==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PRION PROTEIN 25-NOV-98 1B10 . COMPND 2 MOLECULE: PROTEIN (PRION PROTEIN); . SOURCE 2 ORGANISM_SCIENTIFIC: MESOCRICETUS AURATUS; . AUTHOR T.L.JAMES,H.LIU,N.B.ULYANOV,S.FARR-JONES . 104 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6621.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 72 69.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 5 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 1.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 6.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 53 51.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 1 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 125 A L 0 0 131 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -54.7 9.8 -12.4 -4.8 2 126 A G - 0 0 73 2,-0.2 0, 0.0 0, 0.0 0, 0.0 0.020 360.0 -38.5 152.2 -18.5 11.8 -10.9 -7.8 3 127 A G S S+ 0 0 39 1,-0.1 2,-0.2 37,-0.0 0, 0.0 0.486 93.3 132.0 149.6 32.4 13.6 -7.9 -6.2 4 128 A Y - 0 0 64 36,-0.1 2,-0.3 54,-0.0 36,-0.2 -0.654 33.8-160.9-115.1 162.8 11.2 -6.2 -3.8 5 129 A M E -A 39 0A 99 34,-1.7 34,-2.5 -2,-0.2 2,-0.7 -0.985 26.9-120.5-148.6 119.0 11.5 -4.9 -0.2 6 130 A L E -A 38 0A 67 -2,-0.3 32,-0.3 32,-0.3 3,-0.1 -0.593 31.7-167.1 -65.6 107.3 8.8 -4.1 2.4 7 131 A G E - 0 0 28 30,-2.7 2,-0.3 -2,-0.7 -1,-0.2 0.939 48.5 -41.8 -68.6 -63.2 9.5 -0.3 3.0 8 132 A S E - 0 0 60 29,-0.5 29,-0.7 2,-0.0 2,-0.5 -0.934 48.3-109.1-163.7 158.7 7.4 0.6 6.1 9 133 A A E -A 36 0A 52 -2,-0.3 2,-0.4 27,-0.2 27,-0.3 -0.809 35.7-125.2 -87.5 126.0 4.1 0.1 7.8 10 134 A M - 0 0 11 25,-2.0 2,-2.0 -2,-0.5 79,-0.0 -0.643 19.6-124.6 -75.7 128.5 1.9 3.2 7.9 11 135 A S S S- 0 0 114 -2,-0.4 -1,-0.1 1,-0.2 -2,-0.0 -0.464 71.2 -63.8 -77.4 67.2 0.8 4.0 11.4 12 136 A R - 0 0 145 -2,-2.0 -1,-0.2 23,-0.1 19,-0.0 0.959 69.1-153.9 39.5 76.9 -3.0 4.0 10.7 13 137 A P - 0 0 46 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.642 7.7-139.9 -54.3 -33.6 -2.5 6.9 8.3 14 138 A M + 0 0 110 1,-0.1 2,-0.2 9,-0.1 -3,-0.0 0.949 41.0 150.9 57.5 100.1 -6.0 8.6 8.4 15 139 A M - 0 0 38 8,-0.1 2,-0.4 0, 0.0 -1,-0.1 -0.848 39.9-109.9-148.2 171.9 -6.8 9.6 4.8 16 140 A H - 0 0 127 -2,-0.2 4,-0.1 1,-0.1 0, 0.0 -0.976 14.5-174.2-126.7 129.9 -9.8 10.2 2.4 17 141 A F - 0 0 23 -2,-0.4 -1,-0.1 2,-0.2 3,-0.1 0.714 57.0-113.2 -73.0 -33.9 -10.9 8.2 -0.7 18 142 A G S S+ 0 0 63 1,-0.5 2,-0.1 2,-0.0 -2,-0.0 -0.014 91.0 94.1 107.9 -14.0 -13.6 11.0 -1.2 19 143 A N - 0 0 52 1,-0.1 -1,-0.5 0, 0.0 -2,-0.2 -0.165 68.0-144.5 -93.1-177.4 -16.2 8.3 -0.4 20 144 A D S > S+ 0 0 112 3,-0.1 4,-2.3 -3,-0.1 5,-0.2 0.717 96.4 50.6-112.7 -52.6 -18.0 7.2 2.8 21 145 A W H > S+ 0 0 160 1,-0.2 4,-0.7 2,-0.2 0, 0.0 0.692 118.6 41.2 -68.3 -26.6 -18.4 3.4 2.5 22 146 A E H > S+ 0 0 26 2,-0.2 4,-2.1 3,-0.1 -1,-0.2 0.876 110.0 56.8 -83.3 -49.6 -14.6 3.1 1.7 23 147 A D H > S+ 0 0 11 1,-0.2 4,-1.7 2,-0.2 -2,-0.2 0.894 113.4 41.7 -48.3 -49.7 -13.5 5.7 4.3 24 148 A R H X S+ 0 0 111 -4,-2.3 4,-0.7 2,-0.2 -1,-0.2 0.846 107.1 58.8 -69.5 -40.5 -15.1 3.6 7.0 25 149 A Y H >X S+ 0 0 51 -4,-0.7 4,-1.1 -5,-0.2 3,-0.6 0.901 107.5 49.1 -67.3 -37.0 -14.1 0.2 5.8 26 150 A Y H >X S+ 0 0 5 -4,-2.1 4,-3.1 1,-0.2 3,-1.7 0.992 112.5 46.2 -54.2 -64.7 -10.4 1.2 6.1 27 151 A R H 3< S+ 0 0 118 -4,-1.7 -1,-0.2 1,-0.3 -2,-0.2 0.425 117.0 46.1 -72.5 5.7 -10.9 2.6 9.7 28 152 A E H << S+ 0 0 121 -4,-0.7 -1,-0.3 -3,-0.6 -2,-0.2 0.539 128.8 21.6-108.4 -18.5 -12.8 -0.6 10.7 29 153 A N H XX S+ 0 0 34 -3,-1.7 4,-2.1 -4,-1.1 3,-1.2 0.475 85.7 106.6-135.2 -7.0 -10.5 -3.2 9.1 30 154 A M T 3< S+ 0 0 25 -4,-3.1 -18,-0.1 1,-0.3 -3,-0.1 0.646 77.5 63.3 -47.9 -26.6 -7.0 -1.4 8.8 31 155 A N T 34 S+ 0 0 134 -5,-0.2 -1,-0.3 1,-0.2 4,-0.1 0.930 113.5 32.6 -69.4 -44.5 -5.8 -3.5 11.7 32 156 A R T <4 S+ 0 0 156 -3,-1.2 -2,-0.2 2,-0.1 -1,-0.2 0.808 107.6 93.6 -71.9 -35.3 -6.3 -6.7 9.6 33 157 A Y S < S- 0 0 9 -4,-2.1 2,-0.5 -7,-0.2 45,-0.0 -0.161 92.6 -93.3 -67.7 154.9 -5.4 -5.0 6.3 34 158 A P + 0 0 8 0, 0.0 52,-0.2 0, 0.0 -1,-0.1 -0.558 49.1 169.7 -61.2 117.6 -2.1 -4.8 4.5 35 159 A N + 0 0 48 -2,-0.5 -25,-2.0 -4,-0.1 2,-0.3 -0.211 52.9 70.6-130.4 28.3 -0.9 -1.5 5.9 36 160 A Q E S-A 9 0A 78 -27,-0.3 2,-0.3 -29,-0.0 -27,-0.2 -0.816 71.1-135.9-132.6 177.6 2.7 -1.8 4.6 37 161 A V E - 0 0 0 -29,-0.7 -30,-2.7 -2,-0.3 -29,-0.5 -0.996 2.6-146.9-149.3 133.4 4.1 -1.6 1.0 38 162 A Y E +A 6 0A 49 17,-0.6 21,-0.5 -2,-0.3 2,-0.3 -0.834 31.9 161.5 -95.9 132.1 