==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION, VIRAL PROTEIN 11-OCT-05 2B9D . COMPND 2 MOLECULE: E7 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN PAPILLOMAVIRUS TYPE 1A; . AUTHOR X.LIU,A.CLEMENTS,K.ZHAO,R.MARMORSTEIN . 102 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7423.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 62 60.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 18 17.6 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 28 27.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 42 A M 0 0 119 0, 0.0 25,-0.4 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0 102.4 0.9 28.6 47.6 2 43 A K - 0 0 151 23,-0.2 23,-0.3 21,-0.1 21,-0.0 -0.576 360.0-173.4 -65.2 135.1 3.2 27.2 45.0 3 44 A Q E -A 24 0A 44 21,-2.7 21,-2.1 -2,-0.3 2,-0.1 -0.987 28.7-104.3-131.5 151.8 4.3 29.8 42.5 4 45 A P E -A 23 0A 100 0, 0.0 2,-0.3 0, 0.0 65,-0.3 -0.436 41.6-175.7 -70.0 141.0 6.3 29.8 39.2 5 46 A Y E -A 22 0A 24 17,-2.2 17,-2.5 -2,-0.1 2,-0.7 -0.985 24.1-133.3-149.0 129.3 9.9 31.0 39.7 6 47 A A E -A 21 0A 67 -2,-0.3 2,-0.4 15,-0.2 15,-0.2 -0.803 21.3-156.7 -88.4 111.0 12.7 31.6 37.2 7 48 A V E -A 20 0A 3 13,-3.3 13,-2.0 -2,-0.7 2,-0.4 -0.735 10.9-175.4 -86.2 130.1 15.9 30.2 38.4 8 49 A V E +A 19 0A 58 -2,-0.4 2,-0.3 11,-0.2 11,-0.2 -0.994 16.4 148.5-128.3 125.6 19.1 31.8 37.0 9 50 A A E -A 18 0A 17 9,-2.1 9,-3.0 -2,-0.4 2,-0.2 -0.991 46.3-100.6-155.4 152.2 22.5 30.4 37.8 10 51 A S E -A 17 0A 38 -2,-0.3 32,-0.4 7,-0.2 7,-0.2 -0.529 45.9-103.8 -79.2 137.8 25.9 30.0 36.2 11 52 A C > - 0 0 0 5,-3.5 4,-1.5 -2,-0.2 32,-0.2 -0.334 24.1-127.6 -55.4 139.4 26.8 26.6 34.8 12 53 A A T 4 S+ 0 0 39 30,-2.4 -1,-0.1 1,-0.2 31,-0.1 0.766 103.6 30.8 -53.9 -34.8 29.2 24.6 37.0 13 54 A Y T 4 S+ 0 0 178 3,-0.1 -1,-0.2 31,-0.0 30,-0.1 0.777 134.2 17.4-106.3 -30.1 31.6 23.9 34.2 14 55 A C T 4 S- 0 0 63 2,-0.2 -2,-0.1 0, 0.0 3,-0.1 0.460 85.3-125.9-129.4 -6.2 31.5 26.9 31.8 15 56 A E < + 0 0 120 -4,-1.5 2,-0.1 1,-0.2 -3,-0.1 0.548 59.2 143.8 65.3 7.0 29.8 29.8 33.6 16 57 A K - 0 0 131 -6,-0.1 -5,-3.5 1,-0.1 2,-0.2 -0.470 61.5-100.6 -57.9 145.5 27.2 30.2 30.9 17 58 A L E -A 10 0A 85 -7,-0.2 2,-0.4 -2,-0.1 -7,-0.2 -0.574 34.4-155.7 -75.3 138.5 23.9 31.2 32.5 18 59 A V E -A 9 0A 17 -9,-3.0 -9,-2.1 -2,-0.2 2,-0.5 -0.967 6.8-164.3-116.5 129.1 21.4 28.4 32.9 19 60 A R E +A 8 0A 171 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.965 16.0 160.7-117.1 127.7 17.7 29.3 33.2 20 61 A L E -A 7 0A 70 -13,-2.0 -13,-3.3 -2,-0.5 2,-0.4 -0.985 29.1-132.6-142.0 155.0 15.1 27.0 34.5 21 62 A T E -A 6 0A 107 -2,-0.3 2,-0.3 -15,-0.2 -15,-0.2 -0.848 22.3-175.9-108.1 138.6 11.6 27.4 35.8 22 63 A V E -A 5 0A 36 -17,-2.5 -17,-2.2 -2,-0.4 2,-0.5 -0.916 22.8-140.5-126.9 157.1 10.3 25.8 38.9 23 64 A L E +A 4 0A 112 -2,-0.3 2,-0.3 -19,-0.2 -21,-0.1 -0.991 48.6 137.0-115.3 117.1 6.9 25.7 40.7 24 65 A A E -A 3 0A 14 -21,-2.1 -21,-2.7 -2,-0.5 2,-0.1 -0.985 53.2 -98.4-158.4 155.0 7.5 25.9 44.4 25 66 A D > - 0 0 67 -2,-0.3 4,-2.2 -23,-0.3 3,-0.3 -0.417 48.9 -98.9 -73.9 165.6 6.4 27.4 47.7 26 67 A H H > S+ 0 0 68 -25,-0.4 4,-2.5 1,-0.2 5,-0.2 0.862 121.9 49.5 -52.1 -48.0 8.3 30.4 49.1 27 68 A S H > S+ 0 0 72 1,-0.2 4,-2.6 2,-0.2 -1,-0.2 0.874 109.1 51.9 -69.4 -32.1 10.4 28.3 51.5 28 69 A A H > S+ 0 0 30 -3,-0.3 4,-3.1 2,-0.2 -1,-0.2 0.933 111.0 47.9 -67.3 -41.3 11.5 25.9 48.8 29 70 A I H X S+ 0 0 1 -4,-2.2 4,-2.7 2,-0.2 -2,-0.2 0.920 112.3 48.9 -66.2 -42.2 12.6 28.7 46.6 30 71 A R H X S+ 0 0 91 -4,-2.5 4,-2.1 -5,-0.2 -1,-0.2 0.928 112.8 48.8 -59.1 -46.9 14.5 30.3 49.5 31 72 A Q H X S+ 0 0 128 -4,-2.6 4,-2.6 2,-0.2 -2,-0.2 0.929 111.5 49.2 -55.8 -48.2 16.1 26.9 50.2 32 73 A L H X S+ 0 0 47 -4,-3.1 4,-2.3 1,-0.2 -2,-0.2 0.932 110.4 49.4 -61.0 -46.3 17.0 26.4 46.5 33 74 A E H X S+ 0 0 5 -4,-2.7 4,-0.9 1,-0.2 -1,-0.2 0.869 110.4 51.8 -63.1 -36.1 18.6 29.9 46.3 34 75 A E H >X S+ 0 0 82 -4,-2.1 3,-0.7 -5,-0.2 4,-0.7 0.933 109.4 50.1 -63.1 -43.8 20.5 29.2 49.5 35 76 A M H >X>S+ 0 0 69 -4,-2.6 5,-2.4 1,-0.2 3,-0.8 0.888 105.3 57.5 -59.8 -38.6 21.8 25.9 47.9 36 77 A L H 3<5S+ 0 0 24 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.738 93.5 69.1 -70.5 -22.3 22.8 27.7 44.8 37 78 A L H <<5S- 0 0 60 -4,-0.9 -1,-0.2 -3,-0.7 -2,-0.2 0.904 131.1 -28.3 -57.3 -44.1 25.1 30.0 46.7 38 79 A R H <<5S+ 0 0 84 -3,-0.8 -2,-0.2 -4,-0.7 -3,-0.1 0.594 129.0 