==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER ELECTRON TRANSPORT 04-NOV-97 1AYG . COMPND 2 MOLECULE: CYTOCHROME C-552; . SOURCE 2 ORGANISM_SCIENTIFIC: HYDROGENOBACTER THERMOPHILUS; . AUTHOR J.HASEGAWA,T.YOSHIDA,T.YAMAZAKI,Y.SAMBONGI,Y.YU,Y.IGARASHI, . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5568.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 43 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 25 31.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A N 0 0 128 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -87.1 63.2 -10.9 6.3 2 2 A E > + 0 0 139 0, 0.0 3,-1.3 0, 0.0 4,-0.3 0.342 360.0 64.3-157.1 -41.8 62.1 -8.4 9.0 3 3 A Q T 3> S+ 0 0 123 1,-0.3 4,-1.3 2,-0.2 3,-0.4 0.695 98.7 62.4 -68.8 -14.2 64.5 -8.4 11.9 4 4 A L T 34 S+ 0 0 59 1,-0.2 4,-0.3 2,-0.2 -1,-0.3 0.690 101.6 50.1 -84.0 -16.5 67.1 -7.0 9.4 5 5 A A T <4 S+ 0 0 0 -3,-1.3 6,-1.9 3,-0.1 5,-0.3 0.391 114.9 44.1 -99.7 3.5 65.0 -3.9 8.9 6 6 A K T 4 S+ 0 0 133 -3,-0.4 -2,-0.2 -4,-0.3 -3,-0.1 0.782 107.6 48.5-110.4 -60.5 64.6 -3.2 12.6 7 7 A Q S < S+ 0 0 111 -4,-1.3 -3,-0.1 1,-0.2 -2,-0.1 0.871 118.5 46.3 -51.5 -34.6 68.0 -3.7 14.4 8 8 A K S S- 0 0 106 -4,-0.3 -1,-0.2 -5,-0.3 -3,-0.1 0.973 110.5-122.3 -74.1 -54.2 69.5 -1.5 11.6 9 9 A G S S+ 0 0 37 -5,-0.1 4,-0.3 -4,-0.1 3,-0.2 0.614 70.1 127.9 118.9 24.7 66.8 1.3 11.7 10 10 A C S > S+ 0 0 29 -5,-0.3 3,-1.0 1,-0.2 -4,-0.1 0.833 71.2 59.5 -79.7 -31.0 65.5 1.3 8.1 11 11 A M G > S+ 0 0 39 -6,-1.9 3,-1.6 1,-0.2 -1,-0.2 0.709 82.5 86.1 -70.2 -15.7 61.9 1.0 9.2 12 12 A A G 3 S+ 0 0 77 1,-0.3 -1,-0.2 -7,-0.2 9,-0.2 0.912 111.5 15.4 -51.5 -41.0 62.4 4.2 11.1 13 13 A C G < S+ 0 0 53 -3,-1.0 9,-0.5 -4,-0.3 -1,-0.3 -0.062 129.5 55.4-123.3 33.0 61.5 6.0 7.8 14 14 A H < + 0 0 37 -3,-1.6 2,-0.2 7,-0.1 10,-0.2 -0.863 49.0 164.9-148.8-176.4 59.9 3.1 5.9 15 15 A D - 0 0 53 8,-0.3 10,-0.6 -2,-0.3 11,-0.4 -0.751 46.5-101.0 163.6 148.7 57.2 0.5 6.1 16 16 A L S S- 0 0 78 8,-0.2 10,-0.7 1,-0.2 11,-0.5 0.973 113.5 -12.1 -50.4 -75.7 55.4 -2.0 3.8 17 17 A K S S+ 0 0 159 9,-0.1 2,-0.4 1,-0.1 -1,-0.2 -0.177 110.0 106.0-120.6 40.9 52.2 0.0 3.4 18 18 A A - 0 0 32 -3,-0.2 -1,-0.1 5,-0.0 2,-0.1 -0.539 56.7-159.0-118.4 67.6 52.7 2.7 6.2 19 19 A K + 0 0 153 -2,-0.4 -5,-0.1 1,-0.1 -3,-0.1 -0.216 40.5 131.5 -47.1 110.7 53.6 5.8 4.2 20 20 A K S S- 0 0 166 2,-0.8 -1,-0.1 -7,-0.1 -7,-0.1 0.332 73.9 -28.0-129.0 -95.7 55.4 7.9 6.9 21 21 A V S S+ 0 0 99 -9,-0.2 -8,-0.1 -7,-0.1 -7,-0.1 0.881 123.7 30.9 -94.3 -72.8 58.8 9.6 6.3 22 22 A G S S- 0 0 14 -9,-0.5 -2,-0.8 1,-0.1 2,-0.5 -0.122 107.3 -71.8 -75.8-178.1 60.6 7.6 3.6 23 23 A P - 0 0 15 0, 0.0 -8,-0.3 0, 0.0 5,-0.1 -0.642 55.3-110.3 -78.9 119.7 58.9 5.6 0.8 24 24 A A > - 0 0 0 -2,-0.5 4,-2.0 -10,-0.2 -8,-0.2 -0.151 27.9-116.9 -47.4 141.1 57.2 2.5 2.1 25 25 A Y H > S+ 0 0 8 -10,-0.6 4,-2.1 1,-0.2 5,-0.3 0.937 114.9 58.6 -49.2 -49.3 59.1 -0.6 0.9 26 26 A A H > S+ 0 0 9 -10,-0.7 4,-1.8 -11,-0.4 -1,-0.2 0.944 107.2 46.0 -46.9 -54.1 56.0 -1.7 -1.1 27 27 A D H > S+ 0 0 63 -11,-0.5 4,-1.6 1,-0.2 -1,-0.3 0.877 107.0 60.3 -59.8 -35.1 56.0 1.6 -3.1 28 28 A V H X S+ 0 0 11 -4,-2.0 4,-0.6 -3,-0.2 3,-0.3 0.947 104.8 47.5 -59.7 -46.5 59.8 1.2 -3.6 29 29 A A H >< S+ 0 0 11 -4,-2.1 3,-1.2 47,-0.3 -1,-0.2 0.902 108.7 54.7 -63.5 -38.0 59.4 -2.1 -5.4 30 30 A K H 3< S+ 0 0 169 -4,-1.8 -1,-0.2 -5,-0.3 -2,-0.2 0.839 99.4 62.3 -65.7 -28.6 56.6 -0.6 -7.6 31 31 A K H 3< S+ 0 0 104 -4,-1.6 2,-0.3 -3,-0.3 -1,-0.3 0.721 115.0 32.4 -69.9 -16.8 59.0 2.1 -8.6 32 32 A Y << + 0 0 35 -3,-1.2 2,-0.1 -4,-0.6 6,-0.0 -0.894 62.3 148.4-133.9 165.4 61.2 -0.6 -10.2 33 33 A A S S+ 0 0 89 -2,-0.3 3,-0.1 0, 0.0 -3,-0.0 -0.344 72.3 10.7 163.6 109.9 60.6 -3.9 -11.9 34 34 A G S S+ 0 0 88 1,-0.3 -2,-0.0 -2,-0.1 4,-0.0 0.292 83.4 145.0 93.5 -11.8 62.5 -5.7 -14.7 35 35 A R > - 0 0 128 1,-0.1 3,-0.6 2,-0.1 -1,-0.3 -0.261 51.5-139.7 -58.6 145.9 65.4 -3.2 -14.4 36 36 A K T 3 S+ 0 0 165 1,-0.2 -1,-0.1 -3,-0.1 3,-0.1 0.491 101.1 37.6 -87.3 -1.2 68.8 -4.9 -15.0 37 37 A D T 3> S+ 0 0 71 2,-0.1 4,-1.7 3,-0.1 5,-0.3 -0.094 72.3 121.1-139.0 38.6 70.3 -2.8 -12.2 38 38 A A H <> S+ 0 0 10 -3,-0.6 4,-1.4 3,-0.2 5,-0.3 0.792 81.4 