6.7 -3.7 -1.0 39 163 A Y E -A 5 0A 6 -34,-2.5 -34,-1.7 -2,-0.4 13,-0.1 -0.980 39.9-117.3-151.2 166.8 8.9 -2.0 -3.6 40 164 A R - 0 0 66 -2,-0.3 2,-0.3 -36,-0.2 -36,-0.1 -0.235 59.0 -81.4 -72.2 173.9 12.0 -1.9 -5.8 41 165 A P > - 0 0 43 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 -0.711 31.5-127.4 -76.1 143.8 14.5 0.9 -5.2 42 166 A V G > S+ 0 0 12 -2,-0.3 3,-2.2 1,-0.2 5,-0.1 0.617 91.6 101.3 -59.5 -10.6 13.5 4.2 -6.8 43 167 A D G 3 S+ 0 0 100 1,-0.3 -1,-0.2 3,-0.0 55,-0.0 0.537 82.9 40.7 -57.4 -15.2 17.1 3.9 -8.3 44 168 A Q G < S+ 0 0 126 -3,-1.1 -1,-0.3 0, 0.0 2,-0.2 0.018 112.6 66.1-121.4 27.3 15.7 2.7 -11.7 45 169 A Y < - 0 0 42 -3,-2.2 3,-0.1 1,-0.1 -3,-0.0 -0.714 48.4-171.6-128.7 177.2 12.8 5.1 -11.9 46 170 A N S S+ 0 0 147 1,-0.3 2,-0.3 -2,-0.2 -1,-0.1 0.320 72.7 55.4-146.6 -9.0 12.1 8.8 -12.2 47 171 A N > - 0 0 64 1,-0.1 4,-0.9 -5,-0.1 -1,-0.3 -0.934 67.6-136.9-139.4 153.1 8.3 9.0 -11.6 48 172 A Q H > S+ 0 0 59 -2,-0.3 4,-3.4 2,-0.2 5,-0.3 0.960 89.3 58.9 -78.5 -56.2 6.0 7.9 -8.9 49 173 A N H > S+ 0 0 107 1,-0.2 4,-1.2 2,-0.2 -1,-0.1 0.748 109.1 43.4 -59.7 -36.4 2.9 6.4 -10.4 50 174 A N H > S+ 0 0 55 2,-0.2 4,-1.7 3,-0.1 -1,-0.2 0.884 116.7 45.7 -76.3 -42.9 4.6 3.6 -12.4 51 175 A F H X S+ 0 0 1 -4,-0.9 4,-3.0 -3,-0.2 3,-0.3 0.954 114.5 51.7 -56.6 -48.3 7.0 2.6 -9.5 52 176 A V H X S+ 0 0 4 -4,-3.4 4,-3.0 1,-0.2 5,-0.3 0.825 103.5 56.9 -57.6 -34.3 3.8 2.8 -7.4 53 177 A H H X S+ 0 0 112 -4,-1.2 4,-1.2 -5,-0.3 -1,-0.2 0.907 113.4 39.5 -65.5 -44.0 2.0 0.5 -9.9 54 178 A D H X S+ 0 0 40 -4,-1.7 4,-2.8 -3,-0.3 5,-0.2 0.904 116.3 55.3 -62.3 -47.4 4.8 -2.2 -9.3 55 179 A a H X S+ 0 0 1 -4,-3.0 4,-2.4 1,-0.2 -17,-0.6 0.932 111.1 38.6 -56.0 -60.1 4.8 -1.3 -5.6 56 180 A V H X S+ 0 0 11 -4,-3.0 4,-2.5 1,-0.2 5,-0.2 0.829 115.0 58.1 -65.4 -33.3 1.1 -1.8 -4.8 57 181 A N H X S+ 0 0 62 -4,-1.2 4,-3.3 -5,-0.3 -2,-0.2 0.979 110.7 38.1 -57.1 -62.6 1.1 -4.8 -7.1 58 182 A I H X S+ 0 0 5 -4,-2.8 4,-2.8 2,-0.2 5,-0.3 0.916 116.6 54.9 -64.9 -38.5 3.8 -6.8 -5.2 59 183 A T H X S+ 0 0 2 -4,-2.4 4,-1.9 -21,-0.5 -1,-0.2 0.958 116.7 34.6 -46.1 -66.3 2.4 -5.5 -1.8 60 184 A I H X S+ 0 0 16 -4,-2.5 4,-3.3 2,-0.2 5,-0.3 0.907 114.8 58.8 -66.1 -39.8 -1.1 -6.8 -2.5 