==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 14-SEP-05 2B0G . COMPND 2 MOLECULE: U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A; . SOURCE 2 ORGANISM_SCIENTIFIC: DROSOPHILA MELANOGASTER; . AUTHOR G.CUI,C.LI,C.JIN,B.XIA . 83 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5169.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 50 60.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 19 22.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 10 12.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 16 19.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A A 0 0 149 0, 0.0 2,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 142.9 7.5 -6.6 -1.9 2 2 A Q - 0 0 55 79,-0.0 2,-0.3 1,-0.0 79,-0.1 -0.296 360.0-158.8 -62.8 157.9 8.9 -3.2 -0.9 3 3 A T - 0 0 57 77,-0.3 77,-0.3 -2,-0.0 2,-0.2 -0.988 15.0-130.5-141.3 144.0 8.1 -1.9 2.6 4 4 A E + 0 0 119 -2,-0.3 75,-0.1 75,-0.2 77,-0.0 -0.625 34.6 167.5 -85.1 159.5 7.9 1.4 4.4 5 5 A Q - 0 0 95 -2,-0.2 3,-0.1 3,-0.0 75,-0.1 -0.895 47.8 -62.3-151.7 170.3 9.7 1.7 7.8 6 6 A P S S- 0 0 103 0, 0.0 74,-0.0 0, 0.0 0, 0.0 -0.355 87.4 -64.7 -49.0 150.6 10.8 4.4 10.3 7 7 A P + 0 0 66 0, 0.0 2,-0.3 0, 0.0 48,-0.1 -0.043 59.6 178.5 -48.5 144.8 13.3 6.7 8.4 8 8 A N - 0 0 16 47,-0.3 73,-0.1 2,-0.2 46,-0.1 -0.972 40.0-116.6-145.7 151.8 16.7 5.3 7.2 9 9 A Q S S+ 0 0 45 -2,-0.3 43,-2.6 44,-0.1 2,-0.3 0.252 97.3 67.0 -75.1 10.2 19.5 7.0 5.3 10 10 A I E -A 51 0A 31 71,-0.3 71,-1.9 41,-0.2 2,-0.3 -0.992 66.8-160.7-136.0 141.5 19.0 4.6 2.3 11 11 A L E -AB 50 80A 0 39,-2.8 39,-1.9 -2,-0.3 2,-0.4 -0.883 10.0-148.8-123.4 151.5 16.0 4.4 -0.0 12 12 A F E -AB 49 79A 50 67,-2.6 67,-2.3 -2,-0.3 2,-0.3 -0.978 22.2-161.1-123.0 132.4 14.8 1.6 -2.4 13 13 A L E +AB 48 78A 0 35,-2.9 35,-1.9 -2,-0.4 65,-0.2 -0.907 11.5 176.5-127.0 145.6 13.0 2.9 -5.5 14 14 A T E + B 0 77A 13 63,-1.5 63,-2.5 -2,-0.3 33,-0.2 -0.816 54.4 47.3-143.7 174.3 10.6 1.2 -7.9 15 15 A N S S+ 0 0 74 31,-0.3 32,-0.2 -2,-0.2 -1,-0.1 0.760 76.1 152.8 56.8 28.4 8.4 1.9 -11.1 16 16 A L - 0 0 2 30,-2.3 -1,-0.2 1,-0.2 59,-0.1 -0.390 53.0 -75.6 -78.5 162.0 11.4 3.7 -12.7 17 17 A P > - 0 0 8 0, 0.0 3,-1.5 0, 0.0 -1,-0.2 -0.202 34.7-120.7 -50.8 150.7 