==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=7-JAN-2010 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 24-OCT-07 3B4D . COMPND 2 MOLECULE: POLYADENYLATE-BINDING PROTEIN 2; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.GE,S.TONG,M.TENG,L.NIU . 80 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4896.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 54 67.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 28.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 5 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 13 16.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 11 13.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 169 A A > 0 0 63 0, 0.0 3,-0.6 0, 0.0 51,-0.2 0.000 360.0 360.0 360.0 -44.1 35.1 3.6 5.3 2 170 A D G > + 0 0 99 1,-0.2 3,-1.2 2,-0.2 77,-0.4 0.814 360.0 58.1 -67.7 -30.2 37.6 6.4 5.0 3 171 A A G 3 S+ 0 0 63 1,-0.2 -1,-0.2 75,-0.1 55,-0.1 0.665 108.6 46.4 -70.4 -18.0 34.7 8.8 4.5 4 172 A R G < S+ 0 0 68 -3,-0.6 48,-2.9 54,-0.1 2,-0.3 0.246 104.3 91.9-104.0 12.8 33.4 7.5 7.9 5 173 A S E < -A 51 0A 3 -3,-1.2 74,-2.4 46,-0.2 2,-0.3 -0.785 53.7-158.3-117.1 149.6 36.8 7.9 9.6 6 174 A I E -AB 50 78A 0 44,-2.1 44,-2.0 -2,-0.3 2,-0.4 -0.916 18.2-131.8-117.5 150.8 38.8 10.4 11.5 7 175 A Y E -AB 49 77A 35 70,-2.9 70,-1.9 -2,-0.3 2,-0.5 -0.833 19.9-160.5 -90.8 136.1 42.5 10.7 12.1 8 176 A V E -AB 48 76A 0 40,-2.9 40,-2.2 -2,-0.4 3,-0.2 -0.974 10.2-159.6-121.8 110.2 43.4 11.3 15.8 9 177 A G E +AB 47 75A 2 66,-3.0 66,-1.3 -2,-0.5 38,-0.2 -0.580 63.2 36.7 -90.4 157.4 46.8 12.7 16.4 10 178 A N S S+ 0 0 70 36,-1.0 2,-0.4 1,-0.2 37,-0.2 0.940 70.5 155.6 72.6 50.0 49.0 12.6 19.6 11 179 A V - 0 0 1 35,-1.6 -1,-0.2 -3,-0.2 34,-0.1 -0.931 31.0-140.6-108.7 131.8 48.1 9.1 20.8 12 180 A D > - 0 0 17 -2,-0.4 3,-1.7 32,-0.1 28,-0.1 -0.358 24.3-104.0 -97.6 173.3 50.6 7.4 23.0 13 181 A Y T 3 S+ 0 0 99 1,-0.3 -1,-0.1 -2,-0.1 24,-0.1 0.483 118.0 59.2 -75.9 -4.1 51.9 3.8 23.3 14 182 A G T 3 S+ 0 0 32 56,-0.1 -1,-0.3 2,-0.1 2,-0.2 0.383 81.0 111.6 -99.4 -0.5 49.8 3.3 26.5 15 183 A A < - 0 0 14 -3,-1.7 2,-0.3 4,-0.0 -4,-0.0 -0.488 51.4-156.5 -73.6 144.3 46.4 4.1 24.8 16 184 A T > - 0 0 63 -2,-0.2 4,-2.0 1,-0.1 5,-0.1 -0.819 26.6-120.2-114.4 161.2 43.9 1.3 24.3 17 185 A A H > S+ 0 0 46 -2,-0.3 4,-3.0 2,-0.2 5,-0.2 0.857 114.8 56.6 -65.9 -34.5 41.0 0.9 21.8 18 186 A E H > S+ 0 0 139 2,-0.2 4,-2.4 1,-0.2 -1,-0.2 0.934 108.1 47.5 -62.9 -44.6 38.5 0.8 24.7 19 187 A E H > S+ 0 0 53 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.904 113.3 48.2 -61.1 -45.0 39.8 4.2 26.0 20 188 A L H X S+ 0 0 0 -4,-2.0 4,-1.7 2,-0.2 -2,-0.2 0.919 111.7 48.3 -62.2 -47.8 39.6 5.7 22.5 21 189 A E H X S+ 0 0 56 -4,-3.0 4,-1.2 1,-0.2 -2,-0.2 0.916 110.4 52.9 -57.3 -44.2 36.1 4.4 21.8 22 190 A A H < S+ 0 0 51 -4,-2.4 4,-0.4 1,-0.2 3,-0.3 0.874 107.0 52.5 -61.7 -36.3 35.0 5.7 25.2 23 191 A H H < S+ 0 0 49 -4,-1.8 -1,-0.2 1,-0.2 3,-0.2 0.874 121.0 32.0 -65.2 -36.6 36.4 9.2 24.3 24 192 A F H >X S+ 0 0 0 -4,-1.7 3,-2.3 -3,-0.2 4,-0.5 0.411 87.7 105.8-100.8 1.2 34.4 9.3 21.0 25 193 A H G >< S+ 0 0 118 -4,-1.2 3,-1.0 1,-0.3 -1,-0.2 0.815 75.9 56.6 -55.6 -39.0 31.3 7.3 22.2 26 194 A G G 34 S+ 0 0 80 -4,-0.4 -1,-0.3 1,-0.2 3,-0.1 0.624 97.8 64.2 -68.3 -14.3 29.1 10.3 22.4 27 195 A C G <4 S- 0 0 16 -3,-2.3 -1,-0.2 1,-0.3 2,-0.2 0.683 118.9 -72.8 -82.4 -20.0 29.8 11.2 18.8 28 196 A G << - 0 0 22 -3,-1.0 -1,-0.3 -4,-0.5 2,-0.1 -0.778 69.1 -37.1 145.1 167.8 28.1 8.0 17.4 29 197 A S - 0 0 70 -2,-0.2 24,-3.1 -3,-0.1 25,-0.5 -0.402 56.7-141.7 -59.4 128.9 28.5 4.3 17.0 30 198 A V E -C 52 0A 29 22,-0.3 22,-0.3 -2,-0.1 3,-0.1 -0.796 19.3-176.6 -99.0 134.1 32.1 3.2 16.3 31 199 A N E + 0 0 97 20,-3.6 2,-0.3 -2,-0.4 21,-0.2 0.857 68.0 0.5 -92.1 -47.3 33.0 0.4 13.9 32 200 A R E -C 51 0A 166 19,-1.5 19,-3.0 2,-0.0 2,-0.5 -0.997 51.3-156.6-146.9 142.2 36.7 0.1 14.2 33 201 A V E -C 50 0A 32 -2,-0.3 2,-0.5 17,-0.2 17,-0.2 -0.997 12.9-170.3-118.1 127.8 39.6 1.7 16.2 34 202 A T E -C 49 0A 54 15,-2.5 15,-2.5 -2,-0.5 2,-0.5 -0.987 2.6-165.6-113.5 124.1 43.1 1.4 14.7 35 203 A I E -C 48 0A 57 -2,-0.5 2,-0.5 13,-0.2 13,-0.2 -0.944 3.1-170.7-109.9 129.7 46.0 2.5 16.8 36 204 A L E -C 47 0A 60 11,-3.1 11,-2.2 -2,-0.5 2,-0.4 -0.970 6.7-180.0-123.6 115.6 49.4 3.1 15.1 37 205 A C E +C 46 0A 37 -2,-0.5 9,-0.2 9,-0.2 3,-0.1 -0.958 20.9 178.4-121.9 