==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER SURFACE PROTEIN 15-FEB-99 1B9W . COMPND 2 MOLECULE: PROTEIN (MEROZOITE SURFACE PROTEIN 1); . SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM CYNOMOLGI; . AUTHOR G.A.BENTLEY,V.CHITARRA,I.HOLM,S.LONGACRE . 91 1 5 5 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6437.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 49 53.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 21 23.1 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 16 17.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 3 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 4 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 94 0, 0.0 2,-0.1 0, 0.0 5,-0.1 0.000 360.0 360.0 360.0 152.2 -0.1 14.2 36.7 2 2 A S > - 0 0 59 1,-0.1 3,-1.7 3,-0.1 4,-0.3 -0.380 360.0-126.3 -67.9 140.9 -2.1 13.8 33.5 3 3 A S G > S+ 0 0 76 1,-0.3 3,-1.2 2,-0.2 -1,-0.1 0.771 103.8 65.8 -63.4 -30.1 -1.5 16.7 31.0 4 4 A E G 3 S+ 0 0 149 1,-0.3 -1,-0.3 3,-0.0 -2,-0.0 0.754 101.7 50.3 -61.2 -31.0 -5.2 17.5 30.7 5 5 A H G < S+ 0 0 39 -3,-1.7 15,-2.8 2,-0.1 -1,-0.3 0.420 80.8 114.3 -98.8 11.1 -5.4 18.6 34.3 6 6 A R S < S- 0 0 141 -3,-1.2 2,-0.2 -4,-0.3 13,-0.1 -0.414 75.3-108.1 -70.0 143.3 -2.4 20.9 34.2 7 7 A a + 0 0 28 11,-0.4 5,-0.1 -2,-0.2 -1,-0.1 -0.544 43.3 165.6 -74.4 143.7 -3.3 24.6 34.8 8 8 A I S S+ 0 0 128 -2,-0.2 -1,-0.2 3,-0.0 -2,-0.0 0.384 72.5 48.9-132.7 -6.5 -3.1 26.8 31.7 9 9 A D S S+ 0 0 121 1,-0.0 2,-0.4 2,-0.0 -2,-0.1 0.613 96.3 73.3-107.6 -17.1 -5.0 29.9 32.8 10 10 A T - 0 0 47 17,-0.0 2,-1.0 3,-0.0 17,-0.0 -0.835 69.0-138.0-108.2 137.1 -3.5 30.7 36.3 11 11 A N - 0 0 159 -2,-0.4 -3,-0.0 -3,-0.0 -2,-0.0 -0.843 39.9-141.6 -85.0 101.0 -0.2 32.1 37.2 12 12 A V - 0 0 50 -2,-1.0 4,-0.1 1,-0.1 3,-0.1 -0.538 10.2-115.2 -77.1 136.3 0.4 29.7 40.1 13 13 A P > - 0 0 25 0, 0.0 3,-1.1 0, 0.0 -1,-0.1 -0.204 40.6 -88.3 -60.6 156.3 2.0 31.1 43.3 14 14 A E T 3 S+ 0 0 163 1,-0.3 27,-0.4 16,-0.0 3,-0.1 -0.329 113.9 20.6 -60.9 142.3 5.4 29.7 44.3 15 15 A N T 3 S+ 0 0 65 1,-0.2 16,-2.5 15,-0.1 2,-0.3 0.717 105.0 111.0 64.2 30.3 5.2 26.6 46.5 16 16 A A E < -A 30 0A 19 -3,-1.1 2,-0.3 14,-0.3 14,-0.2 -0.866 56.8-144.1-127.9 156.5 1.7 25.8 45.3 17 17 A A E -A 29 0A 6 12,-2.6 12,-2.1 -2,-0.3 2,-0.4 -0.849 16.0-153.8-109.1 160.6 0.2 