==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSLATION 07-SEP-05 2AYJ . COMPND 2 MOLECULE: 50S RIBOSOMAL PROTEIN L40E; . SOURCE 2 ORGANISM_SCIENTIFIC: SULFOLOBUS SOLFATARICUS; . AUTHOR B.WU,A.YEE,J.LUKIN,A.LEMAK,A.SEMESI,T.RAMELOT,M.KENNEDY, . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5188.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 20 35.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 7 12.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 178 0, 0.0 4,-0.0 0, 0.0 11,-0.0 0.000 360.0 360.0 360.0 159.9 1.8 -10.6 -4.5 2 2 A P + 0 0 132 0, 0.0 2,-1.4 0, 0.0 0, 0.0 0.803 360.0 69.4 -42.7 -38.0 4.2 -12.4 -7.0 3 3 A L S S- 0 0 149 1,-0.0 2,-1.3 2,-0.0 0, 0.0 -0.731 78.5-172.7 -82.3 89.6 6.9 -11.7 -4.4 4 4 A T + 0 0 125 -2,-1.4 -1,-0.0 3,-0.0 3,-0.0 -0.693 6.6 176.9 -95.5 85.8 5.5 -14.1 -1.8 5 5 A D - 0 0 50 -2,-1.3 3,-0.1 1,-0.1 -2,-0.0 -0.334 41.3-111.5 -74.4 165.7 7.5 -13.6 1.4 6 6 A P S S- 0 0 136 0, 0.0 2,-0.1 0, 0.0 -1,-0.1 0.985 86.7 -40.7 -62.0 -58.0 6.7 -15.5 4.6 7 7 A A - 0 0 40 6,-0.0 -3,-0.0 -3,-0.0 4,-0.0 -0.499 62.1-169.1-176.7 97.8 5.5 -12.4 6.4 8 8 A K - 0 0 121 -2,-0.1 5,-0.3 -3,-0.1 0, 0.0 -0.189 48.1 -91.4 -76.2-179.8 7.1 -8.9 6.3 9 9 A L S S+ 0 0 147 3,-0.1 2,-0.2 2,-0.1 -1,-0.1 0.018 101.3 92.2 -82.4 29.8 6.2 -6.0 8.7 10 10 A Q S > S- 0 0 56 21,-0.1 3,-1.2 20,-0.0 9,-0.0 -0.554 100.7 -83.1-116.8-175.9 3.7 -5.0 6.0 11 11 A I T 3> S+ 0 0 29 1,-0.3 4,-0.9 -2,-0.2 3,-0.1 0.418 99.5 100.4 -72.6 4.0 -0.0 -5.7 5.3 12 12 A V T 34 + 0 0 62 1,-0.2 2,-1.8 2,-0.2 -1,-0.3 0.838 67.6 70.6 -59.2 -35.2 0.9 -8.9 3.5 13 13 A Q T <4 S- 0 0 119 -3,-1.2 -1,-0.2 -5,-0.3 -6,-0.0 -0.536 131.9 -57.4 -88.3 71.5 -0.1 -10.9 6.6 14 14 A Q T 4 S+ 0 0 162 -2,-1.8 2,-0.4 1,-0.2 -1,-0.2 0.979 83.2 152.6 57.6 78.0 -3.8 -10.4 6.4 15 15 A R < - 0 0 103 -4,-0.9 -1,-0.2 -3,-0.1 -4,-0.0 -0.997 40.2-153.8-132.6 141.9 -4.5 -6.7 6.4 16 16 A V S S+ 0 0 89 -2,-0.4 2,-0.5 2,-0.1 -1,-0.1 0.671 