11.9 3.9 -16.5 18 18 A E T 3 S+ 0 0 151 1,-0.3 28,-0.1 28,-0.1 29,-0.0 0.481 117.0 46.5 -68.9 -3.1 13.2 0.9 -18.4 19 19 A E T 3 S+ 0 0 164 26,-0.1 -1,-0.3 2,-0.1 26,-0.1 0.065 79.7 149.9-129.2 15.3 16.2 3.1 -19.4 20 20 A T < - 0 0 4 -3,-1.5 2,-0.3 24,-0.1 24,-0.1 -0.274 26.4-163.4 -55.7 141.8 17.0 4.7 -15.9 21 21 A N >> - 0 0 85 1,-0.1 4,-1.2 19,-0.0 3,-1.2 -0.943 30.3-116.5-129.5 147.6 20.7 5.6 -15.5 22 22 A E H 3> S+ 0 0 101 -2,-0.3 4,-2.7 1,-0.3 5,-0.2 0.876 114.1 59.0 -50.5 -43.0 22.6 6.3 -12.2 23 23 A M H 3> S+ 0 0 146 1,-0.2 4,-2.5 2,-0.2 -1,-0.3 0.793 100.1 56.8 -61.4 -32.3 23.3 9.9 -13.4 24 24 A M H <> S+ 0 0 83 -3,-1.2 4,-2.2 2,-0.2 -1,-0.2 0.966 111.9 40.0 -64.6 -52.5 19.5 10.6 -13.7 25 25 A L H X S+ 0 0 0 -4,-1.2 4,-2.9 2,-0.2 5,-0.3 0.910 114.3 54.2 -67.2 -39.7 18.8 9.7 -10.1 26 26 A S H X S+ 0 0 29 -4,-2.7 4,-2.7 1,-0.2 -1,-0.2 0.944 110.0 47.4 -57.2 -46.9 22.0 11.4 -8.9 27 27 A M H < S+ 0 0 141 -4,-2.5 4,-0.3 1,-0.2 -2,-0.2 0.889 115.3 46.0 -62.7 -39.4 20.9 14.7 -10.6 28 28 A L H >< S+ 0 0 31 -4,-2.2 3,-0.6 1,-0.2 -2,-0.2 0.929 120.3 36.5 -68.6 -46.7 17.4 14.4 -9.2 29 29 A F H >< S+ 0 0 0 -4,-2.9 3,-2.4 1,-0.2 6,-0.3 0.795 100.3 73.8 -84.6 -25.7 18.4 13.6 -5.5 30 30 A N T 3< S+ 0 0 107 -4,-2.7 -1,-0.2 -5,-0.3 -2,-0.1 0.634 78.5 80.1 -63.3 -12.0 21.6 15.9 -5.4 31 31 A Q T < S+ 0 0 138 -3,-0.6 -1,-0.3 -4,-0.3 -2,-0.1 0.781 83.3 73.9 -58.1 -28.2 19.1 18.8 -5.2 32 32 A F S X S- 0 0 43 -3,-2.4 3,-1.7 -4,-0.1 25,-0.0 -0.766 88.8-130.6 -93.8 136.6 18.9 17.9 -1.5 33 33 A P T 3 S+ 0 0 127 0, 0.0 -1,-0.1 0, 0.0 -3,-0.1 0.432 102.3 54.5 -71.9 1.7 21.9 18.8 0.7 34 34 A G T 3 S+ 0 0 0 -5,-0.2 19,-2.7 23,-0.1 20,-0.3 0.320 76.2 121.0-115.2 1.7 22.2 15.3 2.3 35 35 A F E < +C 52 0A 32 -3,-1.7 17,-0.3 -6,-0.3 3,-0.1 -0.380 24.7 162.1 -61.7 148.7 22.4 13.1 -0.9 36 36 A K E - 0 0 113 15,-2.5 2,-0.3 1,-0.4 16,-0.2 0.600 51.5 -15.8-130.4 -48.3 25.5 10.9 -1.3 37 37 A E E -C 51 0A 99 14,-1.9 14,-2.7 2,-0.0 -1,-0.4 -0.943 41.2-141.2-158.1 171.1 25.0 8.1 -3.9 38 38 A V E -C 50 0A 6 -2,-0.3 2,-0.4 12,-0.3 12,-0.3 -0.955 5.4-160.0-136.8 152.5 22.8 5.8 -6.1 39 39 A R E -C 49 0A 142 10,-2.6 10,-2.2 -2,-0.3 2,-0.1 -0.913 16.3-164.1-136.3 106.0 23.0 2.1 -7.0 40 