==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER MEMBRANE PROTEIN 28-DEC-98 1B4R . COMPND 2 MOLECULE: PROTEIN (PKD1_HUMAN); . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.BYCROFT . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4443.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 58 72.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 34 42.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 17.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 1 0 2 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 8 A A 0 0 43 0, 0.0 21,-0.2 0, 0.0 2,-0.2 0.000 360.0 360.0 360.0 157.2 -4.3 9.7 -10.5 2 9 A T E -A 21 0A 72 19,-3.0 19,-1.5 1,-0.1 2,-1.2 -0.561 360.0-129.2 -81.5 144.7 -4.8 6.8 -13.0 3 10 A L E +A 20 0A 78 -2,-0.2 2,-1.0 17,-0.2 17,-0.2 -0.696 31.5 174.8 -94.3 86.7 -4.0 3.3 -11.7 4 11 A V E +A 19 0A 46 15,-1.8 15,-2.3 -2,-1.2 70,-0.0 -0.770 4.5 167.3 -94.9 102.4 -1.7 1.8 -14.3 5 12 A G - 0 0 23 -2,-1.0 13,-0.2 13,-0.3 2,-0.1 -0.633 11.4-177.7-116.9 76.7 -0.7 -1.6 -12.9 6 13 A P + 0 0 65 0, 0.0 11,-1.9 0, 0.0 2,-0.3 -0.375 20.6 126.7 -71.7 146.9 0.9 -3.4 -15.9 7 14 A H - 0 0 103 9,-0.2 3,-0.1 -2,-0.1 9,-0.1 -0.928 49.8-118.3 174.5 164.2 2.1 -7.0 -15.3 8 15 A G S S- 0 0 58 1,-0.3 2,-0.2 -2,-0.3 -1,-0.0 0.423 77.9 -19.4 -89.3-125.9 1.8 -10.5 -16.7 9 16 A P - 0 0 112 0, 0.0 2,-0.7 0, 0.0 -1,-0.3 -0.520 60.0-142.6 -80.1 147.1 0.3 -13.4 -14.7 10 17 A L + 0 0 24 67,-0.2 69,-2.1 -2,-0.2 2,-0.1 -0.667 35.3 159.4-114.2 80.1 0.3 -12.8 -10.9 11 18 A A B -c 79 0B 35 -2,-0.7 3,-0.4 67,-0.2 2,-0.3 -0.423 58.9 -64.9 -91.6 172.3 1.1 -16.2 -9.4 12 19 A S S S+ 0 0 50 67,-1.2 40,-0.2 1,-0.2 -1,-0.1 -0.390 128.2 24.2 -59.4 117.9 2.4 -16.7 -5.8 13 20 A G S S+ 0 0 43 38,-0.7 2,-0.3 -2,-0.3 39,-0.3 0.876 91.3 141.5 93.8 46.7 5.9 -15.1 -5.9 14 21 A Q E - B 0 51A 78 37,-1.9 37,-2.1 -3,-0.4 2,-0.8 -0.898 47.4-138.3-122.3 152.3 5.4 -12.6 -8.8 15 22 A L E - B 0 50A 89 -2,-0.3 35,-0.2 35,-0.2 2,-0.1 -0.808 22.2-169.5-110.0 94.6 6.7 -9.0 -9.2 16 23 A A E - B 0 49A 0 33,-2.1 33,-1.3 -2,-0.8 2,-0.5 -0.412 15.0-137.9 -75.7 158.9 3.9 -6.9 -10.8 17 24 A A E - B 0 48A 44 -11,-1.9 31,-0.3 31,-0.3 2,-0.2 -0.952 22.9-174.7-124.7 117.8 5.0 -3.4 -12.0 18 25 A F E - B 0 47A 8 29,-1.5 29,-2.5 -2,-0.5 2,-0.3 -0.600 8.7-179.7-105.6 171.0 2.7 -0.4 -11.3 19 26 A H E -AB 4 46A 66 -15,-2.3 -15,-1.8 27,-0.3 2,-0.3 -0.930 17.3-140.0-166.8 139.0 2.7 3.2 -12.3 20 27 A I E -A 3 0A 2 25,-2.2 2,-0.4 -2,-0.3 -17,-0.2 -0.768 11.7-157.1-105.3 152.5 0.3 6.2 -11.6 21 28 A A E +A 2 0A 41 -19,-1.5 -19,-3.0 -2,-0.3 -2,-0.0 -0.922 57.6 65.5-134.7 116.8 -0.7 8.9 -14.1 22 29 A A S S+ 0 0 60 -2,-0.4 2,-2.2 -21,-0.2 -1,-0.1 -0.064 79.9 67.5 176.6 -62.3 -2.0 12.4 -13.2 23 30 A P - 0 0 17 0, 0.0 41,-0.1 0, 0.0 45,-0.1 -0.428 70.0-163.3 -80.1 63.6 0.6 14.6 -11.5 24 31 A L S S+ 0 0 160 -2,-2.2 2,-2.1 1,-0.2 -2,-0.0 0.654 81.2 56.9 -13.1 -64.6 2.8 14.8 -14.6 25 32 A P S S+ 0 0 91 0, 0.0 2,-0.5 0, 0.0 -1,-0.2 -0.456 76.2 160.0 -77.7 72.5 5.8 16.1 -12.6 26 33 A V + 0 0 17 -2,-2.1 39,-0.2 1,-0.1 3,-0.1 -0.830 16.5 166.1 -98.8 127.3 6.0 13.2 -10.2 27 34 A T S S+ 0 0 108 37,-1.0 17,-1.7 -2,-0.5 2,-0.3 0.568 71.2 7.9-111.2 -14.9 9.4 12.7 -8.4 28 35 A A E -DE 43 64C 38 36,-0.9 36,-2.2 15,-0.3 -1,-0.4 -0.974 59.8-172.9-163.5 148.3 8.2 10.3 -5.7 29 36 A T E -DE 42 63C 3 13,-2.2 13,-2.3 -2,-0.3 2,-0.5 -0.941 18.8-137.3-140.4 162.7 5.0 8.3 -4.8 30 37 A R E -DE 41 62C 117 32,-2.7 32,-1.2 -2,-0.3 11,-0.2 -0.859 25.6-179.1-127.3 100.5 4.0 6.2 -1.8 31 38 A W E -DE 40 61C 0 9,-1.9 9,-1.8 -2,-0.5 2,-0.3 -0.306 17.9-144.3 -87.6 179.0 2.2 2.9 -2.7 32 39 A D E +DE 39 60C 31 28,-1.7 28,-0.8 7,-0.2 7,-0.2 -0.842 21.3 170.4-146.8 103.1 0.8 0.3 -0.3 33 40 A F - 0 0 5 5,-1.8 25,-0.6 4,-0.8 5,-0.2 0.967 19.8-159.1 -81.2 -59.1 1.1 -3.3 -1.2 34 41 A G + 0 0 53 3,-1.9 4,-0.2 4,-0.1 25,-0.1 0.576 58.8 115.7 89.3 8.5 0.1 -5.1 2.0 35 42 A D S S- 0 0 15 2,-0.7 17,-0.1 3,-0.1 3,-0.1 -0.146 114.4 -62.0 -98.5 35.7 1.8 -8.3 0.8 36 43 A G S S+ 0 0 78 15,-0.1 2,-0.9 16,-0.0 15,-0.1 -0.200 136.5 79.3 108.3 -38.3 4.3 -8.1 3.7 37 44 A S + 0 0 54 13,-0.2 -3,-1.9 1,-0.2 -4,-0.8 -0.810 59.0 168.5-101.9 95.1 5.5 -4.8 2.3 38 45 A A + 0 0 52 -2,-0.9 -5,-1.8 -5,-0.2 -1,-0.2 0.930 58.6 42.1 -71.2 -90.7 2.9 -2.3 3.4 39 46 A E E