23.1 43.1 18 18 A a E -A 28 0A 12 -2,-0.3 2,-0.4 10,-0.2 -11,-0.4 -0.994 8.2-166.8-144.1 142.6 -2.6 23.6 40.7 19 19 A Y E -A 27 0A 30 8,-2.1 8,-2.3 -2,-0.4 2,-0.5 -0.996 11.3-149.7-126.9 133.1 -5.3 21.4 39.2 20 20 A R E -A 26 0A 55 -15,-2.8 6,-0.2 -2,-0.4 2,-0.1 -0.892 22.8-149.2-106.5 118.9 -7.6 22.2 36.2 21 21 A Y > - 0 0 74 4,-2.7 3,-1.9 -2,-0.5 -2,-0.0 -0.508 29.0 -98.2 -82.5 173.1 -11.0 20.5 36.6 22 22 A L T 3 S+ 0 0 165 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.591 119.8 61.4 -59.5 -25.1 -13.3 19.2 33.9 23 23 A D T 3 S- 0 0 118 2,-0.1 -1,-0.3 0, 0.0 3,-0.1 0.363 118.6-107.6 -86.9 2.5 -15.5 22.4 34.1 24 24 A G S < S+ 0 0 29 -3,-1.9 2,-0.2 1,-0.3 -2,-0.1 0.433 79.7 127.1 89.3 -4.8 -12.5 24.5 33.0 25 25 A T - 0 0 71 -18,-0.0 -4,-2.7 -5,-0.0 2,-0.4 -0.530 46.1-149.1 -83.2 158.2 -12.0 26.0 36.5 26 26 A E E -A 20 0A 35 -6,-0.2 2,-0.4 -2,-0.2 -6,-0.2 -0.989 9.6-168.3-126.7 144.5 -8.6 25.9 38.1 27 27 A E E -A 19 0A 73 -8,-2.3 -8,-2.1 -2,-0.4 2,-0.3 -0.994 3.9-161.7-133.2 133.0 -7.7 25.7 41.8 28 28 A W E -A 18 0A 60 -2,-0.4 2,-0.3 -10,-0.2 -10,-0.2 -0.849 10.0-176.2-109.7 147.4 -4.3 26.2 43.3 29 29 A R E -A 17 0A 35 -12,-2.1 -12,-2.6 -2,-0.3 57,-0.1 -0.992 31.4-103.1-138.4 141.1 -3.4 25.1 46.8 30 30 A b E -A 16 0A 11 -2,-0.3 -14,-0.3 -14,-0.2 3,-0.1 -0.357 41.2-108.0 -62.8 152.9 -0.3 25.5 48.8 31 31 A L > - 0 0 54 -16,-2.5 3,-1.2 1,-0.2 53,-0.1 -0.191 52.9 -73.9 -69.2 158.7 2.0 22.5 49.0 32 32 A L T 3 S+ 0 0 11 51,-0.3 -1,-0.2 1,-0.2 23,-0.1 -0.293 122.2 32.0 -55.7 149.2 2.2 20.7 52.4 33 33 A Y T 3 S+ 0 0 63 21,-0.4 11,-2.9 1,-0.3 2,-0.3 0.644 105.5 91.6 68.9 22.4 4.2 22.6 55.0 34 34 A F E < -B 43 0B 45 -3,-1.2 2,-0.4 9,-0.3 -1,-0.3 -0.970 62.6-148.7-136.7 152.7 3.1 25.9 53.6 35 35 A K E -B 42 0B 80 7,-2.9 7,-3.2 -2,-0.3 2,-0.3 -0.982 17.8-119.0-132.8 138.6 0.1 28.0 54.4 36 36 A E E +B 41 0B 108 -2,-0.4 2,-0.3 5,-0.2 5,-0.2 -0.514 34.9 161.1 -77.8 137.9 -2.0 30.3 52.2 37 37 A D E > S-B 40 0B 114 3,-2.6 3,-1.8 -2,-0.3 -2,-0.0 -0.834 71.5 -34.6-153.3 110.5 -2.3 34.0 52.8 38 38 A A T 3 S- 0 0 101 -2,-0.3 3,-0.1 1,-0.3 -2,-0.0 0.798 125.4 -38.6 47.5 52.1 -3.5 36.5 50.1 39 39 A G T 3 S+ 0 0 40 1,-0.3 2,-0.4 -26,-0.0 -1,-0.3 0.471 118.7 103.3 87.6 -2.2 -1.8 34.7 47.2 40 40 A K E < -B 37 0B 139 -3,-1.8 -3,-2.6 -27,-0.1 2,-0.8 -0.922 62.1-143.6-118.5 