55.8-141.5 -50.9 27.6 27.3 47.6 39 80 A S T <5S+ 0 0 91 -4,-0.5 2,-0.4 -5,-0.4 -3,-0.2 0.658 104.3 38.2 -85.5 -17.0 26.3 23.7 47.8 40 81 A L < - 0 0 62 -5,-2.4 2,-0.4 -6,-0.1 -1,-0.1 -0.994 54.8-174.6-140.2 136.0 24.7 23.1 44.4 41 82 A N - 0 0 91 -2,-0.4 2,-0.2 -32,-0.0 -30,-0.1 -0.983 17.6-138.8-124.1 143.7 25.4 24.1 40.8 42 83 A I - 0 0 30 -32,-0.4 -30,-2.4 -2,-0.4 2,-0.4 -0.501 16.8-135.3 -92.7 162.6 23.3 23.5 37.8 43 84 A V - 0 0 46 -32,-0.2 -32,-0.1 -2,-0.2 -26,-0.0 -0.981 14.9-121.3-125.8 136.8 24.8 22.5 34.4 44 85 A C > - 0 0 3 -2,-0.4 4,-2.5 -28,-0.1 5,-0.2 -0.217 33.3-101.8 -75.9 165.0 24.0 23.9 30.9 45 86 A P T 4 S+ 0 0 93 0, 0.0 4,-0.4 0, 0.0 5,-0.1 0.892 120.2 45.1 -55.1 -44.2 22.6 21.7 28.1 46 87 A L T >> S+ 0 0 92 2,-0.2 4,-1.7 1,-0.2 3,-1.3 0.935 116.9 43.3 -66.7 -46.1 26.0 21.4 26.3 47 88 A C T 34 S+ 0 0 29 1,-0.3 -1,-0.2 2,-0.2 -4,-0.0 0.860 103.5 67.3 -70.6 -26.8 28.0 20.7 29.4 48 89 A T T 3< S+ 0 0 89 -4,-2.5 -1,-0.3 1,-0.3 -2,-0.2 0.724 114.9 30.5 -64.1 -16.7 25.2 18.3 30.4 49 90 A L T <4 S- 0 0 133 -3,-1.3 -1,-0.3 -4,-0.4 -2,-0.2 0.555 123.5-104.4-110.9 -23.2 26.4 16.2 27.4 50 91 A Q < 0 0 164 -4,-1.7 -3,-0.2 -5,-0.1 -2,-0.1 0.824 360.0 360.0 95.4 97.0 30.1 17.2 27.5 51 92 A R 0 0 231 0, 0.0 -4,-0.1 0, 0.0 -5,-0.1 0.363 360.0 360.0 173.0 360.0 31.9 19.6 25.2 52 !* 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 53 42 B M 0 0 127 0, 0.0 25,-0.2 0, 0.0 23,-0.1 0.000 360.0 360.0 360.0 -82.0 32.0 38.0 59.3 54 43 B K - 0 0 152 23,-0.1 23,-0.3 21,-0.1 21,-0.1 -0.429 360.0-178.1 -67.0 142.0 29.6 39.0 56.5 55 44 B Q E -B 76 0B 93 21,-2.1 21,-2.4 -2,-0.1 19,-0.1 -0.982 33.8 -89.8-134.4 159.6 28.6 36.3 54.0 56 45 B P E +B 75 0B 71 0, 0.0 2,-0.3 0, 0.0 19,-0.2 -0.342 45.4 179.7 -63.4 138.2 26.5 36.2 50.9 57 46 B Y E -B 74 0B 25 17,-2.4 17,-2.8 2,-0.0 2,-0.7 -0.991 26.2-133.2-141.4 141.6 22.8 35.5 51.4 58 47 B A E -B 73 0B 2 -2,-0.3 2,-0.5 15,-0.2 15,-0.2 -0.879 19.8-156.5 -95.8 110.4 19.9 35.2 49.0 59 48 B V E -B 72 0B 3 13,-2.9 13,-2.4 -2,-0.7 2,-0.4 -0.776 13.3-178.2 -85.0 123.5 16.9 37.2 50.2 60 49 B V E +B 71 0B 1 -2,-0.5 2,-0.3 11,-0.2 11,-0.2 -0.988 15.5 147.3-124.3 123.6 13.7 35.9 48.7 