==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER REPLICATION 18-SEP-05 2B29 . COMPND 2 MOLECULE: REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR E.BOCHKAREVA,L.KAUSTOV,A.AYED,A.OKOROKOV,J.MILNER, . 118 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6789.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 81 68.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 7 5.9 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 33 28.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 0.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 16 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 9 7.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 1 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 3 A G 0 0 72 0, 0.0 2,-0.2 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-179.3 23.7 -1.9 0.3 2 4 A Q - 0 0 177 1,-0.1 20,-0.2 3,-0.0 2,-0.0 -0.498 360.0-103.2 -68.3 139.1 25.2 -3.9 3.2 3 5 A L - 0 0 23 -2,-0.2 2,-1.9 1,-0.1 20,-0.2 -0.348 29.6-116.0 -72.1 144.2 27.6 -1.9 5.3 4 6 A S > - 0 0 39 18,-2.6 3,-2.7 41,-0.2 4,-0.3 -0.463 33.7-158.7 -81.4 70.6 31.3 -2.6 4.8 5 7 A E T 3 S+ 0 0 129 -2,-1.9 42,-0.1 1,-0.3 18,-0.0 -0.252 77.8 23.1 -54.6 131.5 32.3 -4.0 8.2 6 8 A G T 3> S+ 0 0 26 43,-0.0 4,-2.1 3,-0.0 -1,-0.3 0.310 88.6 111.3 91.9 -5.5 36.0 -3.7 8.8 7 9 A A H <> S+ 0 0 7 -3,-2.7 4,-3.1 2,-0.2 5,-0.2 0.908 77.0 52.2 -61.7 -45.3 36.4 -0.9 6.2 8 10 A I H > S+ 0 0 0 -4,-0.3 4,-3.0 1,-0.2 5,-0.3 0.960 111.7 47.7 -56.3 -46.1 37.2 1.6 9.0 9 11 A A H >>S+ 0 0 22 2,-0.2 4,-2.9 1,-0.2 5,-0.6 0.895 110.3 51.5 -57.4 -42.7 39.9 -0.8 10.2 10 12 A A H X>S+ 0 0 20 -4,-2.1 6,-1.6 1,-0.2 4,-1.6 0.943 113.6 45.6 -63.8 -47.3 41.2 -1.2 6.7 11 13 A I H X5S+ 0 0 5 -4,-3.1 4,-0.5 4,-0.2 -2,-0.2 0.937 121.3 35.4 -57.9 -54.4 41.5 2.5 6.3 12 14 A M H <5S+ 0 0 6 -4,-3.0 -2,-0.2 -5,-0.2 -1,-0.2 0.798 130.4 28.1 -73.0 -35.7 43.1 3.3 9.7 13 15 A Q H <5S+ 0 0 135 -4,-2.9 -3,-0.2 -5,-0.3 -2,-0.2 0.867 123.9 36.4 -98.3 -45.4 45.3 0.1 10.1 14 16 A K H < - 0 0 95 3,-0.5 3,-1.7 -2,-0.2 -2,-0.0 -0.932 39.2 -85.5-166.4 