==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 19-NOV-97 1AZP . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*GP*AP*TP*CP*GP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.ROBINSON,Y.-G.GAO,B.S.MCCRARY,S.P.EDMONDSON,J.W.SHRIVER, . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5060.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 66.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 34.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 189 0, 0.0 2,-0.5 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0 111.1 8.0 5.8 29.8 2 2 A V - 0 0 47 49,-0.0 15,-2.5 2,-0.0 2,-0.5 -0.979 360.0-167.1-117.3 118.1 10.0 6.9 26.7 3 3 A K E -A 16 0A 92 -2,-0.5 2,-0.6 13,-0.2 13,-0.3 -0.939 10.7-149.0-109.1 129.3 9.5 10.5 25.5 4 4 A V E -A 15 0A 2 11,-4.0 11,-3.2 -2,-0.5 2,-0.4 -0.874 14.1-159.7 -96.2 122.4 10.8 11.6 22.1 5 5 A K E +A 14 0A 121 -2,-0.6 2,-0.3 9,-0.3 9,-0.3 -0.888 24.0 151.0-104.0 135.7 11.8 15.3 22.2 6 6 A F E -A 13 0A 10 7,-2.1 7,-2.4 -2,-0.4 2,-0.4 -0.970 41.8-113.3-154.9 166.7 12.0 17.1 18.9 7 7 A K E +A 12 0A 147 37,-0.4 2,-0.3 -2,-0.3 37,-0.3 -0.904 31.9 172.6-108.2 134.4 11.6 20.5 17.2 8 8 A Y E > S-A 11 0A 80 3,-2.9 3,-1.6 -2,-0.4 -2,-0.0 -0.950 71.9 -7.2-145.7 123.5 8.8 21.2 14.7 9 9 A K T 3 S- 0 0 179 -2,-0.3 2,-0.2 1,-0.3 3,-0.1 0.938 127.8 -61.6 58.8 43.4 7.9 24.5 13.2 10 10 A G T 3 S+ 0 0 73 1,-0.2 -1,-0.3 -3,-0.0 2,-0.2 0.165 113.5 124.5 71.8 -22.5 10.5 26.0 15.6 11 11 A E E < -A 8 0A 114 -3,-1.6 -3,-2.9 -2,-0.2 2,-0.2 -0.492 62.3-129.6 -72.1 132.9 8.3 24.7 18.5 12 12 A E E +A 7 0A 117 -5,-0.2 2,-0.3 -2,-0.2 -5,-0.2 -0.595 37.5 177.1 -79.8 145.5 10.0 22.4 21.0 13 13 A K E -A 6 0A 47 -7,-2.4 -7,-2.1 -2,-0.2 2,-0.3 -0.952 27.2-163.6-149.3 165.4 8.1 19.2 21.6 14 14 A E E -A 5 0A 93 -2,-0.3 2,-0.4 -9,-0.3 -9,-0.3 -0.938 12.5-174.6-151.6 124.8 8.1 15.9 23.4 15 15 A V E -A 4 0A 9 -11,-3.2 -11,-4.0 -2,-0.3 2,-0.4 -0.940 26.9-120.2-126.3 148.4 5.8 12.9 22.5 16 16 A D E > -A 3 0A 44 -2,-0.4 3,-3.0 -13,-0.3 4,-0.4 -0.727 24.5-126.9 -85.2 130.3 5.4 9.6 24.3 17 17 A T G > S+ 0 0 10 -15,-2.5 3,-1.5 -2,-0.4 -1,-0.1 0.791 108.7 64.6 -49.6 -31.3 6.3 6.6 22.1 18 18 A S G 3 S+ 0 0 91 -16,-0.3 -1,-0.3 1,-0.3 -15,-0.1 0.690 100.0 53.6 -67.2 -16.9 3.0 5.0 22.9 19 19 A K G < S+ 0 0 94 -3,-3.0 16,-2.8 15,-0.1 2,-0.3 0.498 86.6 106.9 -90.3 -10.6 1.4 8.0 21.1 20 20 A