40 A L E -C 48 0A 22 -2,-0.4 8,-0.2 8,-0.2 6,-0.1 -0.299 24.2-124.2 -72.5 171.9 21.1 1.2 -10.2 41 41 A V >> - 0 0 31 6,-0.8 4,-2.9 -2,-0.1 3,-2.2 -0.899 23.9-164.6-116.8 93.0 20.1 -2.4 -11.2 42 42 A P T 34 S+ 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.350 83.6 55.4 -71.5 8.0 21.7 -2.5 -14.7 43 43 A N T 34 S+ 0 0 132 0, 0.0 -3,-0.0 0, 0.0 0, 0.0 0.296 127.3 13.4-116.3 3.8 19.7 -5.6 -15.7 44 44 A R T <4 - 0 0 139 -3,-2.2 2,-1.5 3,-0.2 -24,-0.1 0.502 69.3-169.3-142.2 -39.8 16.2 -4.2 -14.9 45 45 A H < + 0 0 57 -4,-2.9 -26,-0.1 2,-0.2 -27,-0.1 -0.068 68.6 94.0 61.7 -29.3 16.5 -0.3 -14.5 46 46 A D S S+ 0 0 45 -2,-1.5 -30,-2.3 -28,-0.1 -31,-0.3 0.534 88.9 43.4 -71.1 -5.5 12.9 -0.2 -13.2 47 47 A I + 0 0 20 -6,-0.2 -6,-0.8 -33,-0.2 2,-0.3 -0.945 67.5 156.3-132.4 157.4 14.3 -0.4 -9.6 48 48 A A E -AC 13 40A 0 -35,-1.9 -35,-2.9 -2,-0.3 2,-0.3 -0.944 30.0-124.0-159.9 177.1 17.2 1.3 -7.8 49 49 A F E -AC 12 39A 71 -10,-2.2 -10,-2.6 -2,-0.3 2,-0.3 -0.936 16.9-163.7-130.3 156.1 18.7 2.4 -4.4 50 50 A V E -AC 11 38A 1 -39,-1.9 -39,-2.8 -2,-0.3 2,-0.3 -0.965 6.7-152.5-140.2 148.9 19.8 5.8 -3.2 51 51 A E E -AC 10 37A 54 -14,-2.7 -15,-2.5 -2,-0.3 -14,-1.9 -0.961 11.6-177.3-136.0 145.0 21.9 6.8 -0.1 52 52 A F E - C 0 35A 0 -43,-2.6 -17,-0.2 -2,-0.3 3,-0.1 -0.817 38.2-112.1-138.1 164.8 22.1 9.9 2.1 53 53 A T S S+ 0 0 73 -19,-2.7 2,-0.3 -2,-0.2 -44,-0.1 0.876 98.4 14.1 -69.9 -40.2 24.1 11.3 5.0 54 54 A T S >> S- 0 0 56 -20,-0.3 4,-1.8 -46,-0.1 3,-0.8 -0.977 70.6-119.2-146.6 153.0 21.1 11.2 7.5 55 55 A E H 3> S+ 0 0 84 -2,-0.3 4,-2.1 1,-0.3 -47,-0.3 0.761 111.2 57.3 -62.3 -33.1 17.6 9.6 7.8 56 56 A L H 3> S+ 0 0 132 2,-0.2 4,-2.0 1,-0.2 -1,-0.3 0.830 107.6 47.9 -70.2 -31.2 15.8 12.9 8.0 57 57 A Q H <> S+ 0 0 60 -3,-0.8 4,-2.4 2,-0.2 -2,-0.2 0.887 111.7 47.6 -83.5 -36.3 17.3 14.1 4.6 58 58 A S H X S+ 0 0 0 -4,-1.8 4,-2.8 2,-0.2 -2,-0.2 0.914 112.5 52.4 -64.1 -39.8 16.4 10.8 2.8 59 59 A N H X S+ 0 0 58 -4,-2.1 4,-2.6 2,-0.2 5,-0.2 0.935 109.1 48.7 -58.2 -46.9 12.9 11.2 4.4 60 60 A A H X S+ 0 0 52 -4,-2.0 4,-2.1 1,-0.2 -2,-0.2 0.935 113.3 46.9 -59.0 -46.2 12.7 14.8 3.0 61 61 A A H X S+ 0 0 0 -4,-2.4 4,-1.6 2,-0.2 -2,-0.2 0.890 110.8 53.0 -63.4 -40.8 13.8 13.6 -0.4 