135.3 52.5 3.7 17.2 38 206 A D S S+ 0 0 100 7,-3.4 2,-0.3 -2,-0.4 8,-0.2 0.445 78.1 49.0-109.4 -7.9 56.1 4.3 16.1 39 207 A K - 0 0 80 6,-0.9 6,-0.4 3,-0.1 -1,-0.1 -0.988 54.9-176.6-131.6 143.3 57.6 4.7 19.6 40 208 A F S S+ 0 0 151 -2,-0.3 2,-0.3 1,-0.2 -1,-0.1 0.279 72.4 19.6-122.9 2.7 57.0 2.3 22.5 41 209 A S S S+ 0 0 82 2,-0.3 -1,-0.2 0, 0.0 2,-0.0 -0.954 107.4 20.2-162.3 166.8 58.8 4.1 25.3 42 210 A G S S+ 0 0 52 -2,-0.3 -3,-0.1 -3,-0.1 0, 0.0 -0.359 119.2 10.0 66.1-146.6 60.1 7.6 26.1 43 211 A H S S- 0 0 166 1,-0.1 -2,-0.3 -31,-0.1 2,-0.0 -0.504 90.3-125.0 -65.9 128.5 58.4 10.4 24.0 44 212 A P - 0 0 28 0, 0.0 2,-0.2 0, 0.0 -32,-0.1 -0.320 25.5-173.0 -75.5 162.3 55.5 8.9 22.2 45 213 A K + 0 0 132 -6,-0.4 -7,-3.4 -34,-0.1 -6,-0.9 -0.775 38.0 94.8-156.0 102.1 54.9 9.0 18.5 46 214 A G E - C 0 37A 13 -2,-0.2 -35,-1.6 -9,-0.2 -36,-1.0 -0.989 39.0-158.7-177.2 176.2 51.6 7.7 17.2 47 215 A F E -AC 9 36A 43 -11,-2.2 -11,-3.1 -2,-0.3 2,-0.3 -0.896 13.8-133.9-157.6 176.5 48.0 8.3 16.1 48 216 A A E -AC 8 35A 0 -40,-2.2 -40,-2.9 -2,-0.3 2,-0.4 -0.960 5.9-138.8-140.5 159.7 44.7 6.5 15.6 49 217 A Y E -AC 7 34A 54 -15,-2.5 -15,-2.5 -2,-0.3 2,-0.6 -0.984 14.4-162.3-113.8 130.2 41.9 6.0 13.1 50 218 A I E -AC 6 33A 0 -44,-2.0 -44,-2.1 -2,-0.4 2,-0.7 -0.973 4.8-160.1-110.8 120.6 38.3 5.9 14.4 51 219 A E E -AC 5 32A 35 -19,-3.0 -20,-3.6 -2,-0.6 -19,-1.5 -0.891 10.2-154.9-101.5 112.7 35.9 4.5 11.9 52 220 A F E - C 0 30A 0 -48,-2.9 -22,-0.3 -2,-0.7 -23,-0.1 -0.506 21.0-127.8 -81.9 153.2 32.3 5.4 12.7 53 221 A S S S+ 0 0 35 -24,-3.1 2,-0.4 -2,-0.2 -23,-0.1 0.854 97.3 39.2 -63.3 -36.9 29.2 3.4 11.7 54 222 A D S > S- 0 0 87 -25,-0.5 3,-1.5 -50,-0.1 4,-0.4 -0.945 77.3-133.3-123.2 137.8 27.6 6.5 10.1 55 223 A K T >> S+ 0 0 143 -2,-0.4 3,-1.4 1,-0.3 4,-0.6 0.783 101.8 68.9 -54.9 -33.7 29.3 9.3 8.1 56 224 A E H 3> S+ 0 0 150 1,-0.3 4,-1.4 2,-0.2 -1,-0.3 0.763 87.1 66.6 -61.9 -25.2 27.4 12.0 10.2 57 225 A S H <> S+ 0 0 5 -3,-1.5 4,-2.4 1,-0.2 -1,-0.3 0.761 89.0 67.5 -68.6 -25.3 29.5 11.1 13.3 58 226 A V H <> S+ 0 0 12 -3,-1.4 4,-0.9 -4,-0.4 -1,-0.2 0.963 102.2 43.2 -59.2 -54.2 32.6 12.4 11.6 59 227 A R H >< S+ 0 0 204 -4,-0.6 3,-0.9 