142.6 1.4 33.7 49.0 41 41 A b E -B 36 0B 8 -27,-0.4 -5,-0.2 -2,-0.4 3,-0.0 -0.928 25.9-159.8-103.3 99.3 2.3 30.3 50.3 42 42 A V E -B 35 0B 55 -7,-3.2 -7,-2.9 -2,-0.8 -2,-0.0 -0.660 27.9 -97.6 -87.3 145.7 4.2 31.0 53.6 43 43 A P E +B 34 0B 92 0, 0.0 -9,-0.3 0, 0.0 -10,-0.1 -0.318 43.7 173.6 -64.4 134.5 6.5 28.4 55.2 44 44 A A > + 0 0 17 -11,-2.9 3,-1.5 -12,-0.1 -11,-0.1 -0.548 4.6 169.4-146.0 70.7 4.6 26.5 57.9 45 45 A P T 3 S+ 0 0 93 0, 0.0 -11,-0.1 0, 0.0 -1,-0.1 0.775 79.2 37.2 -71.4 -20.8 6.9 23.7 59.1 46 46 A N T 3 S+ 0 0 123 -13,-0.1 23,-0.0 23,-0.1 22,-0.0 -0.135 78.4 143.4-122.0 34.5 4.8 22.7 62.1 47 47 A M < - 0 0 15 -3,-1.5 2,-0.3 7,-0.1 -3,-0.1 -0.446 36.8-149.8 -65.5 149.6 1.4 23.2 60.8 48 48 A T > - 0 0 60 16,-0.0 3,-2.3 22,-0.0 6,-0.8 -0.823 28.6 -97.7-119.9 175.2 -1.0 20.6 62.2 49 49 A c T 3> S+ 0 0 30 1,-0.3 4,-0.6 -2,-0.3 6,-0.1 0.652 117.0 67.7 -64.6 -13.2 -4.1 18.7 61.0 50 50 A K T 34 S+ 0 0 206 3,-0.2 2,-0.7 2,-0.1 -1,-0.3 0.596 87.0 73.9 -80.4 -13.3 -6.2 21.2 63.0 51 51 A D T X4 S- 0 0 45 -3,-2.3 3,-1.7 1,-0.2 4,-0.2 -0.917 130.2 -37.2-107.2 100.6 -5.3 24.0 60.7 52 52 A K G >4 S- 0 0 155 -2,-0.7 3,-2.2 1,-0.3 -1,-0.2 0.867 114.2 -57.5 54.1 40.7 -7.2 23.6 57.4 53 53 A N G >< S- 0 0 52 -4,-0.6 3,-1.8 1,-0.3 -1,-0.3 0.707 92.0 -69.8 63.7 27.8 -6.8 19.9 57.5 54 54 A G G < S- 0 0 0 -3,-1.7 -21,-0.4 -6,-0.8 -1,-0.3 0.554 88.8 -64.4 70.5 7.8 -3.0 20.1 57.6 55 55 A G G < S+ 0 0 20 -3,-2.2 -1,-0.3 1,-0.3 -2,-0.2 0.340 104.1 136.5 90.0 -0.3 -3.1 21.4 54.0 56 56 A d S < S- 0 0 6 -3,-1.8 -1,-0.3 1,-0.2 30,-0.3 -0.351 70.8 -80.3 -76.9 154.8 -4.5 18.0 52.9 57 57 A A > - 0 0 1 28,-3.1 3,-2.4 1,-0.1 -1,-0.2 -0.250 45.7-113.0 -50.5 147.7 -7.3 18.0 50.4 58 58 A P T 3 S+ 0 0 96 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.811 116.9 47.6 -52.4 -37.5 -10.6 18.6 52.1 59 59 A E T 3 S+ 0 0 111 2,-0.1 16,-0.4 29,-0.1 2,-0.2 0.379 98.9 91.8 -89.6 0.5 -12.0 15.2 51.4 60 60 A A S < S- 0 0 9 -3,-2.4 2,-0.4 14,-0.1 14,-0.2 -0.654 79.7-115.1 -88.9 162.8 -8.7 13.5 52.6 61 61 A E E -C 73 0C 79 12,-2.5 12,-3.1 -2,-0.2 2,-0.5 -0.754 25.2-151.4 -96.8 130.4 -7.9 12.3 56.1 62 62 A c E +C 72 0C 22 -2,-0.4 2,-0.4 10,-0.2 10,-0.2 -0.907 17.3 177.4-102.8 131.7 -5.1 14.1 57.9 63 63 A K E -C 71 0C 108 8,-2.2 8,-2.3 -2,-0.5 2,-0.5 -0.968 27.9-128.0-130.6 