==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=1-JUL-2012 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIGASE 04-JUL-11 3B1L . COMPND 2 MOLECULE: E3 UBIQUITIN-PROTEIN LIGASE PARKIN; . SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; . AUTHOR K.TOMOO,A.IKEMIYA,Y.AMAMI,Y.IN,T.ISHIDA . 76 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4869.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 51 67.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 5 6.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 16 21.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 9.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 11.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 10 13.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 X M 0 0 62 0, 0.0 16,-2.7 0, 0.0 2,-0.4 0.000 360.0 360.0 360.0 157.5 42.5 -56.7 -3.4 2 2 X I E -A 16 0A 35 14,-0.2 62,-2.9 12,-0.0 63,-0.4 -0.951 360.0-174.1-105.5 133.2 43.0 -57.4 0.3 3 3 X V E -A 15 0A 0 12,-2.2 12,-2.6 -2,-0.4 2,-0.4 -0.984 21.8-130.6-118.5 140.0 46.0 -59.4 1.2 4 4 X F E -Ab 14 66A 58 61,-3.2 63,-2.8 -2,-0.4 2,-0.6 -0.772 16.2-154.1 -94.9 136.8 46.4 -60.5 4.9 5 5 X V E -Ab 13 67A 0 8,-3.0 8,-2.4 -2,-0.4 2,-0.6 -0.929 8.4-170.0-116.5 112.1 49.8 -59.7 6.5 6 6 X R E + b 0 68A 75 61,-2.7 63,-2.7 -2,-0.6 2,-0.4 -0.897 12.7 166.2-104.3 113.8 50.9 -62.0 9.4 7 7 X F E S- b 0 69A 22 -2,-0.6 63,-0.1 4,-0.5 4,-0.1 -0.985 73.9 -24.9-128.2 121.7 53.9 -60.8 11.4 8 8 X N S S+ 0 0 143 61,-0.6 2,-0.3 -2,-0.4 -1,-0.1 0.913 118.2 98.7 47.3 47.1 54.8 -62.4 14.8 9 9 X S S S- 0 0 38 1,-0.1 -1,-0.2 -3,-0.0 -3,-0.0 -0.977 83.7-121.9-157.5 160.4 51.2 -63.3 15.2 10 10 X S S S+ 0 0 117 -2,-0.3 2,-0.3 -3,-0.1 -1,-0.1 0.582 99.2 45.2 -81.4 -14.6 48.7 -66.2 14.8 11 11 X Y S S- 0 0 166 -4,-0.1 -4,-0.5 -6,-0.1 2,-0.4 -0.939 75.3-127.0-136.8 154.8 46.8 -63.9 12.4 12 12 X G - 0 0 13 -2,-0.3 -6,-0.3 -6,-0.2 56,-0.1 -0.787 21.0-133.1 -99.9 136.2 47.2 -61.6 9.4 13 13 X F E -A 5 0A 46 -8,-2.4 -8,-3.0 -2,-0.4 2,-0.4 -0.595 32.2-103.1 -83.8 147.3 45.9 -58.0 9.2 