S-D 32 0C 105 -7,-0.2 2,-0.4 -6,-0.1 -7,-0.2 -0.192 74.2-157.1 -55.9 146.8 4.1 1.3 2.9 40 47 A V E -D 31 0C 12 -9,-1.8 -9,-1.9 -7,-0.1 2,-1.3 -0.868 12.0-163.6-135.0 106.4 5.9 1.7 -0.5 41 48 A D E +D 30 0C 143 -2,-0.4 -11,-0.2 -11,-0.2 2,-0.2 -0.682 28.9 171.2 -87.8 94.1 8.4 4.5 -1.1 42 49 A A E -D 29 0C 16 -13,-2.3 -13,-2.2 -2,-1.3 2,-0.3 -0.596 31.6-112.6-101.7 166.6 8.5 4.5 -4.9 43 50 A A E > S-D 28 0C 75 3,-0.4 3,-2.0 -15,-0.2 -15,-0.3 -0.702 72.3 -26.4 -97.6 150.1 10.2 7.0 -7.3 44 51 A G T 3 S- 0 0 12 -17,-1.7 2,-0.4 -2,-0.3 -17,-0.2 -0.023 118.7 -36.0 44.1-153.3 8.3 9.3 -9.7 45 52 A P T 3 S+ 0 0 44 0, 0.0 -25,-2.2 0, 0.0 2,-0.3 -0.202 119.1 87.6 -88.4 40.1 4.9 7.9 -10.7 46 53 A A E < +B 19 0A 47 -3,-2.0 -3,-0.4 -2,-0.4 -27,-0.3 -0.987 37.3 139.2-143.4 154.4 6.1 4.3 -10.8 47 54 A A E -B 18 0A 14 -29,-2.5 -29,-1.5 -2,-0.3 2,-0.3 -0.902 32.0-126.7-165.9-168.9 6.5 1.2 -8.5 48 55 A S E -B 17 0A 34 -31,-0.3 2,-0.5 -2,-0.3 -31,-0.3 -0.989 14.4-126.0-157.3 146.6 6.0 -2.5 -8.5 49 56 A H E -B 16 0A 0 -33,-1.3 -33,-2.1 -2,-0.3 2,-0.9 -0.818 10.3-157.3-100.1 133.8 4.2 -5.1 -6.3 50 57 A R E -B 15 0A 104 -2,-0.5 2,-0.4 -35,-0.2 -35,-0.2 -0.772 18.7-177.4-107.5 88.6 6.0 -8.1 -4.9 51 58 A Y E +B 14 0A 3 -37,-2.1 -37,-1.9 -2,-0.9 -38,-0.7 -0.702 15.8 162.0 -88.7 135.1 3.3 -10.7 -4.2 52 59 A V + 0 0 90 -2,-0.4 -1,-0.1 -39,-0.3 -40,-0.1 0.508 52.4 72.5-128.0 -12.9 4.4 -13.9 -2.6 53 60 A L S S- 0 0 110 -41,-0.1 2,-0.6 -42,-0.1 -40,-0.2 -0.865 80.8-117.3-110.2 144.6 1.2 -15.5 -1.1 54 61 A P S S+ 0 0 68 0, 0.0 2,-0.3 0, 0.0 25,-0.2 -0.639 79.8 58.4 -77.8 115.5 -1.6 -17.1 -3.1 55 62 A G E S- F 0 78C 28 23,-1.5 23,-1.8 -2,-0.6 2,-0.3 -0.954 91.6 -41.9 164.0-142.8 -4.8 -15.1 -2.6 56 63 A R E - F 0 77C 208 -2,-0.3 2,-0.3 21,-0.3 21,-0.3 -0.817 45.1-166.1-117.7 159.7 -6.0 -11.5 -3.1 57 64 A Y E - F 0 76C 34 19,-2.9 19,-2.3 -2,-0.3 2,-0.4 -0.956 12.1-138.3-140.7 160.8 -4.2 -8.2 -2.4 58 65 A H E - F 0 75C 122 -25,-0.6 2,-0.4 -2,-0.3 17,-0.2 -0.944 16.9-161.2-122.0 142.1 -5.1 -4.5 -2.1 59 66 A V E + F 0 74C 0 15,-3.0 15,-0.8 -2,-0.4 2,-0.3 -0.936 13.7 166.6-125.2 149.6 -3.1 -1.5 -3.5 60 67 A T E -EF 32 73C 40 -28,-0.8 -28,-1.7 -2,-0.4 2,-0.3 -0.971 11.2-164.0-150.3 160.6 -3.1 2.2 -2.8 61 68 A A E -EF 31 72C 2 11,-1.5 11,-3.0 -2,-0.3 2,-0.5 -1.000 13.3-152.2-151.8 153.7 -0.7 5.1 -3.6 62 69 A V E -EF 30 71C 50 -32,-1.2 -32,-2.7 -2,-0.3 2,-0.3 -0.984 19.2-145.3-126.0 122.0 0.1 8.7 -2.6 63 70 A L E -EF 29 70C 2 7,-2.0 7,-0.5 -2,-0.5 2,-0.5 -0.682 11.5-164.8 -88.4 141.5 1.6 11.0 -5.2 64 71 A A E +EF 28 69C 48 -36,-2.2 -37,-1.0 -2,-0.3 -36,-0.9 -0.893 27.2 153.8-130.7 109.1 4.1 13.6 -4.0 65 72 A L - 0 0 49 3,-2.6 4,-0.1 -2,-0.5 -1,-0.1 0.506 66.1-107.6-104.1 -11.0 5.0 16.5 -6.3 66 73 A G S S+ 0 0 81 2,-0.7 3,-0.1 1,-0.0 -40,-0.0 -0.337 113.5 29.2 111.7 -49.5 6.0 18.8 -3.4 67 74 A A S S+ 0 0 111 1,-0.1 2,-0.3 -2,-0.1 -3,-0.0 0.436 125.6 40.2-118.4 -5.6 3.0 21.0 -3.7 68 75 A G + 0 0 36 -45,-0.1 -3,-2.6 2,-0.0 -2,-0.7 -0.930 59.9 179.5-139.6 164.1 0.4 18.5 -5.1 69 76 A S E -F 64 0C 81 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.882 13.0-143.0-151.2-177.2 -0.5 14.8 -4.6 70 77 A A E -F 63 0C 12 -7,-0.5 -7,-2.0 -2,-0.3 2,-0.5 -0.993 14.1-128.6-153.2 154.8 -2.8 12.1 -5.7 71 78 A L E -F 62 0C 146 -2,-0.3 2,-0.3 -9,-0.2 -9,-0.2 -0.924 25.1-173.2-112.9 124.8 -4.7 9.1 -4.1 72 79 A L E +F 61 0C 10 -11,-3.0 -11,-1.5 -2,-0.5 2,-0.1 -0.826 12.6 169.1-114.5 155.2 -4.5 5.7 -5.7 73 80 A G E +F 60 0C 42 -2,-0.3 -13,-0.3 -13,-0.3 2,-0.2 -0.563 11.2 163.3-164.7 91.6 -6.3 2.5 -4.8 74 81 A T E -F 59 0C 18 -15,-0.8 -15,-3.0 -2,-0.1 2,-0.3 -0.555 27.4-128.6-106.9 175.8 -6.1 -0.6 -7.0 75 82 A D E -F 58 0C 111 -17,-0.2 2,-0.3 -2,-0.2 -17,-0.2 -0.841 17.3-161.8-122.1 160.3 -7.0 -4.3 -6.4 76 83 A V E -F 57 0C 7 -19,-2.3 -19,-2.9 -2,-0.3 2,-0.4 -0.998 10.9-167.6-144.2 147.5 -4.9 -7.5 -6.9 77 84 A Q E -F 56 0C 119 -2,-0.3 2,-0.4 -21,-0.3 -21,-0.3 -0.842 12.9-174.2-137.1 99.0 -5.6 -11.2 -7.2 78 85 A V E -F 55 0C 0 -23,-1.8 -23,-1.5 -2,-0.4 -67,-0.2 -0.757 3.9-172.4 -96.9 139.8 -2.6 -13.6 -7.1 79 86 A E B c 11 0B 118 -69,-2.1 -67,-1.2 -2,-0.4 -24,-0.1 -0.259 360.0 360.0-110.6-159.4 -3.0 -17.4 -7.7 80 87 A A 0 0 112 -69,-0.3 -69,-0.1 -26,-0.1 -2,-0.0 -0.243 360.0 360.0-149.4 360.0 -0.6 -20.3 -7.3