 58.6 39.6 73.2