==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER LIPID BINDING PROTEIN 07-OCT-05 2B8I . COMPND 2 MOLECULE: PAS FACTOR; . SOURCE 2 ORGANISM_SCIENTIFIC: VIBRIO VULNIFICUS; . AUTHOR J.H.LEE,S.T.YANG,S.H.RHO,Y.J.IM,S.Y.KIM,Y.R.KIM,M.K.KIM, . 77 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5049.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 59 76.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 7.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 49 63.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 3.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 1 0 1 0 0 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A I 0 0 97 0, 0.0 75,-0.0 0, 0.0 5,-0.0 0.000 360.0 360.0 360.0 110.9 16.5 23.1 41.8 2 2 A R >> - 0 0 205 1,-0.1 3,-1.6 4,-0.0 4,-0.6 -0.434 360.0-111.2 -79.9 153.2 18.5 21.0 39.4 3 3 A P H >> S+ 0 0 116 0, 0.0 4,-0.9 0, 0.0 3,-0.7 0.781 114.1 64.1 -53.1 -29.2 20.8 22.5 36.7 4 4 A Y H 3> S+ 0 0 171 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.800 88.3 68.1 -67.8 -29.5 18.4 21.2 34.0 5 5 A M H <> S+ 0 0 35 -3,-1.6 4,-2.3 1,-0.2 -1,-0.2 0.829 96.7 54.9 -59.9 -32.2 15.5 23.3 35.2 6 6 A K H - 0 0 102 -2,-0.2 3,-2.2 1,-0.2 4,-0.3 -0.376 37.5-125.5 -61.0 130.4 2.6 32.4 17.8 21 21 A P G >> S+ 0 0 88 0, 0.0 3,-1.7 0, 0.0 4,-0.5 0.752 103.2 78.6 -48.4 -26.9 0.8 34.0 20.8 22 22 A E G 34 S+ 0 0 159 1,-0.3 3,-0.2 2,-0.1 4,-0.2 0.842 100.0 38.2 -53.6 -36.0 -2.1 31.6 20.2 23 23 A Q G <> S+ 0 0 65 -3,-2.2 4,-2.5 1,-0.2 -1,-0.3 0.330 85.7 100.1-100.4 8.6 -0.1 28.9 21.9 24 24 A H H <> S+ 0 0 15 -3,-1.7 4,-2.8 -4,-0.3 5,-0.2 0.919 81.2 53.0 -59.0 -44.6 1.5 30.9 24.7 25 25 A A H X S+ 0 0 57 -4,-0.5 4,-2.4 -3,-0.2 -1,-0.2 0.907 113.6 42.7 -57.3 -44.3 -1.0 29.8 27.3 26 26 A T H > S+ 0 0 104 -4,-0.2 4,-2.1 2,-0.2 -1,-0.2 0.854 111.6 54.4 -71.6 -36.0 -0.3 26.1 26.6 27 27 A I H X S+ 0 0 29 -4,-2.5 4,-1.5 2,-0.2 -2,-0.2 0.920 112.7 44.8 -63.3 -42.9 3.4 26.7 26.3 28 28 A R H X S+ 0 0 52 -4,-2.8 4,-1.8 2,-0.2 -2,-0.2 0.943 113.1 47.4 -66.4 -49.8 3.4 28.2 29.8 29 29 A Q H X S+ 0 0 93 -4,-2.4 4,-2.3 1,-0.2 -1,-0.2 0.857 107.1 59.8 -62.5 -33.3 1.1 25.6 31.5 30 