I E < +B 34 0B 13 -3,-1.5 14,-0.3 -4,-0.4 3,-0.1 -0.602 42.2 176.3 -76.4 129.8 3.5 7.4 17.9 21 21 A K E + 0 0 107 12,-2.3 2,-0.3 -2,-0.3 -1,-0.1 0.811 59.1 18.1 -96.9 -85.7 1.7 6.0 14.9 22 22 A K E - 0 0 142 39,-0.0 11,-2.1 2,-0.0 2,-0.4 -0.671 61.3-174.4 -95.1 148.0 3.8 5.6 11.7 23 23 A V E +B 32 0B 12 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.997 11.1 162.3-136.8 137.3 7.6 5.6 11.7 24 24 A W E -B 31 0B 95 7,-2.6 7,-2.8 -2,-0.4 2,-0.4 -0.967 32.1-114.8-151.0 162.8 9.8 5.6 8.6 25 25 A R E -B 30 0B 93 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.841 19.1-179.4-105.4 140.8 13.3 6.3 7.6 26 26 A V E > S-B 29 0B 71 3,-2.6 3,-2.2 -2,-0.4 2,-0.5 -0.833 71.5 -60.3-136.8 90.0 14.5 9.0 5.2 27 27 A G T 3 S- 0 0 62 -2,-0.4 -1,-0.0 1,-0.3 0, 0.0 -0.544 119.8 -18.6 72.9-119.2 18.2 8.6 4.9 28 28 A K T 3 S+ 0 0 169 -2,-0.5 19,-2.2 -3,-0.1 2,-0.4 0.325 119.4 104.0 -97.8 1.3 19.6 9.1 8.4 29 29 A M E < -BC 26 46B 82 -3,-2.2 -3,-2.6 17,-0.2 2,-0.6 -0.716 59.9-153.0 -88.6 132.9 16.3 10.9 9.4 30 30 A V E -BC 25 45B 0 15,-3.0 15,-2.6 -2,-0.4 2,-0.3 -0.954 22.8-175.0-107.0 114.9 13.7 9.0 11.5 31 31 A S E +BC 24 44B 18 -7,-2.8 -7,-2.6 -2,-0.6 2,-0.3 -0.799 7.9 161.1-111.1 153.9 10.3 10.5 10.7 32 32 A F E -BC 23 43B 0 11,-2.5 11,-2.1 -2,-0.3 2,-0.3 -0.989 31.1-130.8-163.5 167.5 6.9 9.7 12.3 33 33 A T E - C 0 42B 19 -11,-2.1 -12,-2.3 -2,-0.3 2,-0.3 -0.827 28.8-176.6-119.9 160.6 3.4 10.7 12.9 34 34 A Y E -BC 20 41B 10 7,-1.8 7,-3.0 -2,-0.3 2,-0.7 -0.980 36.9 -90.3-154.6 163.1 1.7 10.7 16.4 35 35 A D E - C 0 40B 50 -16,-2.8 2,-0.7 -2,-0.3 5,-0.2 -0.699 37.5-172.2 -77.5 114.2 -1.6 11.3 18.2 36 36 A D E > - C 0 39B 62 3,-3.4 3,-2.2 -2,-0.7 -1,-0.1 -0.748 63.9 -68.5-112.6 81.6 -1.5 15.0 19.1 37 37 A N T 3 S- 0 0 159 -2,-0.7 3,-0.1 1,-0.3 -1,-0.0 0.866 117.3 -21.9 33.8 61.8 -4.6 15.3 21.3 38 38 A G T 3 S+ 0 0 74 1,-0.3 -1,-0.3 0, 0.0 2,-0.2 0.097 127.9 72.7 105.5 -29.3 -7.0 14.7 18.4 39 39 A K E < S-C 36 0B 142 -3,-2.2 -3,-3.4 -5,-0.0 2,-0.7 -0.727 85.1-103.1-114.8 169.7 -5.0 15.7 15.4 40 40 A T E -C 35 0B 79 -2,-0.2 2,-0.2 -5,-0.2 -5,-0.2 -0.854 39.1-162.3 -96.8 115.3 -2.1 13.9 13.6 41 41 A G E -C 34 0B 8 -7,-3.0 -7,-1.8 -2,-0.7 2,-0.3 -0.617 4.2-145.2 -93.4 164.1 1.2 15.5 14.5 42 42 A R E +C 33 0B 149 -9,-0.2 2,-0.3 -2,-0.2 -9,-0.2 -0.932 25.4 152.6-128.0 149.6 4.4 15.1 12.6 43 43 A G E -C 32 0B 2 -11,-2.1 -11,-2.5 -2,-0.3 2,-0.3 -0.975 16.4-166.7-167.1 166.2 8.0 15.0 13.8 44 44 A A E -C 31 0B 28 -2,-0.3 -37,-0.4 -37,-0.3 2,-0.3 -0.982 1.0-167.2-161.3 151.1 11.5 13.6 13.1 45 45 A V E -C 30 0B 14 -15,-2.6 -15,-3.0 -2,-0.3 2,-0.3 -0.894 35.7 -96.7-136.6 161.5 14.8 13.1 14.8 46 46 A S E > -C 29 0B 43 -2,-0.3 3,-1.4 -17,-0.2 4,-0.3 -0.618 40.5-116.3 -73.4 143.5 18.3 12.3 13.7 47 47 A E G > S+ 0 0 72 -19,-2.2 3,-0.7 1,-0.3 -1,-0.1 0.773 116.9 58.9 -49.7 -32.4 18.9 8.5 14.1 48 48 A K G 3 S+ 0 0 157 1,-0.2 -1,-0.3 -20,-0.2 -20,-0.0 0.810 106.7 45.1 -69.8 -31.8 21.6 9.5 16.6 49 49 A D G < S+ 0 0 100 -3,-1.4 -1,-0.2 2,-0.1 -44,-0.2 0.288 89.7 110.0 -94.1 8.7 19.1 11.3 18.8 50 50 A A < - 0 0 12 -3,-0.7 2,-0.1 -4,-0.3 -46,-0.1 -0.752 69.4-129.0 -89.8 127.4 16.5 8.5 18.6 51 51 A P >> - 0 0 41 0, 0.0 4,-1.6 0, 0.0 3,-1.1 -0.405 29.8-107.1 -66.8 152.4 16.0 6.6 21.8 52 52 A K H 3> S+ 0 0 147 1,-0.3 4,-2.3 2,-0.2 5,-0.2 0.826 118.4 62.1 -48.6 -41.7 16.2 2.7 21.2 53 53 A E H 3> S+ 0 0 75 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.873 103.8 47.5 -52.6 -46.4 12.4 2.4 21.6 54 54 A L H <> S+ 0 0 0 -3,-1.1 4,-2.0 2,-0.2 -1,-0.2 0.878 113.0 48.3 -65.7 -37.8 11.8 4.6 18.5 55 55 A L H X S+ 0 0 56 -4,-1.6 4,-2.4 2,-0.2 -2,-0.2 0.828 108.7 55.0 -69.4 -32.0 14.5 2.6 16.5 56 56 A D H X S+ 0 0 64 -4,-2.3 4,-1.9 -5,-0.2 -2,-0.2 0.904 109.5 46.7 -63.4 -45.9 12.7 -0.6 17.8 57 57 A M H X S+ 0 0 18 -4,-1.9 4,-2.2 2,-0.2 -2,-0.2 0.861 110.9 52.3 -65.2 -37.3 9.4 0.7 16.3 58 58 A L H X S+ 0 0 6 -4,-2.0 4,-3.0 2,-0.2 -2,-0.2 0.919 107.9 50.8 -64.6 -42.9 11.2 1.7 13.0 59 59 A A H X S+ 0 0 40 -4,-2.4 4,-0.6 1,-0.2 -2,-0.2 0.907 110.7 50.3 -63.5 -39.0 12.6 -1.8 12.7 60 60 A R H >< S+ 0 0 147 -4,-1.9 3,-0.7 1,-0.2 4,-0.5 0.898 111.0 47.5 -66.9 -39.1 9.1 -3.2 13.2 61 61 A A H >< S+ 0 0 16 -4,-2.2 3,-1.6 1,-0.2 -2,-0.2 0.921 107.3 57.3 -67.0 -41.2 7.7 -0.8 10.6 62 62 A E H 3< S+ 0 0 118 -4,-3.0 -1,-0.2 1,-0.3 -2,-0.2 0.636 102.9 55.7 -63.2 -15.9 10.5 -1.8 8.2 63 63 A R T << S+ 0 0 149 -3,-0.7 -1,-0.3 -4,-0.6 -2,-0.2 0.580 77.0 124.5 -92.5 -9.4 9.4 -5.5 8.5 64 64 A E < - 0 0 143 -3,-1.6 -3,-0.0 -4,-0.5 -4,-0.0 -0.300 35.7-178.8 -57.0 122.0 5.8 -4.8 7.5 65 65 A K 0 0 165 1,-0.5 -1,-0.2 -2,-0.1 -3,-0.1 -0.097 360.0 360.0-107.3 27.9 4.9 -7.0 4.5 66 66 A K 0 0 272 0, 0.0 -1,-0.5 0, 0.0 0, 0.0 0.189 360.0 360.0 82.9 360.0 1.5 -5.3 4.6