==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING PROTEIN 27-JAN-99 1B75 . COMPND 2 MOLECULE: PROTEIN (50S RIBOSOMAL PROTEIN L25); . SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; . AUTHOR M.STOLDT,J.WOEHNERT,M.GOERLACH,L.R.BROWN . 94 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6114.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 68.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 8 8.5 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 17 18.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 17 18.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 6.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 7.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 117 0, 0.0 60,-0.2 0, 0.0 59,-0.1 0.000 360.0 360.0 360.0 -63.4 -14.7 -2.2 9.5 2 2 A F - 0 0 45 58,-0.3 2,-0.5 54,-0.2 60,-0.4 -0.125 360.0-121.1 -74.0 173.6 -11.2 -3.5 8.9 3 3 A T + 0 0 88 58,-0.1 2,-0.7 60,-0.1 60,-0.2 -0.774 31.7 178.0-121.3 80.8 -7.9 -1.8 10.1 4 4 A I E -a 63 0A 1 58,-2.0 60,-2.6 -2,-0.5 2,-0.2 -0.788 26.1-135.5 -85.3 115.5 -5.8 -1.1 6.9 5 5 A N E +a 64 0A 81 -2,-0.7 38,-0.5 58,-0.2 2,-0.3 -0.479 33.3 166.1 -72.9 141.9 -2.6 0.6 8.1 6 6 A A E -a 65 0A 15 58,-1.7 60,-1.5 -2,-0.2 2,-0.3 -0.980 19.8-165.1-155.2 158.7 -1.4 3.7 6.1 7 7 A E - 0 0 53 -2,-0.3 34,-2.6 34,-0.2 2,-2.4 -0.902 47.0 -85.7-141.4 161.4 1.0 6.7 6.3 8 8 A V S S- 0 0 95 -2,-0.3 32,-0.2 32,-0.2 3,-0.1 -0.366 85.8 -70.9 -75.0 64.9 1.3 10.0 4.4 9 9 A R S S+ 0 0 119 -2,-2.4 2,-0.3 1,-0.2 -1,-0.2 0.925 101.8 123.0 47.6 58.8 3.4 8.4 1.5 10 10 A K - 0 0 66 6,-0.2 -1,-0.2 7,-0.1 2,-0.2 -0.979 42.7-158.2-150.8 133.2 6.5 8.0 3.7 11 11 A E - 0 0 7 -2,-0.3 2,-1.1 -3,-0.1 4,-0.0 -0.487 44.8 -65.6-108.9 175.7 8.5 4.8 4.5 12 12 A Q S S+ 0 0 105 -2,-0.2 2,-0.3 2,-0.0 -1,-0.1 -0.515 114.6 35.6 -67.1 96.2 10.9 3.6 7.3 13 13 A G S S- 0 0 53 -2,-1.1 2,-0.3 2,-0.1 6,-0.1 -0.944 105.1 -55.6 156.7-139.9 13.8 6.1 6.5 14 14 A K S S+ 0 0 165 -2,-0.3 2,-0.6 4,-0.1 -2,-0.0 -0.980 98.7 16.5-139.9 147.6 13.8 9.7 5.4 15 15 A G S S- 0 0 48 -2,-0.3 2,-0.3 2,-0.0 -2,-0.1 -0.861 103.6 -57.9 94.8-120.9 12.1 11.4 2.4 16 16 A A S S+ 0 0 46 -2,-0.6 -6,-0.2 -6,-0.2 -2,-0.1 -0.944 101.3 6.4-161.4 139.9 9.5 9.2 0.7 17 17 A S S S+ 0 0 45 -2,-0.3 4,-0.2 1,-0.1 -7,-0.1 0.858 70.1 136.2 58.7 47.7 9.2 5.7 -0.9 18 18 A R S S+ 0 0 176 2,-0.1 -1,-0.1 1,-0.0 -4,-0.1 -0.353 76.4 30.3-116.6 48.2 12.7 4.4 -0.1 19 19 A R S >> S+ 0 0 117 -6,-0.1 4,-2.8 6,-0.0 3,-0.6 0.205 100.6 71.7-163.9 -46.0 11.6 0.9 1.1 20 20 A L T 34>S+ 0 0 24 1,-0.3 2,-1.2 2,-0.2 5,-0.8 0.828 91.6 64.0 -53.0 -37.2 8.4 -0.1 -0.8 21 21 A R T 345S+ 0 0 222 -4,-0.2 -1,-0.3 1,-0.2 5,-0.1 -0.241 120.0 21.4 -85.8 45.9 10.4 -0.6 -4.1 22 22 A A T <45S+ 0 0 82 -2,-1.2 -2,-0.2 -3,-0.6 -1,-0.2 0.108 124.5 47.0-173.5 -48.2 12.4 -3.4 -2.5 23 23 A A T <5S- 0 0 62 -4,-2.8 -3,-0.1 2,-0.0 -4,-0.0 0.714 108.2 -77.8 -78.7-118.6 10.3 -4.8 