30 A N H X S+ 0 0 85 -4,-2.1 4,-1.9 1,-0.2 -1,-0.2 0.930 105.3 47.0 -59.6 -47.9 3.2 22.8 29.9 31 31 A L H X S+ 0 0 0 -4,-1.5 4,-1.9 1,-0.2 -1,-0.2 0.869 109.9 54.6 -62.4 -36.6 6.3 24.1 31.8 32 32 A Y H X S+ 0 0 24 -4,-1.8 4,-2.2 1,-0.2 5,-0.4 0.908 107.0 50.7 -63.6 -39.5 4.3 24.3 34.9 33 33 A E H < S+ 0 0 134 -4,-2.3 -2,-0.2 1,-0.2 -1,-0.2 0.873 110.5 50.0 -64.2 -37.1 3.3 20.7 34.5 34 34 A Q H < S+ 0 0 96 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.818 117.8 37.9 -70.8 -34.1 7.0 19.7 34.1 35 35 A L H < S- 0 0 23 -4,-1.9 -2,-0.2 -5,-0.1 -1,-0.2 0.746 82.2-156.4 -91.9 -26.1 8.2 21.6 37.1 36 36 A D < + 0 0 145 -4,-2.2 -3,-0.1 -5,-0.2 -4,-0.1 0.926 29.5 171.9 45.7 58.5 5.4 20.9 39.6 37 37 A L - 0 0 22 -5,-0.4 -1,-0.1 1,-0.1 -2,-0.1 -0.601 38.5 -99.4 -95.6 157.5 6.2 24.0 41.7 38 38 A P >> - 0 0 76 0, 0.0 4,-2.1 0, 0.0 3,-0.7 -0.380 43.3-104.2 -69.5 155.8 4.1 25.5 44.6 39 39 A F H 3> S+ 0 0 146 1,-0.2 4,-2.8 2,-0.2 5,-0.2 0.849 118.5 59.4 -50.9 -42.8 2.0 28.4 43.5 40 40 A D H 3> S+ 0 0 104 1,-0.2 4,-1.3 2,-0.2 -1,-0.2 0.898 111.3 40.5 -57.1 -41.7 4.2 31.0 45.1 41 41 A K H <> S+ 0 0 41 -3,-0.7 4,-2.4 2,-0.2 -1,-0.2 0.828 111.5 56.7 -75.1 -32.9 7.2 29.9 43.0 42 42 A Q H X S+ 0 0 49 -4,-2.1 4,-2.6 1,-0.2 -2,-0.2 0.918 106.9 50.9 -62.0 -41.3 4.9 29.5 39.9 43 43 A L H X S+ 0 0 90 -4,-2.8 4,-3.0 2,-0.2 5,-0.2 0.883 109.1 49.7 -64.3 -38.7 4.0 33.2 40.4 44 44 A A H X S+ 0 0 28 -4,-1.3 4,-2.2 -5,-0.2 5,-0.3 0.909 111.4 49.6 -66.2 -41.5 7.6 34.2 40.6 45 45 A L H X>S+ 0 0 0 -4,-2.4 5,-2.4 2,-0.2 4,-1.5 0.908 115.1 44.6 -62.6 -41.6 8.4 32.2 37.4 46 46 A Y H <>S+ 0 0 101 -4,-2.6 5,-3.4 3,-0.2 -2,-0.2 0.963 116.5 43.7 -67.7 -51.8 5.4 33.9 35.6 47 47 A A H <5S+ 0 0 64 -4,-3.0 -2,-0.2 1,-0.2 -1,-0.2 0.822 121.8 36.7 -66.5 -33.8 6.1 37.5 36.8 48 48 A G H <5S- 0 0 32 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.689 138.7 -2.9 -94.3 -18.6 9.8 37.5 36.2 49 49 A A T X5S+ 0 0 0 -4,-1.5 4,-2.2 -5,-0.3 -3,-0.2 0.639 122.4 50.2-139.3 -51.7 10.0 35.4 33.1 50 50 A L H >>S+ 0 0 27 0, 0.0 5,-2.8 0, 0.0 6,-0.6 0.897 113.3 50.3 -58.3 -40.4 7.7 39.2 30.2 53 53 A A H ><5S+ 0 0 0 -4,-2.2 3,-0.6 1,-0.2 -2,-0.2 