==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 20-NOV-97 1AZQ . COMPND 2 MOLECULE: DNA (5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.ROBINSON,Y.-G.GAO,B.S.MCCRARY,S.P.EDMONDSON,J.W.SHRIVER, . 66 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5009.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 48 72.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 24 36.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 3 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 12.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 15.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 173 0, 0.0 2,-0.6 0, 0.0 15,-0.0 0.000 360.0 360.0 360.0-115.5 6.5 6.5 29.3 2 2 A V - 0 0 43 49,-0.0 15,-2.6 51,-0.0 2,-0.4 -0.965 360.0-160.5-117.5 115.1 9.1 7.4 26.7 3 3 A K E -A 16 0A 94 -2,-0.6 2,-0.5 13,-0.2 13,-0.2 -0.836 5.4-156.7 -94.2 131.8 9.1 11.0 25.6 4 4 A V E -A 15 0A 2 11,-3.1 11,-2.5 -2,-0.4 2,-0.4 -0.953 13.5-155.3-107.6 123.4 10.7 12.1 22.3 5 5 A K E +A 14 0A 146 -2,-0.5 2,-0.3 44,-0.3 9,-0.3 -0.877 24.7 156.1 -99.2 137.7 11.7 15.8 22.5 6 6 A F E -A 13 0A 7 7,-2.8 7,-3.8 -2,-0.4 2,-0.5 -0.998 39.9-125.5-160.0 157.3 12.0 17.6 19.2 7 7 A K E +A 12 0A 131 -2,-0.3 2,-0.4 37,-0.3 5,-0.3 -0.928 29.8 172.4-109.0 123.7 12.0 21.0 17.6 8 8 A Y E > S-A 11 0A 81 3,-2.7 3,-1.5 -2,-0.5 -2,-0.1 -0.991 73.4 -3.7-132.8 124.5 9.5 21.5 14.7 9 9 A K T 3 S- 0 0 184 -2,-0.4 -1,-0.2 1,-0.3 2,-0.1 0.955 131.5 -58.8 59.1 43.9 8.9 24.8 13.1 10 10 A G T 3 S+ 0 0 66 1,-0.2 2,-0.3 -3,-0.1 -1,-0.3 0.189 114.5 117.6 73.9 -20.1 11.2 26.3 15.8 11 11 A E E < -A 8 0A 115 -3,-1.5 -3,-2.7 -2,-0.1 2,-0.4 -0.612 64.1-132.2 -84.9 136.4 9.0 25.0 18.5 12 12 A E E -A 7 0A 88 -2,-0.3 2,-0.3 -5,-0.3 -5,-0.3 -0.756 34.2-179.6 -85.4 131.9 10.3 22.5 21.1 13 13 A K E -A 6 0A 47 -7,-3.8 -7,-2.8 -2,-0.4 2,-0.4 -0.867 20.4-155.5-129.2 166.0 7.9 19.6 21.5 14 14 A E E +A 5 0A 108 -2,-0.3 2,-0.3 -9,-0.3 -9,-0.2 -0.993 16.9 178.3-143.9 131.4 7.7 16.4 23.5 15 15 A V E -A 4 0A 11 -11,-2.5 -11,-3.1 -2,-0.4 2,-0.3 -0.991 28.5-118.9-140.5 145.9 5.7 13.4 22.5 16 16 A D E > -A 3 0A 17 -2,-0.3 3,-2.2 -13,-0.2 4,-0.4 -0.685 22.2-129.3 -83.6 139.0 5.1 9.9 24.0 17 17 A T G > S+ 0 0 10 -15,-2.6 3,-0.8 -2,-0.3 -1,-0.1 0.709 105.7 69.6 -58.9 -19.3 6.2 7.0 21.8 18 18 A S G 3 S+ 0 0 79 -16,-0.3 -1,-0.3 1,-0.2 -2,-0.0 0.646 97.3 50.6 -74.0 -16.1 2.7 5.5 22.4 19 19 A K G < S+ 0 0 72 -3,-2.2 16,-2.2 15,-0.0 2,-0.5 0.525 83.7 113.5 -97.5 -5.7 1.1 8.3 20.3 20 20 A I E < -B 34 0B 16 -3,-0.8 14,-0.3 -4,-0.4 3,-0.1 -0.548 40.6-179.0 -73.6 118.0 3.6 7.7 17.4 21 21 A K E + 0 0 113 12,-2.0 2,-0.3 -2,-0.5 13,-0.2 0.904 63.9 10.0 -83.2 -48.3 1.7 6.3 14.3 22 22 A K E -B 33 0B 130 11,-1.0 11,-1.8 2,-0.0 2,-0.3 -0.983 59.4-169.8-139.1 148.2 4.5 5.8 11.7 23 23 A V E +B 32 0B 15 -2,-0.3 2,-0.3 9,-0.2 9,-0.2 -0.994 11.9 163.2-137.4 144.6 8.3 5.9 11.8 24 24 A W E -B 31 0B 100 7,-2.4 7,-2.3 -2,-0.3 2,-0.4 -0.976 32.0-117.2-158.4 157.6 10.9 5.9 9.0 25 25 A R E -B 30 0B 98 -2,-0.3 2,-0.3 5,-0.2 5,-0.2 -0.825 19.2-177.4-102.3 138.7 14.6 6.6 8.5 26 26 A V E > -B 29 0B 63 3,-3.0 3,-1.7 -2,-0.4 2,-0.4 -0.818 69.9 -58.0-135.8 89.3 15.8 9.4 6.1 27 27 A G T 3 S- 0 0 61 -2,-0.3 -1,-0.1 1,-0.3 0, 0.0 -0.588 118.9 -21.6 72.0-127.3 19.6 9.1 6.2 28 28 A K T 3 S+ 0 0 170 -2,-0.4 19,-2.2 -3,-0.1 2,-0.3 0.213 123.1 96.9 -96.0 10.6 20.7 9.6 9.8 29 29 A M E < -BC 26 46B 84 -3,-1.7 -3,-3.0 17,-0.2 2,-0.5 -0.804 63.6-148.6-104.0 144.3 17.4 11.3 10.6 30 30 A V E -BC 25 45B 0 15,-2.7 15,-1.8 -2,-0.3 2,-0.3 -0.953 17.6-170.9-114.9 112.0 14.3 9.6 12.0 31 31 A S E +BC 24 44B 18 -7,-2.3 -7,-2.4 -2,-0.5 2,-0.3 -0.722 11.0 160.7-101.8 157.4 10.9 10.9 11.0 32 32 A F E -BC 23 43B 1 11,-2.4 11,-2.0 -2,-0.3 2,-0.3 -0.963 29.6-133.1-162.9 169.1 7.5 10.1 12.3 33 33 A T E -BC 22 42B 25 -11,-1.8 -12,-2.0 -2,-0.3 -11,-1.0 -0.932 25.2-173.1-129.5 149.7 3.9 11.1 12.7 34 34 A Y E -BC 20 41B 9 7,-1.4 7,-3.2 -2,-0.3 2,-1.0 -0.942 37.5 -88.7-141.3 166.2 1.9 11.1 15.9 35 35 A D E - C 0 40B 54 -16,-2.2 2,-0.7 -2,-0.3 5,-0.2 -0.684 33.3-173.0 -78.7 102.8 -1.6 11.6 17.1 36 36 A D E > S- C 0 39B 60 3,-2.4 3,-0.8 -2,-1.0 -1,-0.1 -0.355 72.9 -69.0 -93.6 48.5 -1.7 15.3 17.8 37 37 A N T 3 S- 0 0 147 -2,-0.7 2,-1.3 1,-0.3 -1,-0.1 0.990 107.8 -29.3 62.8 69.3 -5.2 14.7 19.3 38 38 A G T 3 S+ 0 0 62 1,-0.2 -1,-0.3 0, 0.0 2,-0.1 -0.514 130.4 82.7 92.0 -66.8 -7.1 13.8 16.2 39 39 A K E < S-C 36 0B 150 -2,-1.3 -3,-2.4 -3,-0.8 2,-0.5 -0.452 87.6-114.8 -74.2 142.8 -5.0 15.9 13.9 40 40 A T E -C 35 0B 77 -5,-0.2 -5,-0.2 -2,-0.1 2,-0.1 -0.719 28.6-154.8 -83.7 125.1 -1.7 14.2 12.8 41 41 A G E -C 34 0B 7 -7,-3.2 -7,-1.4 -2,-0.5 2,-0.3 -0.469 1.1-145.9 -94.8 166.1 1.6 15.7 13.9 42 42 A R E +C 33 0B 152 -9,-0.2 2,-0.3 -2,-0.1 -9,-0.2 -0.954 24.9 154.3-129.6 145.2 5.0 15.4 12.2 43 43 A G E -C 32 0B 