61 50 B A E -B 70 0B 7 9,-2.0 9,-2.8 -2,-0.4 2,-0.2 -0.993 48.3 -93.3-154.5 154.2 10.4 37.6 49.5 62 51 B S E -B 69 0B 42 -2,-0.3 32,-0.3 7,-0.2 7,-0.2 -0.489 48.0-104.0 -74.4 135.1 7.1 38.5 48.0 63 52 B C > - 0 0 2 5,-3.1 4,-1.3 -2,-0.2 32,-0.3 -0.270 25.4-126.7 -53.4 135.4 6.7 41.9 46.3 64 53 B A T 4 S+ 0 0 40 30,-2.3 -1,-0.1 2,-0.1 31,-0.1 0.802 103.0 28.9 -50.7 -35.8 4.8 44.4 48.5 65 54 B Y T 4 S+ 0 0 138 3,-0.1 -1,-0.1 1,-0.0 30,-0.1 0.907 135.1 19.9-103.1 -51.8 2.3 45.1 45.6 66 55 B C T 4 S- 0 0 65 2,-0.1 -2,-0.1 30,-0.0 3,-0.1 0.444 90.4-132.4-101.8 -5.4 1.9 42.1 43.3 67 56 B E < + 0 0 143 -4,-1.3 -3,-0.1 1,-0.2 3,-0.1 0.433 55.1 145.9 74.7 -0.2 3.2 39.5 45.8 68 57 B K - 0 0 129 -6,-0.2 -5,-3.1 1,-0.1 -1,-0.2 -0.352 59.3 -88.7 -69.9 150.6 5.5 37.9 43.2 69 58 B L E -B 62 0B 18 -65,-0.3 2,-0.4 -7,-0.2 -7,-0.2 -0.396 41.5-164.6 -72.1 132.2 8.8 36.6 44.4 70 59 B V E -B 61 0B 11 -9,-2.8 -9,-2.0 -2,-0.2 2,-0.4 -0.941 2.2-157.4-117.9 131.0 11.8 38.9 44.5 71 60 B R E +B 60 0B 83 -2,-0.4 2,-0.3 -11,-0.2 -11,-0.2 -0.923 14.8 170.6-109.7 133.5 15.4 37.8 44.9 72 61 B L E -B 59 0B 79 -13,-2.4 -13,-2.9 -2,-0.4 2,-0.5 -0.985 26.3-136.5-129.9 148.7 18.3 39.9 46.1 73 62 B T E +B 58 0B 76 -2,-0.3 2,-0.3 -15,-0.2 -15,-0.2 -0.917 30.9 174.5 -93.8 137.2 21.8 39.1 47.0 74 63 B V E -B 57 0B 38 -17,-2.8 -17,-2.4 -2,-0.5 2,-0.5 -0.893 30.7-135.1-131.2 160.8 23.1 40.7 50.2 75 64 B L E +B 56 0B 115 -2,-0.3 2,-0.3 -19,-0.2 -21,-0.1 -0.983 42.9 158.9-111.3 124.1 26.2 40.4 52.3 76 65 B A E -B 55 0B 12 -21,-2.4 -21,-2.1 -2,-0.5 2,-0.1 -0.980 39.9-122.8-147.3 144.7 25.3 40.1 56.0 77 66 B D > - 0 0 76 -2,-0.3 4,-2.1 -23,-0.3 5,-0.2 -0.334 50.0 -91.8 -81.6 170.4 26.6 39.0 59.3 78 67 B H H > S+ 0 0 137 1,-0.2 4,-2.0 2,-0.2 5,-0.1 0.878 124.2 43.1 -57.2 -42.8 24.6 36.4 61.2 79 68 B S H > S+ 0 0 56 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.841 109.5 55.5 -74.4 -40.2 22.5 38.9 63.2 80 69 B A H > S+ 0 0 42 2,-0.2 4,-2.5 1,-0.2 -1,-0.2 0.888 110.1 48.9 -60.5 -36.7 21.8 41.2 60.3 81 70 B I H X S+ 0 0 29 -4,-2.1 4,-2.6 2,-0.2 -2,-0.2 0.944 110.8 47.6 -68.1 -47.7 20.4 38.2 58.4 82 71 B R H X S+ 0 0 144 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.914 