==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 07-APR-98 1BA4 . COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR M.COLES,W.BICKNELL,A.A.WATSON,D.P.FAIRLIE,D.J.CRAIK . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3742.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 25 62.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 5.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 4 10.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 19 47.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 114 0, 0.0 2,-1.0 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0-171.9 2.1 -6.8 -10.4 2 2 A A - 0 0 55 1,-0.2 3,-0.3 4,-0.1 6,-0.1 -0.725 360.0-168.8 -84.2 103.5 1.1 -10.1 -11.9 3 3 A E S S- 0 0 93 -2,-1.0 -1,-0.2 1,-0.3 2,-0.1 0.732 86.0 -14.3 -63.3 -19.9 -0.8 -11.8 -9.1 4 4 A F S > S- 0 0 157 3,-0.1 3,-1.6 -3,-0.1 -1,-0.3 -0.476 134.2 -28.1 176.6 103.9 -0.5 -14.9 -11.4 5 5 A R T 3 S- 0 0 185 -3,-0.3 -2,-0.1 1,-0.3 -3,-0.0 0.914 115.6 -61.0 41.6 61.3 0.5 -14.6 -15.1 6 6 A H T 3 S- 0 0 128 1,-0.1 -1,-0.3 2,-0.0 -4,-0.1 0.739 86.5-178.7 38.8 35.2 -1.0 -11.1 -15.4 7 7 A D < - 0 0 69 -3,-1.6 -4,-0.3 1,-0.1 -1,-0.1 -0.136 30.0 -99.0 -59.1 155.0 -4.4 -12.4 -14.5 8 8 A S + 0 0 113 -6,-0.1 -1,-0.1 -5,-0.1 3,-0.0 -0.342 60.7 131.9 -73.1 157.4 -7.5 -10.1 -14.4 9 9 A G - 0 0 52 -2,-0.1 3,-0.2 3,-0.0 -6,-0.1 0.106 34.9-165.0 152.6 84.6 -8.6 -8.8 -11.0 10 10 A Y - 0 0 183 1,-0.2 2,-1.9 6,-0.0 6,-0.2 0.747 27.7-168.5 -54.1 -25.2 -9.4 -5.1 -10.4 11 11 A E - 0 0 71 5,-0.1 -1,-0.2 4,-0.1 2,-0.2 -0.498 51.4 -18.6 69.6 -78.7 -9.3 -6.0 -6.7 12 12 A V S S- 0 0 51 -2,-1.9 -3,-0.0 -3,-0.2 5,-0.0 -0.678 79.8 -77.0-139.9-166.9 -10.7 -2.8 -5.2 13 13 A H S S- 0 0 165 -2,-0.2 -1,-0.1 1,-0.1 4,-0.0 0.999 104.0 -36.0 -63.4 -74.9 -11.5 0.9 -6.0 14 14 A H S >> S+ 0 0 119 2,-0.1 4,-1.8 -3,-0.1 3,-0.7 0.364 117.7 91.3-133.6 -4.2 -8.0 2.5 -5.7 15 15 A Q H 3> S+ 0 0 91 1,-0.3 4,-2.7 2,-0.2 5,-0.2 0.797 81.8 68.0 -64.2 -23.7 -6.4 0.6 -2.8 16 16 A K H 3> S+ 0 0 52 1,-0.2 4,-2.3 2,-0.2 -1,-0.3 0.919 100.5 45.5 -60.6 -43.1 -5.1 -1.6 -5.7 17 17 A L H <> S+ 0 0 99 -3,-0.7 4,-2.9 2,-0.2 -2,-0.2 0.925 109.1 56.0 -67.4 -43.7 -2.9 1.4 -6.8 18 18 A V H X S+ 0 0 63 -4,-1.8 4,-2.0 1,-0.2 -2,-0.2 0.953 110.2 