150.0 34.3 30.3 9.6 34 36 A G T 3 S+ 0 0 81 -2,-0.3 -1,-0.1 1,-0.3 -2,-0.0 0.613 109.3 4.0 -20.4 -87.9 34.4 33.8 8.2 35 37 A N T 3 S+ 0 0 178 2,-0.0 -1,-0.3 0, 0.0 0, 0.0 0.188 113.8 100.5 -92.2 17.8 34.6 34.1 4.4 36 38 A S S < S- 0 0 64 -3,-1.7 -3,-0.5 1,-0.0 3,-0.1 -0.731 75.9-117.9-114.7 147.5 34.4 30.4 4.0 37 39 A P - 0 0 66 0, 0.0 -2,-0.0 0, 0.0 21,-0.0 -0.435 59.9 -90.3 -62.6 156.2 31.7 27.6 3.0 38 40 A P - 0 0 27 0, 0.0 2,-0.5 0, 0.0 -6,-0.2 -0.276 30.6-129.9 -65.4 161.3 31.5 25.4 6.1 39 41 A R E -B 31 0A 103 -8,-2.1 -8,-2.0 -3,-0.1 2,-0.4 -0.982 27.3-141.6-100.3 122.5 33.8 22.3 6.5 40 42 A Y E -B 30 0A 31 -2,-0.5 16,-2.4 16,-0.4 2,-0.4 -0.718 12.5-160.4 -91.2 135.7 31.5 19.4 7.3 41 43 A R E -BC 29 55A 49 -12,-3.0 -12,-2.5 -2,-0.4 2,-0.4 -0.910 11.0-160.0-109.0 142.9 32.7 16.8 9.8 42 44 A L E -BC 28 54A 0 12,-2.4 12,-1.6 -2,-0.4 2,-0.5 -0.954 21.4-150.7-132.3 140.9 31.1 13.4 9.9 43 45 A L E -B 27 0A 48 -16,-2.1 -17,-3.4 -2,-0.4 -16,-1.7 -0.955 35.5-172.7-101.4 119.4 30.8 10.6 12.3 44 46 A M E -BC 25 51A 0 7,-2.5 7,-2.1 -2,-0.5 2,-0.4 -0.859 16.2-151.7-120.9 155.3 30.4 7.4 10.1 45 47 A S E -BC 24 50A 0 -21,-2.5 -21,-2.4 -2,-0.3 5,-0.2 -0.974 15.2-169.2-125.1 141.0 29.7 3.7 10.7 46 48 A D - 0 0 0 3,-2.4 -39,-0.2 -2,-0.4 4,-0.1 0.245 63.0 -99.9-107.5 12.5 30.8 0.7 8.7 47 49 A G S S+ 0 0 10 2,-0.5 65,-0.5 63,-0.1 3,-0.1 -0.009 120.6 52.1 95.8 -26.3 28.4 -1.5 10.7 48 50 A L S S+ 0 0 80 1,-0.3 66,-2.9 65,-0.1 2,-0.3 0.792 117.4 16.4 -99.1 -49.8 31.2 -2.7 13.0 49 51 A N E - d 0 114A 22 64,-0.3 -3,-2.4 2,-0.0 -2,-0.5 -0.880 59.7-142.9-123.6 153.4 32.8 0.5 14.1 50 52 A T E -Cd 45 115A 19 64,-1.5 66,-2.8 -2,-0.3 2,-0.3 -0.877 16.5-171.4-103.7 154.2 32.1 4.2 14.2 51 53 A L E -C 44 0A 17 -7,-2.1 -7,-2.5 -2,-0.3 3,-0.2 -0.985 13.0-163.2-146.2 134.7 34.9 6.8 13.6 52 54 A S E + 0 0 43 -2,-0.3 2,-0.3 -9,-0.2 -10,-0.1 0.451 70.0 87.5 -95.9 -5.6 34.4 10.6 14.2 53 55 A S E + 0 0 6 -12,-0.1 39,-2.6 -9,-0.1 2,-0.4 -0.042 55.6 121.3 -97.4 31.4 37.4 11.8 12.1 54 56 A F E -Ce 42 92A 1 -12,-1.6 -12,-2.4 -2,-0.3 2,-0.3 -0.750 36.5-174.3 -90.9 