0.4 24 24 A N T 5S+ 0 0 82 -3,-0.0 20,-1.7 2,-0.0 21,-0.7 -0.372 83.9 101.4-158.1 67.5 6.6 -5.5 -0.1 25 25 A K B < -D 43 0B 40 -5,-0.8 18,-0.2 18,-0.3 -3,-0.1 -0.886 40.0-166.9-135.6 170.0 4.4 -2.3 -0.1 26 26 A F - 0 0 19 16,-2.7 16,-0.5 -2,-0.3 2,-0.1 -0.953 28.0-106.0-156.7 145.7 2.7 -0.1 -2.8 27 27 A P - 0 0 51 0, 0.0 62,-0.3 0, 0.0 2,-0.3 -0.395 34.1-172.1 -74.8 152.2 1.1 3.3 -2.7 28 28 A A E -E 40 0C 0 12,-2.5 12,-2.9 60,-0.2 2,-0.4 -0.881 14.2-130.3-138.3 165.9 -2.7 3.8 -2.8 29 29 A I E -Ef 39 90C 40 60,-2.2 62,-2.3 -2,-0.3 2,-0.5 -0.959 5.6-150.7-128.0 140.3 -5.0 6.9 -3.2 30 30 A I E -Ef 38 91C 2 8,-2.0 8,-2.5 -2,-0.4 2,-0.2 -0.960 16.5-168.6-113.2 117.2 -8.1 7.9 -1.2 31 31 A Y E + f 0 92C 100 60,-2.6 62,-1.5 -2,-0.5 43,-0.1 -0.630 14.9 173.8 -96.3 158.8 -10.8 10.0 -3.0 32 32 A G - 0 0 46 3,-0.4 -1,-0.2 -2,-0.2 4,-0.1 0.463 49.8 -98.2-121.6 -85.3 -13.8 11.8 -1.5 33 33 A G S S+ 0 0 79 2,-0.3 3,-0.1 59,-0.1 -2,-0.0 0.324 100.7 30.7 159.2 45.4 -15.7 13.9 -4.0 34 34 A K S S+ 0 0 210 1,-0.7 2,-0.1 0, 0.0 -3,-0.0 -0.018 103.7 52.3-167.9 -68.5 -14.6 17.6 -3.9 35 35 A E S S- 0 0 163 1,-0.2 -1,-0.7 0, 0.0 -3,-0.4 -0.353 97.0 -75.0 -87.3 164.4 -11.0 18.2 -2.8 36 36 A A - 0 0 74 1,-0.1 -1,-0.2 -2,-0.1 -3,-0.0 -0.284 60.7-103.6 -56.9 142.4 -7.8 16.7 -4.2 37 37 A P - 0 0 53 0, 0.0 2,-0.7 0, 0.0 -6,-0.2 -0.243 27.6-111.8 -76.9 161.7 -7.3 13.0 -3.2 38 38 A L E -E 30 0C 90 -8,-2.5 -8,-2.0 -2,-0.0 2,-0.5 -0.849 22.0-152.8-101.1 108.9 -4.9 11.8 -0.5 39 39 A A E +E 29 0C 37 -2,-0.7 2,-0.2 -10,-0.2 -10,-0.2 -0.726 30.8 163.9 -81.5 124.5 -1.9 9.7 -1.7 40 40 A I E -E 28 0C 2 -12,-2.9 -12,-2.5 -2,-0.5 -32,-0.2 -0.830 38.3 -91.3-138.5 165.7 -0.8 7.3 1.1 41 41 A E - 0 0 6 -34,-2.6 2,-0.3 -2,-0.2 -34,-0.2 -0.475 36.7-174.5 -74.8 156.5 1.3 4.1 1.8 42 42 A L - 0 0 1 -16,-0.5 -16,-2.7 -2,-0.1 -36,-0.1 -0.962 21.1-126.2-149.9 138.5 -0.3 0.7 1.7 43 43 A D B -D 25 0B 36 -38,-0.5 -18,-0.3 -2,-0.3 -23,-0.0 -0.310 9.9-155.4 -69.5 165.7 1.1 -2.8 2.6 44 44 A H S > S+ 0 0 30 -20,-1.7 4,-1.1 3,-0.1 -19,-0.2 0.776 89.2 33.2-102.2 -62.2 0.9 -5.6 0.1 45 45 A D H >> S+ 0 0 117 -21,-0.7 4,-0.8 2,-0.2 3,-0.7 0.947 119.0 50.1 -59.8 -56.2 1.1 -8.8 2.3 46 46 A K H >4 S+ 0 0 124 1,-0.3 3,-0.7 2,-0.2 4,-0.4 0.891 112.4 45.6 -57.5 -48.6 -0.7 -7.4 5.3 47 47 A V H >> S+ 0 0 2 1,-0.2 4,-2.6 2,-0.2 3,-1.0 0.730 95.4 76.4 -68.4 -24.2 -3.8 -6.0 3.4 48 48 A M H + 0 0 0 -4,-2.6 2,-2.2 1,-0.2 5,-1.0 0.972 62.2 145.0 -54.2 -68.5 -8.6 -8.2 0.3 52 52 A A T <5S- 0 0 58 -4,-2.1 30,-0.4 3,-0.1 -1,-0.2 -0.415 77.2 -50.8 61.6 -74.5 -9.2 -11.9 -0.3 53 53 A K T 5S- 0 0 104 -2,-2.2 3,-0.1 -3,-0.3 26,-0.1 -0.162 104.2 -26.0-152.3-112.3 -11.5 -11.4 -3.4 54 54 A A T >>5S+ 0 0 39 1,-0.1 4,-1.2 2,-0.1 3,-1.0 0.753 113.3 83.5 -89.2 -29.4 -14.5 -9.1 -3.7 55 55 A E H 3>5S+ 0 0 104 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.745 72.0 79.8 -48.9 -36.9 -15.6 -9.1 -0.0 56 56 A F H 34