45.0 -52.5 -52.1 -1.8 2.0 -3.2 19 19 A F H X S+ 0 0 80 -4,-2.7 4,-2.5 1,-0.2 -1,-0.2 0.931 110.0 55.3 -58.0 -46.6 -0.6 -1.7 -2.9 20 20 A F H X S+ 0 0 112 -4,-2.3 4,-2.7 1,-0.2 -1,-0.2 0.945 105.6 52.5 -52.0 -51.9 1.0 -1.3 -6.4 21 21 A A H X S+ 0 0 48 -4,-2.9 4,-2.9 1,-0.2 -1,-0.2 0.910 108.7 49.9 -52.4 -46.8 3.0 1.7 -5.1 22 22 A E H X S+ 0 0 109 -4,-2.0 4,-2.4 2,-0.2 5,-0.3 0.954 109.8 51.1 -57.6 -49.6 4.2 -0.3 -2.1 23 23 A D H X S+ 0 0 53 -4,-2.5 4,-2.9 1,-0.2 -2,-0.2 0.938 112.3 47.3 -49.6 -53.3 5.3 -3.1 -4.4 24 24 A V H X S+ 0 0 72 -4,-2.7 4,-2.0 1,-0.2 -1,-0.2 0.927 108.6 54.4 -54.1 -53.3 7.2 -0.6 -6.5 25 25 A G H < S+ 0 0 51 -4,-2.9 4,-0.3 1,-0.2 -1,-0.2 0.923 115.5 37.8 -49.9 -54.5 8.8 1.0 -3.4 26 26 A S H >X S+ 0 0 85 -4,-2.4 3,-2.1 1,-0.2 4,-0.5 0.954 109.7 62.0 -64.5 -51.4 10.3 -2.3 -2.2 27 27 A N H 3X S+ 0 0 70 -4,-2.9 4,-2.7 -5,-0.3 3,-0.5 0.816 83.8 79.4 -41.9 -45.5 11.1 -3.6 -5.7 28 28 A K H 3X S+ 0 0 138 -4,-2.0 4,-2.5 1,-0.2 -1,-0.3 0.779 89.0 56.4 -36.6 -39.6 13.5 -0.7 -6.2 29 29 A G H <> S+ 0 0 48 -3,-2.1 4,-2.0 -4,-0.3 -1,-0.2 0.986 112.2 38.8 -61.4 -58.1 16.1 -2.6 -4.1 30 30 A A H X S+ 0 0 65 -4,-0.5 4,-2.8 -3,-0.5 -2,-0.2 0.900 113.1 59.4 -58.4 -40.9 16.1 -5.7 -6.3 31 31 A I H X S+ 0 0 74 -4,-2.7 4,-2.6 2,-0.2 -1,-0.2 0.943 104.8 47.5 -53.6 -54.3 15.8 -3.5 -9.4 32 32 A I H X S+ 0 0 82 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.939 110.6 53.2 -54.9 -47.6 19.1 -1.7 -8.6 33 33 A G H X S+ 0 0 37 -4,-2.0 4,-2.8 1,-0.2 -1,-0.2 0.935 109.9 47.7 -53.0 -49.6 20.7 -5.2 -8.0 34 34 A L H < S+ 0 0 129 -4,-2.8 -1,-0.2 2,-0.2 -2,-0.2 0.932 109.3 53.1 -58.0 -48.6 19.5 -6.4 -11.5 35 35 A M H < S+ 0 0 141 -4,-2.6 -1,-0.2 1,-0.2 -2,-0.2 0.926 111.9 46.1 -52.0 -49.7 20.8 -3.2 -13.2 36 36 A V H < S- 0 0 84 -4,-2.5 -1,-0.2 -5,-0.2 -2,-0.2 0.950 124.9-102.4 -58.0 -53.2 24.2 -3.8 -11.6 37 37 A G >< - 0 0 19 -4,-2.8 3,-1.5 -5,-0.2 -2,-0.1 -0.190 10.2-112.2 131.1 137.9 24.1 -7.5 -12.6 38 38 A G T 3 S+ 0 0 82 1,-0.3 -1,-0.1 -4,-0.2 -4,-0.1 0.906 123.5 40.2 -59.8 -43.4 23.5 -10.7 -10.7 39 39 A V T 3 0 0 154 -3,-0.1 -1,-0.3 0, 0.0 -2,-0.0 -0.114 360.0 360.0 -96.8 33.6 27.1 -11.8 -11.2 40 40 A V < 0 0 149 -3,-1.5 -3,-0.1 -7,-0.1 -4,-0.1 -0.998 360.0 360.0-136.9 360.0 28.2 -8.2 -10.5