62 62 A K H >X S+ 0 0 6 -4,-2.8 4,-2.3 2,-0.2 3,-0.7 0.964 112.0 43.9 -57.3 -54.4 11.3 10.7 -0.3 63 63 A E H 3< S+ 0 0 116 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.845 115.3 50.8 -63.3 -32.7 8.4 13.0 0.5 64 64 A A H 3< S+ 0 0 57 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.760 121.8 28.8 -72.8 -28.1 9.6 15.5 -2.2 65 65 A L H X< S+ 0 0 10 -4,-1.6 3,-2.4 -3,-0.7 2,-0.2 0.506 78.1 120.8-123.5 -7.7 9.9 12.9 -5.0 66 66 A Q T 3< S+ 0 0 78 -4,-2.3 11,-0.2 1,-0.3 10,-0.0 -0.459 92.1 15.7 -55.2 121.4 7.3 10.1 -4.4 67 67 A G T 3 S+ 0 0 44 9,-3.0 -1,-0.3 1,-0.3 2,-0.3 0.264 89.4 147.4 95.2 -7.9 5.2 10.3 -7.5 68 68 A F < - 0 0 93 -3,-2.4 8,-2.9 8,-0.4 2,-0.8 -0.434 50.6-127.5 -65.3 121.9 7.7 12.3 -9.6 69 69 A K B -D 75 0B 113 6,-0.3 6,-0.3 -2,-0.3 -1,-0.1 -0.620 24.2-176.3 -67.9 107.1 7.5 11.4 -13.3 70 70 A I S S+ 0 0 29 4,-2.4 -1,-0.2 -2,-0.8 5,-0.1 0.926 89.9 0.2 -66.7 -42.9 11.1 10.6 -14.3 71 71 A T S > S- 0 0 58 3,-0.5 3,-2.5 -3,-0.1 -1,-0.3 -0.877 102.4 -88.9-132.8 164.9 9.5 10.2 -17.7 72 72 A P T 3 S+ 0 0 105 0, 0.0 3,-0.1 0, 0.0 -3,-0.1 0.673 126.3 37.6 -51.1 -25.5 5.7 10.7 -18.4 73 73 A T T 3 S+ 0 0 110 1,-0.2 2,-0.4 -4,-0.0 -4,-0.0 0.274 104.0 75.8-109.6 7.0 4.7 7.1 -17.6 74 74 A H < - 0 0 38 -3,-2.5 -4,-2.4 2,-0.0 2,-0.6 -0.696 55.9-174.7-133.1 73.5 7.2 6.4 -14.7 75 75 A A B -D 69 0B 25 -2,-0.4 2,-0.3 -6,-0.3 -6,-0.3 -0.643 36.0-118.2 -61.3 114.8 6.1 8.0 -11.4 76 76 A M - 0 0 0 -8,-2.9 -9,-3.0 -2,-0.6 -8,-0.4 -0.451 26.0-157.6 -58.8 116.7 9.0 7.2 -9.1 77 77 A K E -B 14 0A 107 -63,-2.5 -63,-1.5 -2,-0.3 2,-0.3 -0.771 13.1-169.5 -88.8 150.7 8.0 5.1 -6.1 78 78 A I E +B 13 0A 2 -2,-0.3 2,-0.3 -65,-0.2 -65,-0.2 -0.992 13.3 168.0-143.8 141.7 10.3 5.4 -3.1 79 79 A T E -B 12 0A 8 -67,-2.3 -67,-2.6 -2,-0.3 2,-0.4 -0.917 44.0 -92.9-143.2 159.7 10.5 3.3 0.2 80 80 A F E -B 11 0A 8 -77,-0.3 -77,-0.3 -2,-0.3 -69,-0.3 -0.684 39.2-138.1 -73.5 131.8 13.1 3.2 2.9 81 81 A A - 0 0 11 -71,-1.9 -71,-0.3 -2,-0.4 2,-0.3 -0.414 19.2-126.4 -73.9 169.1 15.7 0.5 2.3 82 82 A K 0 0 129 -2,-0.1 -74,-0.0 -71,-0.1 -71,-0.0 -0.856 360.0 360.0-123.4 153.9 16.8 -1.6 5.4 83 83 A K 0 0 203 -2,-0.3 -73,-0.0 -73,-0.0 0, 0.0 -0.922 360.0 360.0-114.0 360.0 20.3 -2.4 6.7