61 185 A K H X S+ 0 0 106 -4,-3.3 4,-1.7 -5,-0.2 5,-0.2 0.934 112.3 39.3 -54.9 -51.6 0.2 -9.9 -4.4 62 186 A Q H X S+ 0 0 47 -4,-2.8 4,-2.4 -5,-0.2 -1,-0.2 0.872 121.3 44.3 -62.2 -39.7 2.2 -11.2 -1.5 63 187 A H H X>S+ 0 0 53 -4,-1.9 4,-2.9 -5,-0.3 5,-0.5 0.951 109.8 52.0 -78.4 -49.4 -0.4 -10.2 1.1 64 188 A T H X5S+ 0 0 20 -4,-3.3 4,-1.5 1,-0.2 -3,-0.2 0.913 118.0 40.2 -52.3 -52.7 -3.5 -11.5 -0.7 65 189 A V H X5S+ 0 0 93 -4,-1.7 4,-2.0 -5,-0.3 -2,-0.2 0.979 122.4 39.9 -54.6 -63.0 -1.8 -14.9 -1.2 66 190 A T H X5S+ 0 0 66 -4,-2.4 4,-2.3 -5,-0.2 3,-0.2 0.948 116.0 47.5 -62.4 -57.3 -0.2 -15.1 2.3 67 191 A T H X>S+ 0 0 11 -4,-2.9 5,-3.0 1,-0.2 4,-1.4 0.845 109.4 56.5 -52.4 -38.7 -3.1 -13.6 4.4 68 192 A T H >< - 0 0 51 -2,-0.1 4,-3.4 0, 0.0 5,-0.2 -0.870 42.4 -85.3-137.2 165.7 -13.1 -8.7 -1.6 76 200 A E H > S+ 0 0 170 -2,-0.3 4,-2.1 1,-0.2 -2,-0.0 0.730 133.5 53.2 -50.0 -22.1 -13.0 -6.2 -4.4 77 201 A T H > S+ 0 0 67 2,-0.2 4,-2.1 3,-0.1 -1,-0.2 0.960 109.4 42.3 -74.4 -57.5 -14.0 -3.8 -1.6 78 202 A D H > S+ 0 0 9 2,-0.2 4,-2.9 1,-0.2 -2,-0.2 0.872 116.4 53.7 -60.2 -36.6 -11.1 -4.7 0.8 79 203 A I H X S+ 0 0 35 -4,-3.4 4,-2.5 2,-0.2 5,-0.3 0.977 106.6 47.9 -55.9 -62.7 -8.9 -4.6 -2.4 80 204 A K H X S+ 0 0 127 -4,-2.1 4,-0.7 -5,-0.2 -2,-0.2 0.782 114.2 50.2 -60.5 -23.3 -10.1 -1.1 -3.3 81 205 A I H >X S+ 0 0 0 -4,-2.1 4,-1.9 2,-0.2 3,-1.5 0.996 116.8 38.0 -61.9 -69.7 -9.4 -0.2 0.4 82 206 A M H 3X S+ 0 0 4 -4,-2.9 4,-3.4 1,-0.3 5,-0.4 0.915 114.1 56.3 -44.3 -66.5 -5.9 -1.7 0.4 83 207 A E H 3X S+ 0 0 70 -4,-2.5 4,-1.0 1,-0.2 -1,-0.3 0.624 110.6 46.4 -35.4 -34.9 -5.2 -0.5 -3.2 84 208 A R H S+ 0 0 106 -4,-2.6 5,-1.9 1,-0.2 4,-1.0 0.878 114.5 47.2 -54.8 -39.0 14.5 12.2 -0.1 100 224 A A H <5S+ 0 0 50 -4,-1.9 -2,-0.2 3,-0.3 -1,-0.2 0.592 106.1 56.8 -78.5 -18.8 16.9 9.3 0.8 101 225 A Y H 45S+ 0 0 152 -4,-0.5 -2,-0.2 -3,-0.3 -3,-0.2 0.949 121.2 29.3 -71.2 -51.9 18.2 9.1 -2.8 102 226 A Y H <5S- 0 0 193 -4,-2.5 -2,-0.2 2,-0.0 -3,-0.2 0.753 110.4-141.4 -66.3 -27.2 19.2 12.8 -2.4 103 227 A D T <5 0 0 131 -4,-1.0 -3,-0.3 -5,-0.3 -4,-0.1 0.939 360.0 360.0 39.7 73.8 19.6 12.0 1.3 104 228 A G < 0 0 84 -5,-1.9 -4,-0.1 0, 0.0 -1,-0.1 -0.062 360.0 360.0 -88.2 360.0 18.2 15.2 2.9