1,-0.2 4,-0.4 0.914 114.5 52.1 -58.1 -45.2 31.5 16.1 11.6 60 228 A T H >< S+ 0 0 78 -4,-1.4 3,-1.4 1,-0.2 -1,-0.2 0.889 104.7 55.4 -55.1 -45.0 30.2 15.6 15.2 61 229 A S H >< S+ 0 0 0 -4,-2.4 3,-2.2 1,-0.3 -1,-0.2 0.686 87.2 79.9 -66.9 -19.4 33.6 14.2 16.4 62 230 A L G X< S+ 0 0 58 -4,-0.9 3,-1.6 -3,-0.9 -1,-0.3 0.754 79.0 70.1 -60.9 -24.6 35.4 17.4 15.1 63 231 A A G < S+ 0 0 90 -3,-1.4 -1,-0.3 -4,-0.4 -2,-0.2 0.724 89.0 64.9 -62.6 -22.1 34.3 19.2 18.2 64 232 A L G X S+ 0 0 45 -3,-2.2 3,-2.0 -4,-0.2 10,-0.3 0.454 70.7 121.5 -85.4 0.8 36.7 16.9 20.1 65 233 A D T < S+ 0 0 60 -3,-1.6 10,-0.2 1,-0.3 3,-0.1 -0.442 82.7 16.2 -58.5 136.6 39.7 18.4 18.4 66 234 A E T 3 S+ 0 0 124 8,-3.1 -1,-0.3 1,-0.2 9,-0.1 0.328 95.5 140.5 72.8 -3.0 42.0 19.8 21.1 67 235 A S < - 0 0 25 -3,-2.0 7,-2.4 7,-0.2 2,-0.5 -0.230 60.3-105.4 -62.1 155.6 40.2 17.8 23.8 68 236 A L E +D 73 0B 119 5,-0.2 2,-0.4 -3,-0.1 5,-0.2 -0.775 42.7 172.5 -86.7 125.0 42.3 16.2 26.5 69 237 A F E > S-D 72 0B 12 3,-2.8 3,-1.5 -2,-0.5 -49,-0.0 -0.988 73.3 -11.1-134.6 124.1 42.8 12.5 26.1 70 238 A R T 3 S- 0 0 102 -2,-0.4 3,-0.1 1,-0.3 -1,-0.1 0.863 132.0 -52.4 50.8 40.9 45.2 10.6 28.4 71 239 A G T 3 S+ 0 0 72 1,-0.2 2,-0.3 0, 0.0 -1,-0.3 0.546 122.1 86.2 79.0 8.2 46.6 14.0 29.7 72 240 A R E < S-D 69 0B 82 -3,-1.5 -3,-2.8 -62,-0.1 2,-0.4 -0.974 81.4-101.9-139.0 156.7 47.3 15.5 26.3 73 241 A Q E -D 68 0B 115 -2,-0.3 2,-0.3 -5,-0.2 -5,-0.2 -0.604 37.4-148.6 -77.3 127.1 45.5 17.5 23.6 74 242 A I - 0 0 3 -7,-2.4 -8,-3.1 -2,-0.4 2,-0.5 -0.687 6.9-133.0 -94.0 150.0 44.5 15.3 20.6 75 243 A K E -B 9 0A 106 -66,-1.3 -66,-3.0 -2,-0.3 2,-0.5 -0.922 22.8-168.5 -99.2 124.3 44.2 16.5 17.0 76 244 A V E +B 8 0A 6 -2,-0.5 -68,-0.2 -68,-0.2 -11,-0.1 -0.980 19.5 146.3-120.7 120.3 41.0 15.4 15.3 77 245 A I E -B 7 0A 45 -70,-1.9 -70,-2.9 -2,-0.5 3,-0.1 -0.968 56.0 -84.8-140.8 156.6 40.5 15.8 11.5 78 246 A P E -B 6 0A 67 0, 0.0 -72,-0.3 0, 0.0 -75,-0.1 -0.375 66.1 -86.7 -56.9 140.4 38.6 13.8 8.8 79 247 A K 0 0 60 -74,-2.4 -74,-0.1 -77,-0.4 -30,-0.0 -0.348 360.0 360.0 -56.0 124.1 40.9 10.9 7.6 80 248 A R 0 0 194 -3,-0.1 -1,-0.2 -2,-0.1 -78,-0.0 0.719 360.0 360.0 -65.6 360.0 43.0 12.5 4.8