141.4 -3.0 12.2 60.5 64 64 A M E -C 70 0C 76 -2,-0.4 6,-0.2 6,-0.2 2,-0.0 -0.857 25.6-140.8 -89.0 127.2 0.0 13.4 62.4 65 65 A N > - 0 0 66 4,-3.3 3,-1.7 -2,-0.5 -1,-0.0 -0.207 28.7-102.1 -76.3 172.3 2.9 11.0 62.1 66 66 A D T 3 S+ 0 0 161 1,-0.3 -1,-0.1 2,-0.1 -2,-0.0 0.878 124.7 56.4 -69.1 -26.4 5.2 10.3 65.3 67 67 A K T 3 S- 0 0 170 2,-0.1 -1,-0.3 1,-0.0 3,-0.1 0.264 126.8-102.8 -85.8 8.7 7.8 12.6 63.9 68 68 A N S < S+ 0 0 108 -3,-1.7 2,-0.3 1,-0.3 -2,-0.1 0.743 76.0 147.9 73.3 25.2 5.2 15.4 63.7 69 69 A E - 0 0 99 -23,-0.0 -4,-3.3 -21,-0.0 2,-0.3 -0.657 51.1-117.5 -91.3 145.0 4.9 14.9 60.0 70 70 A I E -C 64 0C 10 -2,-0.3 2,-0.5 -6,-0.2 -6,-0.2 -0.656 27.7-169.6 -89.0 132.0 1.6 15.4 58.1 71 71 A V E -C 63 0C 55 -8,-2.3 -8,-2.2 -2,-0.3 2,-0.5 -0.983 3.5-163.1-122.8 112.9 0.2 12.3 56.4 72 72 A d E -C 62 0C 19 12,-0.5 2,-0.5 -2,-0.5 -10,-0.2 -0.868 3.7-162.5 -95.3 138.1 -2.7 12.9 54.0 73 73 A K E -C 61 0C 118 -12,-3.1 -12,-2.5 -2,-0.5 2,-0.9 -0.947 13.9-149.8-124.0 124.7 -4.8 9.9 53.1 74 74 A e - 0 0 17 -2,-0.5 5,-0.2 -14,-0.2 -14,-0.1 -0.788 18.8-173.2 -85.3 105.6 -7.1 9.8 50.0 75 75 A T + 0 0 93 -2,-0.9 -1,-0.2 -16,-0.4 2,-0.1 0.667 49.2 99.8 -77.1 -26.9 -9.8 7.4 51.3 76 76 A K S > S- 0 0 174 -17,-0.1 3,-1.8 1,-0.1 2,-0.1 -0.460 87.4-103.4 -59.5 136.9 -12.0 6.9 48.2 77 77 A E T 3 S+ 0 0 192 1,-0.3 3,-0.1 -2,-0.1 -1,-0.1 -0.388 106.1 14.6 -63.7 139.1 -11.0 3.6 46.6 78 78 A G T 3 S+ 0 0 47 1,-0.3 13,-2.3 -4,-0.1 2,-0.4 0.688 96.9 128.0 71.0 9.2 -8.8 4.0 43.5 79 79 A S E < -D 90 0D 21 -3,-1.8 -1,-0.3 11,-0.2 11,-0.3 -0.822 42.8-163.9 -89.5 141.5 -8.3 7.6 44.6 80 80 A E E -D 89 0D 118 9,-3.5 9,-3.0 -2,-0.4 2,-0.2 -0.984 20.7-107.1-128.7 150.1 -4.6 8.5 44.6 81 81 A P E -D 88 0D 61 0, 0.0 2,-0.4 0, 0.0 3,-0.3 -0.442 25.2-159.5 -73.3 136.3 -2.7 11.4 46.2 82 82 A L E >>>S+D 87 0D 28 5,-3.2 5,-1.8 -2,-0.2 3,-1.3 -0.968 80.1 2.5-107.4 139.9 -1.3 14.2 44.0 83 83 A F G >45S- 0 0 82 -2,-0.4 3,-0.9 1,-0.3 -51,-0.3 0.895 139.1 -51.6 53.7 45.3 1.5 16.3 45.5 84 84 A E G 345S- 0 0 141 -3,-0.3 -12,-0.5 1,-0.2 -1,-0.3 0.594 112.4 -45.6 66.3 19.8 1.4 14.2 48.7 85 85 A G G <45S+ 0 0 0 -3,-1.3 -28,-3.1 2,-0.4 -1,-0.2 0.482 100.3 123.1 102.3 8.4 -2.4 14.5 49.2 86 86 A V T <<5S+ 0 0 0 -3,-0.9 2,-0.3 -4,-0.8 -3,-0.2 0.836 93.9 18.7 -62.6 -32.8 -2.9 18.2 48.6 87 87 A F E