4 -11,-2.0 -11,-2.4 -2,-0.3 2,-0.3 -0.976 17.0-169.0-162.6 164.8 8.4 15.3 13.8 44 44 A A E -C 31 0B 32 -2,-0.3 2,-0.3 -13,-0.2 -37,-0.3 -0.968 5.4-175.0-160.1 145.6 12.0 14.1 13.3 45 45 A V E -C 30 0B 13 -15,-1.8 -15,-2.7 -2,-0.3 2,-0.2 -0.897 38.5 -87.6-138.5 165.3 15.1 13.7 15.5 46 46 A S E > -C 29 0B 54 -2,-0.3 3,-1.6 -17,-0.2 4,-0.3 -0.549 36.2-122.5 -73.1 143.8 18.7 12.8 15.0 47 47 A E G > S+ 0 0 51 -19,-2.2 3,-0.6 1,-0.3 -1,-0.1 0.769 118.0 55.2 -55.7 -27.0 19.2 9.0 15.2 48 48 A K G 3 S+ 0 0 172 -20,-0.3 -1,-0.3 1,-0.2 -19,-0.1 0.690 106.5 49.9 -80.2 -19.7 21.7 10.0 18.0 49 49 A D G < S+ 0 0 123 -3,-1.6 -44,-0.3 2,-0.1 -1,-0.2 0.253 89.0 105.8 -98.2 5.9 18.9 11.9 19.8 50 50 A A S < S- 0 0 14 -3,-0.6 2,-0.1 -4,-0.3 -46,-0.1 -0.738 72.2-124.5 -94.3 130.6 16.4 9.1 19.7 51 51 A P >> - 0 0 38 0, 0.0 3,-2.0 0, 0.0 4,-1.4 -0.501 33.1-108.3 -66.4 147.5 15.6 7.0 22.8 52 52 A K H 3> S+ 0 0 139 1,-0.3 4,-2.2 2,-0.2 3,-0.2 0.853 116.4 64.8 -45.7 -40.9 16.2 3.3 22.2 53 53 A E H 3> S+ 0 0 79 1,-0.3 4,-1.5 2,-0.2 -1,-0.3 0.829 102.2 46.9 -53.7 -37.5 12.4 2.6 22.2 54 54 A L H <> S+ 0 0 0 -3,-2.0 4,-1.5 2,-0.2 -1,-0.3 0.864 110.7 52.0 -73.5 -37.1 11.9 4.7 19.0 55 55 A L H X S+ 0 0 51 -4,-1.4 4,-1.9 -3,-0.2 -2,-0.2 0.818 107.9 53.3 -67.8 -29.0 14.8 3.0 17.3 56 56 A D H X S+ 0 0 56 -4,-2.2 4,-2.2 -5,-0.2 -1,-0.2 0.866 106.7 50.9 -72.4 -38.7 13.2 -0.3 18.2 57 57 A M H X S+ 0 0 40 -4,-1.5 4,-1.1 2,-0.2 -1,-0.2 0.782 111.0 50.1 -65.6 -33.5 9.9 0.7 16.6 58 58 A L H X S+ 0 0 2 -4,-1.5 4,-2.2 2,-0.2 -2,-0.2 0.888 108.4 51.7 -70.9 -43.4 11.9 1.7 13.4 59 59 A A H X S+ 0 0 42 -4,-1.9 4,-0.8 1,-0.2 -2,-0.2 0.911 110.7 48.1 -59.3 -44.8 13.6 -1.6 13.4 60 60 A R H X S+ 0 0 123 -4,-2.2 4,-0.8 1,-0.2 3,-0.4 0.844 109.4 55.1 -67.0 -28.8 10.3 -3.4 13.6 61 61 A A H >< S+ 0 0 37 -4,-1.1 3,-0.6 1,-0.2 -2,-0.2 0.899 104.0 53.1 -69.6 -38.8 9.0 -1.1 10.8 62 62 A E H 3< S+ 0 0 117 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.676 107.7 52.7 -69.4 -19.1 11.8 -2.1 8.5 63 63 A R H 3< S+ 0 0 158 -4,-0.8 -1,-0.2 -3,-0.4 -2,-0.2 0.635 81.3 118.6 -92.6 -16.6 11.0 -5.8 9.0 64 64 A E << + 0 0 156 -4,-0.8 2,-0.2 -3,-0.6 -3,-0.0 -0.140 40.6 179.5 -53.3 143.2 7.2 -5.5 8.1 65 65 A K 0 0 152 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.684 360.0 360.0-135.3-173.0 6.0 -7.5 5.2 66 66 A K 0 0 270 -2,-0.2 -2,-0.0 0, 0.0 0, 0.0 -0.711 360.0 360.0 77.2 360.0 2.9 -8.3 3.1