75.9 92.2 -84.6 -19.1 -7.5 -4.9 4.9 17 17 A F - 0 0 121 1,-0.1 14,-0.1 -6,-0.0 31,-0.1 -0.664 69.1-152.3 -78.9 123.3 -5.4 -1.7 4.5 18 18 A L - 0 0 58 -2,-0.5 2,-0.1 29,-0.4 31,-0.1 -0.155 22.5 -85.0 -86.4-178.0 -3.7 -1.6 1.1 19 19 A K - 0 0 35 27,-0.1 28,-2.9 11,-0.1 2,-0.5 -0.391 39.8-109.6 -86.1 167.9 -0.5 0.1 0.0 20 20 A K E -AB 29 46A 39 9,-1.6 9,-3.1 26,-0.3 2,-0.5 -0.860 24.0-154.9-103.5 131.2 -0.1 3.7 -1.1 21 21 A V E -AB 28 45A 17 24,-3.2 24,-2.1 -2,-0.5 7,-0.3 -0.895 23.2-116.5-108.2 126.8 0.7 4.6 -4.6 22 22 A C E > - B 0 44A 1 5,-2.7 4,-0.7 -2,-0.5 22,-0.3 -0.390 12.1-147.1 -56.6 131.7 2.5 7.8 -5.5 23 23 A R T 4 S+ 0 0 142 20,-2.2 -1,-0.1 2,-0.1 21,-0.1 0.381 97.2 49.1 -84.4 4.9 0.3 10.2 -7.5 24 24 A K T 4 S+ 0 0 137 19,-0.5 -1,-0.1 3,-0.1 20,-0.1 0.808 130.6 8.5-102.4 -58.8 3.5 11.4 -9.2 25 25 A C T 4 S- 0 0 70 2,-0.1 -2,-0.1 0, 0.0 3,-0.1 0.804 92.1-118.6 -92.5 -33.3 5.3 8.2 -10.3 26 26 A G < + 0 0 37 -4,-0.7 2,-0.6 1,-0.3 -3,-0.1 0.633 58.8 159.0 88.4 21.4 2.8 5.6 -9.6 27 27 A A - 0 0 13 -6,-0.1 -5,-2.7 1,-0.0 2,-0.6 -0.725 34.6-144.3 -83.9 117.7 5.3 4.2 -7.1 28 28 A L E -A 21 0A 96 -2,-0.6 -7,-0.3 -7,-0.3 18,-0.0 -0.744 20.7-170.6 -88.0 117.9 3.6 2.0 -4.6 29 29 A N E -A 20 0A 2 -9,-3.1 -9,-1.6 -2,-0.6 7,-0.1 -0.695 29.6 -92.0-106.9 157.6 5.2 2.3 -1.2 30 30 A P > - 0 0 27 0, 0.0 3,-1.2 0, 0.0 -1,-0.1 -0.282 34.8-114.0 -63.2 154.5 4.7 0.2 2.0 31 31 A I T 3 S+ 0 0 45 1,-0.3 -21,-0.1 -14,-0.1 -13,-0.0 0.717 120.5 58.4 -60.8 -18.9 2.1 1.5 4.5 32 32 A R T 3 S+ 0 0 175 -23,-0.0 -1,-0.3 2,-0.0 2,-0.1 0.738 85.5 97.1 -81.3 -26.1 5.2 2.0 6.7 33 33 A A < - 0 0 24 -3,-1.2 3,-0.1 1,-0.1 -4,-0.1 -0.397 63.2-153.1 -69.3 141.6 6.9 4.3 4.3 34 34 A T S S- 0 0 124 1,-0.2 2,-0.3 -2,-0.1 10,-0.2 0.791 72.4 -5.0 -85.7 -29.3 6.4 8.0 5.0 35 35 A K S S- 0 0 83 8,-0.1 -1,-0.2 7,-0.0 2,-0.1 -0.909 95.2 -51.9-153.3 179.1 6.9 9.1 1.4 36 36 A C > - 0 0 0 -2,-0.3 4,-0.9 1,-0.1 6,-0.2 -0.323 31.6-150.2 -60.4 132.2 