==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN 19-JAN-99 1B6W . COMPND 2 MOLECULE: PROTEIN (HISTONE HMFB); . SOURCE 2 ORGANISM_SCIENTIFIC: METHANOTHERMUS FERVIDUS; . AUTHOR K.DECANNIERE,K.SANDMAN,J.N.REEVE,U.HEINEMANN . 68 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5639.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 72.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 61.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A X 0 0 113 0, 0.0 29,-0.1 0, 0.0 28,-0.0 0.000 360.0 360.0 360.0 133.4 6.9 29.2 12.8 2 2 A E + 0 0 170 2,-0.1 0, 0.0 0, 0.0 0, 0.0 0.770 360.0 82.7 -89.9 -31.7 7.9 30.3 16.3 3 3 A L S S- 0 0 69 26,-0.2 2,-0.2 1,-0.1 30,-0.1 -0.656 75.3-134.7 -78.7 131.9 11.6 29.7 16.0 4 4 A P > - 0 0 82 0, 0.0 4,-0.6 0, 0.0 -2,-0.1 -0.486 12.9-133.0 -76.6 145.9 13.7 32.5 14.5 5 5 A I H > S+ 0 0 64 -2,-0.2 4,-1.9 1,-0.2 3,-0.2 0.762 89.6 66.9 -72.6 -32.9 16.2 31.4 11.9 6 6 A A H > S+ 0 0 61 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.905 99.8 50.6 -67.5 -41.5 19.5 33.3 12.8 7 7 A P H > S+ 0 0 43 0, 0.0 4,-1.3 0, 0.0 -1,-0.2 0.866 108.5 54.7 -58.9 -36.3 20.1 31.4 16.1 8 8 A I H X S+ 0 0 10 -4,-0.6 4,-1.7 -3,-0.2 3,-0.4 0.917 106.2 50.7 -66.7 -40.8 19.6 28.1 14.2 9 9 A G H X S+ 0 0 1 -4,-1.9 4,-2.2 1,-0.2 -1,-0.2 0.873 107.8 54.6 -59.8 -39.3 22.4 29.2 11.7 10 10 A R H X S+ 0 0 151 -4,-1.9 4,-2.3 2,-0.2 -1,-0.2 0.821 103.3 55.6 -66.3 -31.8 24.6 29.9 14.7 11 11 A I H X S+ 0 0 89 -4,-1.3 4,-1.5 -3,-0.4 -2,-0.2 0.942 109.3 46.0 -66.6 -39.6 24.1 26.4 16.0 12 12 A I H <>S+ 0 0 37 -4,-1.7 5,-1.8 1,-0.2 4,-0.3 0.946 113.6 48.9 -70.1 -41.6 25.3 24.9 12.7 13 13 A K H ><5S+ 0 0 75 -4,-2.2 3,-1.8 1,-0.2 -1,-0.2 0.919 106.8 55.9 -60.1 -42.8 28.3 27.2 12.6 14 14 A D H 3<5S+ 0 0 140 -4,-2.3 -1,-0.2 1,-0.3 -2,-0.2 0.801 102.3 57.1 -63.2 -25.2 29.2 26.4 16.3 15 15 A A T 3<5S- 0 0 95 -4,-1.5 -1,-0.3 -3,-0.2 -2,-0.2 0.595 131.0 -95.2 -82.9 -4.9 29.3 22.7 15.3 16 16 A G T < 5 + 0 0 55 -3,-1.8 -3,-0.2 -4,-0.3 -2,-0.1 0.460 67.7 153.8 114.6 -1.8 32.0 23.7 12.7 17 17 A A < - 0 0 39 -5,-1.8 -1,-0.3 1,-0.2 3,-0.1 -0.395 32.8-153.3 -62.0 142.3 30.3 24.3 9.3 18 18 A E S S+ 0 0 177 1,-0.3 2,-0.3 -2,-0.0 -1,-0.2 0.846 78.7 11.0 -81.0 -38.5 32.2 26.7 7.1 19 19 A R - 0 0 214 2,-0.0 2,-0.4 -6,-0.0 -1,-0.3 -0.993 64.8-163.7-141.8 149.8 29.2 27.9 5.2 20 20 A V - 0 0 16 -2,-0.3 2,-0.1 -3,-0.1 -11,-0.0 -0.992 13.0-141.5-136.4 127.7 25.4 27.4 