14 14 X P E -A 4 0A 88 0, 0.0 2,-0.5 0, 0.0 -10,-0.2 -0.584 36.6-172.5 -81.7 132.7 44.1 -56.9 6.1 15 15 X V E -A 3 0A 17 -12,-2.6 -12,-2.2 -2,-0.4 2,-0.4 -0.980 21.1-134.5-126.8 124.3 46.0 -54.7 3.6 16 16 X E E +A 2 0A 138 -2,-0.5 2,-0.3 -14,-0.2 -14,-0.2 -0.667 40.7 160.4 -78.7 120.3 44.4 -53.1 0.6 17 17 X V - 0 0 8 -16,-2.7 2,-0.3 -2,-0.4 5,-0.0 -0.785 22.3-154.2-129.3 171.7 46.8 -53.6 -2.3 18 18 X D > - 0 0 89 -2,-0.3 3,-2.0 -16,-0.0 38,-0.4 -0.878 42.3 -80.5-138.0-174.7 46.5 -53.5 -6.1 19 19 X S T 3 S+ 0 0 56 1,-0.3 38,-2.2 -2,-0.3 39,-0.3 0.741 126.6 50.7 -56.5 -26.7 48.2 -55.0 -9.2 20 20 X D T 3 S+ 0 0 113 36,-0.2 -1,-0.3 35,-0.1 2,-0.2 0.439 80.3 115.6 -92.1 -0.1 51.0 -52.5 -9.0 21 21 X T < - 0 0 25 -3,-2.0 35,-1.8 1,-0.1 2,-0.2 -0.514 56.0-144.6 -73.4 132.1 51.9 -52.9 -5.2 22 22 X S B > -E 55 0B 20 33,-0.2 4,-2.0 -2,-0.2 33,-0.2 -0.564 20.9-116.7 -93.1 166.3 55.4 -54.3 -4.8 23 23 X I H > S+ 0 0 2 31,-2.1 4,-2.6 29,-0.6 5,-0.2 0.904 116.9 58.2 -69.3 -37.5 56.7 -56.7 -2.1 24 24 X L H > S+ 0 0 44 28,-2.2 4,-1.8 30,-0.3 -1,-0.2 0.934 104.6 48.3 -57.4 -46.6 58.9 -53.9 -0.9 25 25 X Q H > S+ 0 0 97 27,-0.3 4,-1.0 1,-0.2 -1,-0.2 0.887 109.7 54.1 -63.3 -40.6 55.9 -51.6 -0.2 26 26 X L H >X S+ 0 0 3 -4,-2.0 4,-1.0 1,-0.2 3,-0.7 0.938 108.1 48.6 -55.9 -50.6 54.2 -54.5 1.6 27 27 X K H 3X S+ 0 0 11 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.832 103.9 61.7 -53.0 -37.1 57.3 -54.9 3.9 28 28 X E H 3X S+ 0 0 90 -4,-1.8 4,-2.2 1,-0.2 -1,-0.2 0.822 95.5 60.7 -68.9 -26.4 57.3 -51.2 4.6 29 29 X V H S+ 0 0 15 -4,-2.6 4,-1.3 1,-0.2 5,-0.9 0.886 110.6 42.5 -57.0 -42.8 58.4 -51.9 9.0 32 32 X K H <5S+ 0 0 143 -4,-2.2 -1,-0.2 1,-0.2 -2,-0.2 0.883 116.3 48.2 -79.2 -36.8 56.6 -48.8 10.0 33 33 X Q H <5S+ 0 0 92 -4,-1.7 -2,-0.2 -5,-0.2 -1,-0.2 0.840 123.9 30.4 -60.9 -39.9 54.2 -50.7 12.3 34 34 X Q H <5S- 0 0 85 -4,-2.5 -2,-0.2 2,-0.2 -1,-0.2 0.502 101.2-122.1-107.6 -6.9 56.9 -52.6 14.2 35 35 X G T <5 + 0 0 69 -4,-1.3 -3,-0.2 1,-0.3 -4,-0.1 0.830 68.9 132.5 62.3 31.1 59.8 -50.2 13.9 36 36 X V < - 0 0 21 -5,-0.9 -1,-0.3 -6,-0.3 -2,-0.2 -0.915 64.3-106.7-103.8 134.2 62.0 -52.9 12.1 37 37 X P > - 0 0 68 0, 0.0 3,-2.1 0, 0.0 4,-0.0 -0.398 22.0-126.1 -62.5 144.4 63.9 -51.9 9.0 38 38 X A G > S+ 0 0 22 1,-0.3 3,-1.9 2,-0.2 -9,-0.0 0.835 108.8 64.5 -57.0 -32.7 62.4 -53.2 5.8 39 39 X D G 3 S+ 0 0 121 1,-0.3 -1,-0.3 3,-0.0 -15,-0.0 0.581 98.9 56.4 -73.4 -5.7 65.8 -54.8 4.8 40 40 X Q G < S+ 0 0 62 -3,-2.1 32,-2.6 31,-0.0 2,-0.3 0.229 97.2 83.7-100.2 18.2 65.3 -57.0 7.9 41 41 X L E < -C 71 0A 0 -3,-1.9 2,-0.3 30,-0.2 30,-0.2 -0.881 55.7-167.3-122.0 152.4 62.0 -58.3 6.7 42 42 X R E -C 70 0A 78 28,-2.4 28,-2.2 -2,-0.3 2,-0.6 -0.994 15.5-138.2-136.0 145.4 61.0 -61.1 4.3 43 43 X V E -CD 69 50A 0 7,-0.6 7,-2.5 -2,-0.3 2,-0.5 -0.885 17.4-169.4-106.5 118.8 57.7 -62.0 2.6 44 44 X I E +CD 68 49A 46 24,-3.2 24,-2.8 -2,-0.6 2,-0.5 -0.935 8.5 176.2-110.6 121.8 56.7 -65.7 2.5 45 45 X F E > - D 0 48A 22 3,-3.2 3,-1.3 -2,-0.5 22,-0.1 -0.958 65.6 -28.3-127.5 115.8 53.8 -66.6 0.3 46 46 X A T 3 S- 0 0 72 -2,-0.5 -1,-0.1 20,-0.4 3,-0.1 0.924 127.3 -45.3 49.2 49.8 52.5 -70.2 -0.3 47 47 X G T 3 S+ 0 0 77 1,-0.2 2,-0.4 -3,-0.0 -1,-0.3 0.624 119.1 106.1 61.4 25.0 56.1 -71.6 0.1 48 48 X K E < -D 45 0A 87 -3,-1.3 -3,-3.2 2,-0.0 2,-0.8 -0.998 64.4-141.3-126.7 124.3 57.9 -68.9 -2.0 49 49 X E E -D 44 0A 108 -2,-0.4 -5,-0.2 -5,-0.2 -3,-0.0 -0.845 28.8-144.5 -80.1 116.4 59.9 -66.2 -0.5 50 50 X L E -D 43 0A 10 -7,-2.5 -7,-0.6 -2,-0.8 2,-0.1 -0.686 8.9-128.2 -90.3 125.8 59.0 -63.2 -2.7 51 51 X P > - 0 0 81 0, 0.0 3,-1.5 0, 0.0 -28,-0.4 -0.374 26.5-102.8 -76.5 157.2 61.7 -60.6 -3.6 52 52 X N T 3 S+ 0 0 54 1,-0.2 -28,-2.2 -29,-0.2 -29,-0.6 0.731 113.1 51.9 -43.1 -42.9 61.3 -56.8 -3.1 53 53 X H T 3 S+ 0 0 161 -30,-0.2 -1,-0.2 -31,-0.2 2,-0.1 0.618 80.5 105.8 -87.2 -7.2 60.7 -55.9 -6.8 54 54 X L < - 0 0 55 -3,-1.5 -31,-2.1 -32,-0.1 -30,-0.3 -0.424 57.8-151.0 -68.1 138.3 57.9 -58.3 -7.6 55 55 X T B > -E 22 0B 25 -33,-0.2 3,-0.9 -2,-0.1 -33,-0.2 -0.672 28.9-103.7-102.6 165.2 54.5 -56.7 -7.9 56 56 X V G > S+ 0 0 7 -35,-1.8 3,-1.5 -38,-0.4 5,-0.3 0.894 121.1 52.1 -54.1 -44.8 51.2 -58.3 -7.2 57 57 X Q G 3 S+ 0 0 122 -38,-2.2 -1,-0.2 1,-0.3 -37,-0.1 0.725 108.8 53.4 -67.8 -18.9 50.4 -58.8 -11.0 58 58 X N G < S+ 0 0 112 -3,-0.9 2,-0.3 -39,-0.3 -1,-0.3 0.053 111.0 44.0-105.0 14.0 53.7 -60.5 -11.5 59 59 X C S < S- 0 0 24 -3,-1.5 -9,-0.0 2,-0.2 0, 0.0 -0.894 96.0 -90.7-144.3-173.1 53.4 -63.1 -8.8 60 60 X D S S+ 0 0 111 -2,-0.3 2,-0.1 -15,-0.1 -4,-0.1 0.353 76.5 124.7 -86.1 7.2 50.8 -65.5 -7.5 61 61 X L + 0 0 10 -5,-0.3 2,-0.2 -6,-0.2 -2,-0.2 -0.426 34.6 163.8 -65.7 142.2 49.3 -63.2 -4.9 62 62 X E > - 0 0 131 -2,-0.1 3,-2.0 1,-0.1 2,-0.1 -0.729 45.1 -38.6-142.9-175.6 45.5 -62.8 -5.3 63 63 X Q T 3 S+ 0 0 93 1,-0.3 -60,-0.2 -2,-0.2 -1,-0.1 -0.390 126.0 1.2 -52.6 125.5 42.4 -61.6 -3.5 64 64 X Q T 3 S+ 0 0 105 -62,-2.9 -1,-0.3 1,-0.2 -61,-0.2 0.557 87.1 156.4 69.6 14.7 42.6 -62.7 0.2 65 65 X S < - 0 0 13 -3,-2.0 -61,-3.2 -63,-0.4 2,-0.4 -0.333 34.7-138.6 -55.5 149.8 46.0 -64.3 -0.0 66 66 X I E -b 4 0A 87 -63,-0.2 -20,-0.4 -61,-0.0 2,-0.3 -0.971 17.1-167.2-114.2 132.7 47.8 -64.5 3.3 67 67 X V E -b 5 0A 1 -63,-2.8 -61,-2.7 -2,-0.4 2,-0.6 -0.904 15.8-138.4-115.1 150.1 51.6 -63.8 3.5 68 68 X H E -bC 6 44A 57 -24,-2.8 -24,-3.2 -2,-0.3 2,-0.6 -0.941 15.4-158.6-106.4 114.0 53.9 -64.5 6.5 69 69 X I E -bC 7 43A 1 -63,-2.7 -61,-0.6 -2,-0.6 2,-0.3 -0.908 17.2-177.7 -96.4 123.9 56.3 -61.6 7.1 70 70 X V E - C 0 42A 19 -28,-2.2 -28,-2.4 -2,-0.6 2,-0.4 -0.844 23.7-116.0-120.5 161.5 59.4 -62.8 9.1 71 71 X Q E - C 0 41A 54 -2,-0.3 -30,-0.2 -30,-0.2 3,-0.1 -0.753 24.0-141.5-100.4 134.0 62.5 -61.1 10.4 72 72 X R S S+ 0 0 89 -32,-2.6 2,-0.1 -2,-0.4 3,-0.0 -0.940 85.2 30.8-138.7 123.1 66.1 -61.8 9.3 73 73 X P S S+ 0 0 103 0, 0.0 2,-0.3 0, 0.0 -1,-0.3 0.523 86.9 148.9 -74.7 154.9 68.4 -61.9 11.3 74 74 X R - 0 0 110 -2,-0.1 2,-0.2 -3,-0.1 -4,-0.0 -0.932 51.6-106.2-152.4 145.7 66.5 -63.1 14.3 75 75 X R 0 0 213 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.403 360.0 360.0 -61.7 125.5 67.4 -65.1 17.3 76 76 X R 0 0 216 -2,-0.2 -1,-0.1 0, 0.0 0, 0.0 0.968 360.0 360.0 -77.3 360.0 65.9 -68.6 17.0