115.2 48.5 -59.2 -38.5 18.2 37.0 61.3 83 72 B Q H X S+ 0 0 119 -4,-2.5 4,-2.5 2,-0.2 -2,-0.2 0.920 109.8 49.3 -68.7 -48.1 17.0 40.6 61.7 84 73 B L H X S+ 0 0 44 -4,-2.5 4,-1.9 1,-0.2 -1,-0.2 0.921 112.6 49.1 -59.3 -40.8 16.2 41.1 58.0 85 74 B E H X S+ 0 0 30 -4,-2.6 4,-0.6 1,-0.2 -2,-0.2 0.874 110.8 49.3 -67.4 -41.8 14.3 37.8 57.9 86 75 B E H >X S+ 0 0 125 -4,-2.3 3,-0.8 -5,-0.2 4,-0.5 0.883 110.9 52.2 -55.3 -44.8 12.3 38.8 61.1 87 76 B M H >X>S+ 0 0 75 -4,-2.5 5,-2.2 1,-0.2 3,-0.8 0.875 100.4 60.2 -64.6 -35.2 11.5 42.1 59.4 88 77 B L H 3<5S+ 0 0 25 -4,-1.9 -1,-0.2 1,-0.2 -2,-0.2 0.656 89.9 74.9 -73.3 -14.1 10.2 40.6 56.2 89 78 B L H <<5S- 0 0 151 -3,-0.8 -1,-0.2 -4,-0.6 -2,-0.2 0.946 129.6 -35.2 -50.8 -54.4 7.6 38.8 58.3 90 79 B R H <<5S+ 0 0 85 -3,-0.8 -2,-0.2 -4,-0.5 -3,-0.1 0.563 130.1 60.5-146.2 -40.1 5.5 41.9 58.8 91 80 B S T <5S+ 0 0 95 -4,-0.8 2,-0.4 -5,-0.4 -3,-0.2 0.653 103.5 37.5 -90.3 -19.2 7.4 45.1 59.2 92 81 B L < - 0 0 62 -5,-2.2 2,-0.4 -6,-0.1 -1,-0.1 -0.996 56.8-176.0-137.9 134.4 9.3 45.3 55.8 93 82 B N - 0 0 90 -2,-0.4 2,-0.2 -32,-0.0 -30,-0.1 -1.000 13.6-148.1-126.9 140.7 8.5 44.4 52.2 94 83 B I - 0 0 29 -2,-0.4 -30,-2.3 -32,-0.3 2,-0.4 -0.457 18.2-134.3 -94.1 171.6 10.7 44.6 49.2 95 84 B V - 0 0 42 -32,-0.3 -32,-0.1 -2,-0.2 -26,-0.0 -0.982 13.0-114.8-136.0 140.2 9.3 45.4 45.7 96 85 B C > - 0 0 6 -2,-0.4 4,-2.4 -28,-0.1 5,-0.2 -0.196 35.4-104.6 -74.3 163.9 9.9 43.8 42.3 97 86 B P H > S+ 0 0 102 0, 0.0 4,-2.2 0, 0.0 5,-0.2 0.904 119.4 46.2 -57.3 -40.0 11.6 45.7 39.5 98 87 B L H > S+ 0 0 112 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.934 113.5 46.1 -66.1 -52.6 8.3 46.3 37.6 99 88 B C H > S+ 0 0 7 2,-0.2 4,-0.6 1,-0.2 -1,-0.2 0.866 112.6 53.6 -62.4 -32.4 6.3 47.5 40.6 100 89 B T H >< S+ 0 0 80 -4,-2.4 3,-1.4 1,-0.2 -2,-0.2 0.974 111.8 42.8 -64.4 -48.2 9.3 49.7 41.6 101 90 B L H 3< S+ 0 0 157 -4,-2.2 -2,-0.2 1,-0.3 -1,-0.2 0.827 106.7 61.7 -74.5 -31.0 9.4 51.4 38.3 102 91 B Q H 3< 0 0 123 -4,-2.5 -1,-0.3 1,-0.2 -2,-0.2 0.714 360.0 360.0 -58.8 -26.0 5.6 51.8 38.0 103 92 B R << 0 0 162 -3,-1.4 -1,-0.2 -4,-0.6 -2,-0.2 0.428 360.0 360.0-110.8 360.0 5.8 53.9 41.2