7.6 8.0 -2.2 37 37 A R T 4 S+ 0 0 166 2,-0.1 -1,-0.1 1,-0.1 -9,-0.1 0.138 97.4 49.7 -89.4 18.4 10.8 6.0 -2.6 38 38 A R T 4 S+ 0 0 166 -11,-0.1 -1,-0.1 0, 0.0 -2,-0.0 0.673 133.0 2.1-113.9 -53.8 11.0 7.5 -6.1 39 39 A C T 4 S- 0 0 53 -12,-0.1 -2,-0.1 4,-0.1 -3,-0.0 0.497 79.4-138.4-118.6 -8.3 10.6 11.2 -5.7 40 40 A H < + 0 0 112 -4,-0.9 -3,-0.1 1,-0.1 -6,-0.0 0.835 58.5 137.1 56.1 37.4 10.3 11.6 -1.9 41 41 A S - 0 0 45 2,-0.1 -1,-0.1 1,-0.0 3,-0.1 0.302 67.3-126.2-102.0 7.3 7.5 14.1 -2.5 42 42 A T + 0 0 97 1,-0.2 2,-0.9 -6,-0.2 -7,-0.0 0.702 69.3 133.8 52.9 24.0 5.2 12.7 0.2 43 43 A N + 0 0 44 2,-0.0 -20,-2.2 -7,-0.0 -19,-0.5 -0.646 24.8 135.6-106.1 73.3 2.5 12.4 -2.5 44 44 A L E -B 22 0A 20 -2,-0.9 2,-0.4 -22,-0.3 -22,-0.3 -0.899 37.0-158.2-118.7 151.0 1.1 9.0 -2.0 45 45 A R E -B 21 0A 135 -24,-2.1 -24,-3.2 -2,-0.3 2,-0.2 -0.996 21.0-127.6-129.1 125.6 -2.5 7.8 -2.0 46 46 A L E -B 20 0A 71 -2,-0.4 -26,-0.3 -26,-0.3 3,-0.2 -0.553 37.9-103.1 -73.3 134.9 -3.5 4.6 -0.2 47 47 A K - 0 0 105 -28,-2.9 -29,-0.4 -2,-0.2 2,-0.1 -0.083 54.6 -68.7 -56.1 156.1 -5.5 2.3 -2.5 48 48 A K - 0 0 161 1,-0.2 -1,-0.2 -31,-0.1 3,-0.0 -0.261 39.6-161.6 -50.0 112.2 -9.2 2.0 -2.2 49 49 A K - 0 0 98 -3,-0.2 -1,-0.2 -2,-0.1 -2,-0.1 0.839 32.4-168.0 -63.4 -32.6 -9.9 0.3 1.1 50 50 A E - 0 0 127 -3,-0.0 -1,-0.1 2,-0.0 -34,-0.0 -0.006 18.1 -85.8 67.6-179.1 -13.4 -0.4 -0.3 51 51 A L - 0 0 104 1,-0.2 4,-0.1 2,-0.1 -3,-0.0 -0.911 17.5-132.4-124.1 154.7 -16.3 -1.7 1.8 52 52 A P S S- 0 0 114 0, 0.0 -1,-0.2 0, 0.0 3,-0.1 0.996 80.4 -53.4 -65.2 -66.0 -17.4 -5.2 2.7 53 53 A T S S+ 0 0 141 1,-0.6 2,-0.2 2,-0.0 -2,-0.1 0.426 118.7 14.6-141.9 -51.8 -21.1 -4.9 1.8 54 54 A K S S- 0 0 166 1,-0.1 -1,-0.6 0, 0.0 2,-0.1 -0.562 93.0 -73.6-118.6-175.2 -22.5 -1.9 3.6 55 55 A K 0 0 176 -2,-0.2 -1,-0.1 1,-0.1 -4,-0.0 -0.445 360.0 360.0 -80.9 157.3 -21.1 1.2 5.3 56 56 A G 0 0 143 -2,-0.1 -1,-0.1 -4,-0.0 -5,-0.0 -0.558 360.0 360.0 153.7 360.0 -19.5 0.9 8.7