0.892 112.2 47.8 -63.7 -39.5 8.6 36.7 27.5 54 54 A S H 3<5S+ 0 0 27 -4,-2.1 -1,-0.2 1,-0.2 -3,-0.2 0.820 110.0 51.8 -70.4 -33.1 4.9 36.4 26.4 55 55 A S H 3<5S- 0 0 70 -4,-2.2 -1,-0.2 -5,-0.2 -2,-0.2 0.495 117.5-111.8 -82.9 -4.3 4.5 40.2 26.3 56 56 A G T <<5S+ 0 0 29 -3,-0.6 -3,-0.2 -4,-0.5 -2,-0.1 0.789 80.8 125.9 79.7 29.4 7.6 40.6 24.1 57 57 A K S S- 0 0 94 1,-0.1 4,-3.5 -3,-0.0 5,-0.3 -0.938 78.4-128.2-120.1 141.1 16.7 39.1 23.3 61 61 A H H > S+ 0 0 137 -2,-0.4 4,-2.9 1,-0.2 5,-0.2 0.931 110.7 39.9 -47.0 -59.1 19.7 36.9 24.3 62 62 A E H > S+ 0 0 126 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.923 118.3 47.1 -59.1 -49.1 20.9 39.2 27.1 63 63 A A H > S+ 0 0 35 1,-0.2 4,-1.8 2,-0.2 -1,-0.2 0.867 115.1 47.0 -62.3 -38.8 17.4 40.0 28.3 64 64 A I H X S+ 0 0 7 -4,-3.5 4,-2.6 2,-0.2 -2,-0.2 0.928 111.2 50.2 -69.5 -45.9 16.4 36.4 28.3 65 65 A S H X S+ 0 0 30 -4,-2.9 4,-2.5 -5,-0.3 -2,-0.2 0.874 111.1 49.9 -60.7 -38.2 19.5 35.2 30.1 66 66 A N H X S+ 0 0 85 -4,-2.2 4,-2.2 -5,-0.2 -1,-0.2 0.896 110.5 49.1 -68.8 -40.2 19.0 37.9 32.8 67 67 A A H X S+ 0 0 13 -4,-1.8 4,-2.7 2,-0.2 5,-0.3 0.947 113.1 47.9 -64.2 -46.3 15.4 36.8 33.3 68 68 A V H X S+ 0 0 0 -4,-2.6 4,-2.6 1,-0.2 5,-0.2 0.948 112.8 46.9 -59.4 -51.0 16.4 33.2 33.6 69 69 A D H X S+ 0 0 83 -4,-2.5 4,-1.7 1,-0.2 -1,-0.2 0.899 114.4 48.3 -59.9 -40.4 19.2 33.8 36.0 70 70 A S H X S+ 0 0 65 -4,-2.2 4,-1.7 2,-0.2 -1,-0.2 0.923 112.9 45.4 -67.6 -46.3 17.1 36.0 38.2 71 71 A V H X S+ 0 0 1 -4,-2.7 4,-2.3 1,-0.2 5,-0.2 0.909 110.0 54.9 -65.9 -39.4 14.1 33.7 38.4 72 72 A V H X S+ 0 0 18 -4,-2.6 4,-1.2 -5,-0.3 -1,-0.2 0.910 106.2 52.6 -59.7 -39.9 16.3 30.7 39.1 73 73 A Q H < S+ 0 0 134 -4,-1.7 3,-0.4 -5,-0.2 -1,-0.2 0.910 110.3 48.1 -61.4 -40.6 17.7 32.6 42.0 74 74 A L H < S+ 0 0 107 -4,-1.7 -1,-0.2 1,-0.2 -2,-0.2 0.846 107.3 55.7 -67.3 -35.0 14.2 33.2 43.3 75 75 A L H < S+ 0 0 14 -4,-2.3 2,-0.3 -5,-0.1 -1,-0.2 0.702 102.8 67.3 -70.6 -21.1 13.3 29.6 42.8 76 76 A E < 0 0 96 -4,-1.2 0, 0.0 -3,-0.4 0, 0.0 -0.791 360.0 360.0-101.5 145.3 16.2 28.6 45.1 77 77 A I 0 0 210 -2,-0.3 -3,-0.1 0, 0.0 -4,-0.0 -0.627 360.0 360.0-128.8 360.0 16.3 29.4 48.8