47.1 -74.6 -24.7 67.6 -2.7 -9.5 39 39 A V H > S+ 0 0 36 2,-0.2 4,-1.8 3,-0.2 5,-0.5 0.966 118.1 36.5 -80.6 -58.5 69.9 -4.3 -7.0 40 40 A D H > S+ 0 0 98 1,-0.2 4,-1.0 3,-0.2 -2,-0.2 0.907 121.2 50.5 -61.5 -37.8 73.1 -2.2 -7.5 41 41 A Y H X S+ 0 0 80 -4,-1.7 4,-1.8 2,-0.2 5,-0.2 0.991 117.2 37.1 -64.4 -58.7 70.9 0.9 -8.0 42 42 A L H >X S+ 0 0 16 -4,-1.4 4,-1.4 -5,-0.3 3,-0.8 0.993 118.7 46.6 -56.8 -70.9 68.8 0.4 -4.9 43 43 A A H 3X S+ 0 0 3 -4,-1.8 4,-2.2 -5,-0.3 -1,-0.2 0.811 107.4 65.4 -43.1 -26.9 71.6 -0.9 -2.6 44 44 A G H 3X S+ 0 0 18 -4,-1.0 4,-0.7 -5,-0.5 5,-0.5 0.986 105.1 38.4 -62.9 -55.7 73.5 2.1 -4.1 45 45 A K H << S+ 0 0 99 -4,-1.8 -1,-0.2 -3,-0.8 -2,-0.2 0.609 113.9 62.7 -70.4 -6.9 71.2 4.7 -2.5 46 46 A I H < S+ 0 0 33 -4,-1.4 16,-0.6 -5,-0.2 -2,-0.2 0.894 107.6 36.4 -84.9 -43.0 71.2 2.4 0.5 47 47 A K H < S+ 0 0 52 -4,-2.2 -2,-0.2 -3,-0.3 -1,-0.2 0.467 137.7 21.4 -88.5 0.7 74.9 2.5 1.4 48 48 A K S < S- 0 0 156 -4,-0.7 2,-0.3 -5,-0.2 -3,-0.2 0.589 88.2-154.5-129.8 -60.0 75.1 6.2 0.4 49 49 A G + 0 0 10 -5,-0.5 2,-0.3 12,-0.1 -2,-0.1 -0.836 22.5 157.7 113.7-153.1 71.7 8.0 0.4 50 50 A G B -A 59 0A 37 9,-1.7 9,-2.2 -2,-0.3 2,-0.3 -0.876 25.5-131.0 125.9-160.2 70.6 11.0 -1.6 51 51 A S + 0 0 63 -2,-0.3 5,-0.1 7,-0.2 6,-0.0 -0.969 57.6 102.1 179.5 167.7 67.2 12.4 -2.7 52 52 A G S S+ 0 0 59 3,-0.4 4,-0.1 -2,-0.3 -1,-0.0 0.216 78.2 75.8 124.5 -12.9 65.1 13.7 -5.6 53 53 A V S S+ 0 0 78 1,-0.1 3,-0.1 3,-0.0 -2,-0.0 0.671 109.1 25.7-100.6 -21.1 63.1 10.5 -6.4 54 54 A W S S- 0 0 100 1,-0.3 2,-0.3 3,-0.2 3,-0.2 0.279 129.6 -72.3-123.1 8.3 60.6 10.9 -3.4 55 55 A G - 0 0 40 1,-0.1 -3,-0.4 2,-0.0 -1,-0.3 -0.979 69.8 -53.5 136.9-150.5 60.8 14.7 -2.9 56 56 A S S S+ 0 0 110 -2,-0.3 -1,-0.1 -5,-0.1 -3,-0.0 0.566 88.1 120.9-104.1 -11.6 63.5 17.0 -1.5 57 57 A V - 0 0 108 -3,-0.2 2,-0.8 1,-0.1 -5,-0.3 -0.377 62.1-139.2 -57.2 111.4 64.0 15.2 1.8 58 58 A P - 0 0 103 0, 0.0 -7,-0.2 0, 0.0 -1,-0.1 -0.633 14.6-143.9 -77.6 105.8 67.7 14.3 1.7 59 59 A M B -A 50 0A 74 -9,-2.2 -9,-1.7 -2,-0.8 0, 0.0 -0.471 17.8-121.4 -71.7 142.5 68.0 10.8 3.1 