139.8 35.8 12.2 8.7 55 57 A M E -Ce 41 93A 29 37,-2.6 39,-2.8 -2,-0.4 2,-0.4 -0.968 20.7-123.1-129.5 156.7 35.7 15.5 6.9 56 58 A L E - e 0 94A 0 -16,-2.4 -16,-0.4 -2,-0.3 39,-0.2 -0.802 20.2-118.5-102.5 136.5 34.0 16.3 3.6 57 59 A A > - 0 0 9 37,-2.7 3,-2.2 -2,-0.4 4,-0.3 -0.399 30.3-119.3 -60.3 142.6 35.7 17.8 0.5 58 60 A T G > S+ 0 0 60 1,-0.3 3,-1.9 2,-0.2 -1,-0.1 0.819 111.0 69.3 -57.1 -29.5 34.1 21.2 -0.3 59 61 A Q G 3 S+ 0 0 163 1,-0.3 -1,-0.3 2,-0.1 4,-0.1 0.723 98.0 51.8 -57.1 -23.9 33.0 19.8 -3.7 60 62 A L G X> S+ 0 0 17 -3,-2.2 3,-1.2 34,-0.2 4,-0.8 0.470 79.8 99.3 -96.1 -1.9 30.5 17.6 -1.8 61 63 A N H X> S+ 0 0 3 -3,-1.9 4,-2.5 -4,-0.3 3,-1.4 0.868 73.7 62.1 -52.6 -44.9 29.0 20.5 0.2 62 64 A P H 3> S+ 0 0 69 0, 0.0 4,-2.2 0, 0.0 6,-0.3 0.839 95.9 59.9 -54.4 -29.6 26.0 20.9 -2.1 63 65 A L H <4>S+ 0 0 52 -3,-1.2 6,-2.2 2,-0.2 5,-1.4 0.816 110.7 41.8 -64.5 -32.9 24.9 17.3 -1.2 64 66 A V H X<5S+ 0 0 22 -3,-1.4 3,-1.8 -4,-0.8 -1,-0.2 0.898 114.1 50.7 -75.3 -49.9 24.6 18.4 2.4 65 67 A E H 3<5S+ 0 0 97 -4,-2.5 -2,-0.2 1,-0.3 -1,-0.1 0.805 112.0 48.0 -57.6 -33.1 23.0 21.8 1.5 66 68 A E T 3<5S- 0 0 128 -4,-2.2 -1,-0.3 -5,-0.2 -2,-0.1 0.138 116.1-114.7 -98.0 14.5 20.4 20.0 -0.7 67 69 A E T < 5S+ 0 0 155 -3,-1.8 -3,-0.2 2,-0.2 -4,-0.1 0.494 84.0 114.6 69.9 12.9 19.6 17.5 2.0 68 70 A Q S - 0 0 30 -2,-0.8 3,-2.5 -3,-0.1 -45,-0.3 -0.964 58.8 -63.1-146.7 164.4 22.2 13.7 6.0 71 73 A S T 3 S+ 0 0 42 -2,-0.3 -45,-0.2 1,-0.3 37,-0.2 -0.267 122.3 17.7 -57.6 122.7 22.5 12.0 9.4 72 74 A N T 3 S+ 0 0 34 -47,-3.2 -1,-0.3 1,-0.3 -46,-0.1 -0.027 92.2 126.6 98.4 -18.2 21.4 8.3 9.0 73 75 A C < - 0 0 0 -3,-2.5 -48,-2.8 -49,-0.1 2,-0.5 -0.180 57.0-126.7 -62.5 157.0 21.8 8.0 5.1 74 76 A V E +AF 24 101A 12 27,-2.4 26,-2.5 -50,-0.2 27,-1.7 -0.951 32.1 177.3-111.1 129.1 23.9 5.3 3.5 75 77 A C E -AF 23 99A 0 -52,-2.8 -52,-2.4 -2,-0.5 2,-0.5 -0.829 27.3-132.5-125.8 162.6 26.7 6.3 1.1 76 78 A Q E -AF 22 98A 49 22,-2.7 22,-2.2 -2,-0.3 2,-0.6 -0.987 23.7-138.3-113.5 128.5 29.4 4.5 -1.0 77 79 A I E + F 0 97A 2 -56,-2.7 20,-0.3 -2,-0.5 3,-0.1 -0.787 24.1 175.6 -89.1 124.1 32.8 6.2 -0.8 78 80 A H E + 0 0 58 18,-1.9 2,-0.3 -2,-0.6 19,-0.2 0.647 68.6 11.6 -98.3 -28.0 34.5 6.3 -4.1 79 81 A R E + F 0 96A 114 17,-1.9 16,-2.5 2,-0.0 17,-2.0 -0.930 65.4 160.5-154.4 138.2 37.6 8.3 -3.1 80 82 A F E - F 0 94A 8 -63,-0.3 2,-0.3 -2,-0.3 14,-0.2 -0.971 22.9-143.9-152.4 160.0 39.2 9.4 0.1 81 83 A I E - F 0 93A 62 12,-2.2 12,-2.6 -2,-0.3 2,-0.5 -0.941 10.6-147.4-121.1 144.9 42.5 10.6 1.6 82 84 A V E - F 0 92A 36 -2,-0.3 2,-0.4 10,-0.2 10,-0.2 -0.982 20.2-172.9-114.7 122.9 43.9 9.8 5.0 83 85 A N E - F 0 91A 82 8,-2.6 8,-2.5 -2,-0.5 2,-0.6 -0.894 19.9-139.5-111.7 143.1 46.0 12.6 6.6 84 86 A T E - F 0 90A 103 -2,-0.4 6,-0.2 6,-0.2 5,-0.1 -0.921 26.8-141.6 -99.4 119.7 48.1 12.5 9.8 85 87 A L - 0 0 65 4,-3.0 -1,-0.0 -2,-0.6 5,-0.0 0.028 22.2-110.3 -69.1-177.7 47.6 15.8 11.7 86 88 A K S S+ 0 0 215 1,-0.2 -1,-0.1 2,-0.1 -2,-0.0 0.946 123.5 57.8 -80.7 -53.3 50.4 17.6 13.6 87 89 A D S S- 0 0 146 1,-0.1 -1,-0.2 2,-0.0 3,-0.1 0.702 119.7-117.2 -21.4 -45.1 48.5 16.6 16.8 88 90 A G S S+ 0 0 43 1,-0.5 -1,-0.1 0, 0.0 -2,-0.1 0.055 74.3 131.1 105.8 -21.4 49.0 13.0 15.5 89 91 A R - 0 0 155 -5,-0.1 -4,-3.0 1,-0.1 -1,-0.5 -0.367 54.7-133.6 -61.5 140.1 45.2 12.4 15.2 90 92 A R E - F 0 84A 72 28,-0.3 2,-0.4 -6,-0.2 -6,-0.2 -0.751 20.7-164.3 -99.1 150.1 44.4 10.9 11.8 91 93 A V E - F 0 83A 2 -8,-2.5 -8,-2.6 -2,-0.3 2,-0.5 -0.971 12.2-144.8-136.7 146.6 41.6 12.2 9.6 92 94 A V E -eF 54 82A 0 -39,-2.6 -37,-2.6 -2,-0.4 2,-0.6 -0.972 12.3-157.1-115.4 125.3 39.9 10.8 6.6 93 95 A I E -eF 55 81A 21 -12,-2.6 -12,-2.2 -2,-0.5 2,-0.7 -0.891 11.6-141.2-107.1 120.8 38.8 13.3 4.0 94 96 A L E +eF 56 80A 1 -39,-2.8 -37,-2.7 -2,-0.6 -14,-0.2 -0.757 27.0 170.0 -82.3 115.1 35.9 12.1 1.7 95 97 A M E + 0 0 39 -16,-2.5 2,-0.3 -2,-0.7 -15,-0.2 0.783 63.8 16.1 -97.0 -40.0 36.6 13.2 -1.8 96 98 A E E S+ F 0 79A 86 -17,-2.0 -18,-1.9 2,-0.0 -17,-1.9 -0.993 70.3 149.9-138.5 137.0 34.0 11.4 -3.9 97 99 A L E - F 0 77A 21 -2,-0.3 2,-0.4 -20,-0.3 -20,-0.2 -0.972 29.3-143.3-156.7 163.4 30.9 9.6 -2.8 98 100 A E E - F 0 76A 94 -22,-2.2 -22,-2.7 -2,-0.3 2,-0.6 -0.996 24.5-124.3-130.7 140.6 27.4 8.6 -3.9 99 101 A V E - F 0 75A 40 -2,-0.4 -24,-0.3 -24,-0.2 3,-0.1 -0.758 26.1-178.4 -80.6 124.5 24.3 8.5 -1.6 100 102 A L E + 0 0 60 -26,-2.5 2,-0.3 -2,-0.6 -25,-0.2 0.805 69.2 10.9 -90.6 -37.3 22.9 4.9 -1.9 101 103 A K E S- F 0 74A 111 -27,-1.7 -27,-2.4 -100,-0.0 -1,-0.3 -0.980 80.4-112.9-150.0 131.4 19.8 5.4 0.4 102 104 A S - 0 0 53 -2,-0.3 3,-0.4 -29,-0.2 4,-0.4 -0.115 29.8-112.8 -57.2 156.9 18.2 8.4 1.9 103 105 A A S > S+ 0 0 10 -35,-0.2 3,-0.7 1,-0.2 5,-0.2 0.772 117.0 59.1 -56.9 -28.8 18.2 9.1 5.7 104 106 A E T 3 S+ 0 0 150 1,-0.2 -1,-0.2 3,-0.1 -2,-0.0 0.837 87.0 70.2 -77.7 -36.2 14.4 8.5 5.6 105 107 A A T 3 S+ 0 0 47 -3,-0.4 2,-0.3 1,-0.1 -1,-0.2 0.619 109.4 36.6 -59.2 -14.9 14.6 5.0 4.2 106 108 A V S < S- 0 0 62 -3,-0.7 2,-0.8 -4,-0.4 -1,-0.1 -0.999 81.6-122.6-139.9 152.8 15.9 3.9 7.6 107 109 A G - 0 0 65 -2,-0.3 -3,-0.1 2,-0.1 -35,-0.1 -0.777 64.1 -55.3 -95.2 109.3 15.4 4.9 11.3 108 110 A V S S+ 0 0 102 -2,-0.8 -82,-0.0 -5,-0.2 0, 0.0 -0.017 104.5 2.8 59.7-161.8 18.4 6.1 13.2 109 111 A K - 0 0 94 1,-0.1 2,-0.4 -83,-0.1 -2,-0.1 -0.211 67.1-129.8 -59.9 137.6 21.6 4.1 13.5 110 112 A I - 0 0 61 -4,-0.1 -63,-0.1 -38,-0.0 -1,-0.1 -0.760 68.8 -29.7 -81.7 131.3 22.0 0.6 11.8 111 113 A G S S- 0 0 63 -2,-0.4 -63,-0.1 1,-0.2 -64,-0.0 -0.130 92.0 -67.0 63.4-154.9 23.2 -2.1 14.1 112 114 A N - 0 0 131 -65,-0.5 -1,-0.2 2,-0.0 -64,-0.0 -0.396 55.2-174.1-137.6 66.3 25.4 -1.4 17.1 113 115 A P - 0 0 7 0, 0.0 -64,-0.3 0, 0.0 -65,-0.1 -0.223 18.6-132.1 -57.2 146.8 28.9 -0.3 15.9 114 116 A V E -d 49 0A 83 -66,-2.9 -64,-1.5 1,-0.1 -66,-0.0 -0.799 29.4 -97.8-101.7 136.0 31.6 0.3 18.5 115 117 A P E -d 50 0A 85 0, 0.0 -64,-0.2 0, 0.0 2,-0.2 -0.239 43.2-124.8 -50.8 132.1 33.7 3.4 18.5 116 118 A Y - 0 0 33 -66,-2.8 2,-0.3 2,-0.0 -64,-0.1 -0.497 20.9-153.2 -77.2 155.3 37.0 2.7 16.8 117 119 A N 0 0 147 -2,-0.2 -66,-0.0 -66,-0.1 -1,-0.0 -0.855 360.0 360.0-141.5 107.0 40.4 3.4 18.5 118 120 A E 0 0 83 -2,-0.3 -28,-0.3 -28,-0.1 -2,-0.0 -0.814 360.0 360.0 175.0 360.0 43.8 4.2 16.9