5.6 21 21 A S > - 0 0 71 -2,-0.4 4,-1.6 1,-0.1 3,-0.4 -0.413 26.7-115.0 -81.6 161.0 22.7 28.0 3.1 22 22 A D H > S+ 0 0 115 1,-0.2 4,-2.4 2,-0.2 5,-0.2 0.887 114.8 59.5 -60.8 -38.1 19.3 29.6 4.0 23 23 A D H > S+ 0 0 112 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.853 104.0 49.7 -63.7 -34.3 17.5 26.4 3.2 24 24 A A H > S+ 0 0 41 -3,-0.4 4,-2.0 2,-0.2 5,-0.3 0.852 110.7 50.2 -70.4 -40.5 19.6 24.4 5.7 25 25 A R H X S+ 0 0 58 -4,-1.6 4,-2.1 2,-0.2 -2,-0.2 0.930 113.7 44.9 -58.2 -50.3 18.8 27.0 8.4 26 26 A I H X S+ 0 0 62 -4,-2.4 4,-2.2 1,-0.2 -2,-0.2 0.924 112.5 51.3 -61.4 -47.8 15.0 26.9 7.7 27 27 A T H X S+ 0 0 64 -4,-2.3 4,-1.9 -5,-0.2 -1,-0.2 0.897 111.4 45.4 -59.3 -48.5 14.9 23.1 7.5 28 28 A L H X S+ 0 0 52 -4,-2.0 4,-2.7 2,-0.2 5,-0.3 0.894 111.8 54.9 -64.0 -31.0 16.7 22.5 10.9 29 29 A A H X S+ 0 0 6 -4,-2.1 4,-2.1 -5,-0.3 -2,-0.2 0.939 109.2 47.1 -67.2 -41.1 14.4 25.3 12.4 30 30 A K H X S+ 0 0 137 -4,-2.2 4,-1.9 2,-0.2 -1,-0.2 0.915 112.4 48.7 -64.8 -41.7 11.3 23.4 11.2 31 31 A I H X S+ 0 0 78 -4,-1.9 4,-2.5 2,-0.2 5,-0.2 0.898 112.1 48.3 -69.6 -37.6 12.6 20.0 12.5 32 32 A L H X S+ 0 0 63 -4,-2.7 4,-2.8 1,-0.2 -1,-0.2 0.942 111.1 50.8 -67.0 -41.0 13.5 21.4 16.0 33 33 A E H X S+ 0 0 28 -4,-2.1 4,-2.0 -5,-0.3 -1,-0.2 0.926 110.6 49.0 -60.4 -44.9 10.1 23.1 16.2 34 34 A E H X S+ 0 0 103 -4,-1.9 4,-1.9 2,-0.2 -2,-0.2 0.922 113.1 46.5 -58.7 -50.7 8.3 19.8 15.3 35 35 A X H X S+ 0 0 95 -4,-2.5 4,-2.4 1,-0.2 5,-0.2 0.901 111.4 54.2 -57.3 -44.5 10.4 17.9 18.0 36 36 A G H X S+ 0 0 38 -4,-2.8 4,-2.4 -5,-0.2 -2,-0.2 0.880 108.8 47.2 -54.3 -45.5 9.6 20.7 20.5 37 37 A R H X S+ 0 0 143 -4,-2.0 4,-2.0 2,-0.2 -1,-0.2 0.864 110.9 50.7 -69.6 -41.9 5.8 20.4 19.9 38 38 A D H X S+ 0 0 119 -4,-1.9 4,-1.7 2,-0.2 -2,-0.2 0.904 114.0 44.8 -64.9 -42.1 5.8 16.6 20.3 39 39 A I H X S+ 0 0 46 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.925 113.9 49.7 -64.7 -41.8 7.8 16.9 23.6 40 40 A A H X S+ 0 0 41 -4,-2.4 4,-2.1 -5,-0.2 -1,-0.2 0.911 108.1 53.9 -64.0 -41.6 5.6 19.7 24.9 41 41 A S H X S+ 0 0 59 -4,-2.0 4,-1.3 2,-0.2 -1,-0.2 0.930 112.3 43.4 -64.0 -38.9 2.4 17.7 24.0 42 42 A E H X S+ 0 0 55 -4,-1.7 4,-2.1 1,-0.2 -2,-0.2 0.921 111.2 55.3 -70.6 -38.9 3.6 14.7 26.1 43 43 A A H X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 -2,-0.2 0.864 103.6 56.1 -61.6 -36.3 4.8 17.0 28.9 44 44 A I H X S+ 0 0 90 -4,-2.1 4,-1.7 2,-0.2 -1,-0.2 0.908 107.5 47.8 -61.3 -46.9 1.3 18.5 29.2 45 45 A K H X S+ 0 0 100 -4,-1.3 4,-1.9 2,-0.2 -2,-0.2 0.889 111.4 51.3 -62.9 -40.2 -0.2 15.1 29.7 46 46 A L H X S+ 0 0 19 -4,-2.1 4,-1.0 1,-0.2 -2,-0.2 0.911 108.7 49.9 -62.0 -45.9 2.4 14.3 32.3 47 47 A A H ><>S+ 0 0 2 -4,-2.6 5,-2.5 1,-0.2 3,-0.5 0.881 108.9 53.7 -59.8 -34.2 1.7 17.5 34.3 48 48 A R H ><5S+ 0 0 161 -4,-1.7 3,-1.9 1,-0.2 -1,-0.2 0.914 103.9 55.6 -66.4 -40.4 -2.0 16.7 34.2 49 49 A H H 3<5S+ 0 0 168 -4,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.715 106.3 51.8 -65.1 -23.7 -1.3 13.3 35.7 50 50 A A T <<5S- 0 0 59 -4,-1.0 -1,-0.3 -3,-0.5 -2,-0.2 0.257 122.8-103.6 -97.3 13.3 0.5 15.0 38.6 51 51 A G T < 5S+ 0 0 75 -3,-1.9 2,-0.3 1,-0.2 -3,-0.2 0.735 80.0 125.1 77.0 21.7 -2.5 17.3 39.3 52 52 A R < - 0 0 61 -5,-2.5 -1,-0.2 -6,-0.1 -2,-0.1 -0.870 49.2-170.0-120.8 153.3 -0.9 20.4 37.8 53 53 A K S S+ 0 0 209 -2,-0.3 2,-0.4 2,-0.0 -1,-0.1 0.515 75.6 84.6-103.5 -20.6 -1.7 23.0 35.1 54 54 A T S S- 0 0 100 -7,-0.1 2,-0.4 -6,-0.0 -2,-0.0 -0.758 77.0-136.4 -87.7 130.2 1.8 24.5 35.2 55 55 A I - 0 0 72 -2,-0.4 2,-0.2 4,-0.0 -11,-0.1 -0.712 28.7-170.0 -84.0 132.7 4.4 22.7 33.0 56 56 A K >> - 0 0 103 -2,-0.4 4,-1.3 -13,-0.2 3,-0.8 -0.733 38.5 -99.5-116.0 171.1 7.7 22.3 35.0 57 57 A A H 3> S+ 0 0 76 1,-0.3 4,-2.3 -2,-0.2 5,-0.2 0.829 120.3 59.6 -59.9 -34.2 11.2 21.2 34.1 58 58 A E H 3> S+ 0 0 117 1,-0.2 4,-2.5 2,-0.2 -1,-0.3 0.844 101.5 52.7 -66.4 -33.0 10.5 17.7 35.4 59 59 A D H <> S+ 0 0 5 -3,-0.8 4,-2.1 2,-0.2 -1,-0.2 0.863 111.4 46.7 -63.1 -42.3 7.6 17.1 32.9 60 60 A I H X S+ 0 0 67 -4,-1.3 4,-2.5 2,-0.2 5,-0.2 0.934 112.8 49.5 -63.6 -46.8 9.9 18.1 30.0 61 61 A E H X S+ 0 0 116 -4,-2.3 4,-1.5 1,-0.2 -2,-0.2 0.932 113.8 45.1 -60.6 -48.6 12.7 15.8 31.2 62 62 A L H X S+ 0 0 72 -4,-2.5 4,-1.4 1,-0.2 -1,-0.2 0.876 111.5 53.4 -65.2 -37.4 10.3 12.9 31.7 63 63 A A H < S+ 0 0 3 -4,-2.1 -2,-0.2 2,-0.2 -1,-0.2 0.884 106.1 52.5 -63.4 -38.0 8.7 13.5 28.3 64 64 A V H >X S+ 0 0 55 -4,-2.5 3,-0.8 1,-0.2 4,-0.6 0.892 108.5 51.0 -66.6 -33.8 12.1 13.5 26.5 65 65 A R H 3< S+ 0 0 185 -4,-1.5 3,-0.4 1,-0.2 -1,-0.2 0.803 102.4 64.0 -68.1 -28.0 12.9 10.1 28.1 66 66 A R T 3< S+ 0 0 139 -4,-1.4 -1,-0.2 1,-0.2 -2,-0.1 -0.073 94.5 55.9 -88.9 29.7 9.5 8.9 26.9 67 67 A F T <4 0 0 79 -3,-0.8 -1,-0.2 1,-0.2 -2,-0.2 0.387 360.0 360.0-121.0 -25.5 10.4 9.2 23.2 68 68 A K < 0 0 219 -4,-0.6 -1,-0.2 -3,-0.4 -2,-0.0 -0.647 360.0 360.0 77.9 360.0 13.3 6.9 24.0