60 60 A P - 0 0 77 0, 0.0 -12,-0.1 0, 0.0 2,-0.1 -0.331 28.8 -95.9 -80.0 164.2 71.2 10.1 5.2 61 61 A P - 0 0 90 0, 0.0 2,-0.3 0, 0.0 -12,-0.1 -0.405 36.5-146.3 -77.9 153.9 73.8 7.5 4.4 62 62 A Q - 0 0 70 -16,-0.6 2,-0.9 -2,-0.1 -54,-0.0 -0.850 14.7-125.8-121.5 159.6 73.7 4.1 6.1 63 63 A N + 0 0 160 -2,-0.3 2,-0.3 -55,-0.1 -16,-0.1 -0.642 58.1 132.8-104.1 78.1 76.5 1.7 7.2 64 64 A V - 0 0 22 -2,-0.9 2,-0.1 -18,-0.1 -2,-0.1 -0.922 53.5-117.4-125.9 153.0 75.6 -1.6 5.5 65 65 A T > - 0 0 96 -2,-0.3 4,-2.2 1,-0.1 5,-0.2 -0.393 31.3-110.0 -82.0 164.9 77.6 -4.1 3.5 66 66 A D H > S+ 0 0 89 2,-0.2 4,-1.3 1,-0.2 -1,-0.1 0.723 117.2 58.3 -68.9 -15.9 76.9 -4.7 -0.2 67 67 A A H > S+ 0 0 72 2,-0.2 4,-1.6 3,-0.1 5,-0.2 0.978 111.1 35.3 -77.3 -60.0 75.7 -8.2 0.9 68 68 A E H > S+ 0 0 24 1,-0.2 4,-1.3 2,-0.2 -2,-0.2 0.887 117.9 55.8 -62.1 -34.1 72.9 -7.2 3.4 69 69 A A H X S+ 0 0 0 -4,-2.2 4,-1.6 1,-0.2 3,-0.3 0.917 104.6 52.2 -65.1 -39.0 72.2 -4.2 1.1 70 70 A K H X S+ 0 0 97 -4,-1.3 4,-2.1 1,-0.2 5,-0.2 0.865 108.3 51.7 -65.3 -32.1 71.6 -6.6 -1.8 71 71 A Q H X S+ 0 0 52 -4,-1.6 4,-1.6 1,-0.2 -1,-0.2 0.763 106.3 54.6 -76.0 -22.4 69.2 -8.6 0.3 72 72 A L H X S+ 0 0 4 -4,-1.3 4,-1.6 -3,-0.3 -2,-0.2 0.823 112.5 42.0 -80.6 -29.0 67.3 -5.4 1.1 73 73 A A H X S+ 0 0 0 -4,-1.6 4,-1.5 2,-0.2 -2,-0.2 0.877 119.0 44.0 -83.7 -37.7 66.8 -4.5 -2.5 74 74 A Q H X S+ 0 0 118 -4,-2.1 4,-1.8 -5,-0.2 -2,-0.2 0.884 119.9 43.0 -73.4 -35.8 66.0 -8.1 -3.5 75 75 A W H X S+ 0 0 44 -4,-1.6 4,-1.1 -5,-0.2 -2,-0.2 0.922 111.6 53.0 -75.9 -43.4 63.7 -8.5 -0.5 76 76 A I H < S+ 0 0 10 -4,-1.6 -47,-0.3 -5,-0.2 -2,-0.2 0.893 111.4 48.1 -60.1 -36.0 62.0 -5.1 -0.8 77 77 A L H < S+ 0 0 50 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.955 103.6 58.2 -70.7 -46.7 61.2 -6.0 -4.5 78 78 A S H < S+ 0 0 110 -4,-1.8 2,-0.4 -5,-0.2 -1,-0.2 0.796 94.1 86.5 -53.4 -22.6 59.8 -9.4 -3.6 79 79 A I < 0 0 28 -4,-1.1 -50,-0.1 -3,-0.2 -4,-0.0 -0.650 360.0 360.0 -81.6 129.7 57.4 -7.3 -1.4 80 80 A K 0 0 181 -2,-0.4 -54,-0.2 -51,-0.1 -53,-0.1 -0.457 360.0 360.0 -71.8 360.0 54.3 -6.1 -3.3