==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 22-APR-98 1BA6 . COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR A.A.WATSON,D.P.FAIRLIE,D.J.CRAIK . 40 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3978.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 40.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 20.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 177 0, 0.0 3,-0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 147.9 1.4 -13.9 11.8 2 2 A A + 0 0 57 1,-0.1 2,-0.3 0, 0.0 0, 0.0 0.947 360.0 166.1 65.3 53.4 -0.7 -11.3 10.0 3 3 A E + 0 0 121 2,-0.0 -1,-0.1 0, 0.0 0, 0.0 -0.151 20.1 160.0 -89.1 38.9 -4.1 -12.7 11.0 4 4 A F - 0 0 117 -2,-0.3 0, 0.0 1,-0.1 0, 0.0 -0.280 28.9-173.4 -64.7 148.7 -5.8 -9.5 9.9 5 5 A R + 0 0 166 2,-0.0 2,-0.3 1,-0.0 -1,-0.1 -0.276 32.8 139.8-137.2 43.6 -9.5 -9.5 9.1 6 6 A H + 0 0 45 9,-0.1 2,-0.2 5,-0.0 8,-0.1 -0.019 28.3 158.9 -81.6 33.1 -10.0 -6.0 7.7 7 7 A D - 0 0 97 -2,-0.3 3,-0.5 1,-0.1 6,-0.1 -0.404 34.4-133.0 -62.4 124.7 -12.3 -7.4 5.1 8 8 A S S S+ 0 0 34 -2,-0.2 2,-0.8 1,-0.2 4,-0.2 0.198 76.8 76.8 -65.9-169.9 -14.6 -4.7 3.7 9 9 A G S S+ 0 0 83 2,-0.9 -1,-0.2 1,-0.1 4,-0.1 -0.472 119.4 27.3 100.2 -57.8 -18.4 -4.9 3.1 10 10 A Y S S+ 0 0 236 -2,-0.8 2,-0.3 -3,-0.5 -2,-0.1 -0.273 131.6 47.7-124.5 36.6 -19.0 -4.3 6.9 11 11 A E S S- 0 0 90 -5,-0.1 -2,-0.9 0, 0.0 -5,-0.0 -0.961 100.5 -69.5-168.5 162.1 -15.7 -2.5 7.1 12 12 A V - 0 0 98 -2,-0.3 -2,-0.1 -4,-0.2 3,-0.0 -0.209 32.6-136.3 -61.0 151.8 -13.7 0.3 5.3 13 13 A H S S+ 0 0 137 1,-0.2 2,-0.2 -5,-0.1 3,-0.2 -0.053 75.8 108.2-100.0 28.7 -12.3 -0.4 1.9 14 14 A H >> + 0 0 80 1,-0.2 3,-1.2 2,-0.1 4,-0.5 -0.282 28.2 144.0-100.9 46.2 -9.0 1.3 2.7 15 15 A Q H 3> + 0 0 51 1,-0.2 4,-0.6 -2,-0.2 -1,-0.2 0.539 64.3 69.8 -62.4 -4.5 -7.2 -2.1 2.8 16 16 A K H 3> S+ 0 0 128 -3,-0.2 4,-2.9 2,-0.1 -1,-0.2 0.873 80.4 71.8 -80.7 -41.8 -4.2 -0.1 1.3 17 17 A L H <4 S+ 0 0 102 -3,-1.2 4,-0.3 1,-0.2 5,-0.2 0.842 93.3 55.8 -41.3 -49.8 -3.5 1.9 4.5 18 18 A V H >X S+ 0 0 44 -4,-0.5 4,-2.6 1,-0.2 3,-1.5 0.962 114.5 36.7 -51.8 -60.8 -2.0 -1.1 6.3 19 19 A F H 3X>S+ 0 0 103 -4,-0.6 4,-3.2 1,-0.3 5,-0.5 0.918 104.1 71.2 -60.2 -44.9 0.6 -1.9 3.6 20 20 A F H 3<5S+ 0 0 158 -4,-2.9 -1,-0.3 1,-0.2 -2,-0.2 0.532 114.7 27.5 -49.6 -8.7 1.2 1.8 3.0 21 21 A A H <>5S+ 0 0 57 -3,-1.5 4,-2.2 -4,-0.3 3,-0.3 0.634 119.6 52.6-118.2 -53.5 2.9 1.8 6.4 22 22 A E H X5S+ 0 0 109 -4,-2.6 4,-2.5 1,-0.2 -2,-0.2 0.858 110.0 50.9 -54.9 -38.3 4.1 -1.8 6.8 23 23 A D H <5S+ 0 0 64 -4,-3.2 -1,-0.2 2,-0.2 7,-0.2 0.852 106.3 53.6 -69.1 -38.0 5.9 -1.6 3.4 24 24 A V H >4 S- 0 0 68 -5,-0.0 3,-2.3 0, 0.0 4,-0.2 -0.141 74.0 -83.0-163.7 43.1 13.2 -2.4 -0.3 29 29 A G T 3 S- 0 0 71 1,-0.3 5,-0.1 2,-0.1 -2,-0.1 0.732 73.5 -85.4 54.5 20.8 13.4 0.5 -2.8 30 30 A A T >> S+ 0 0 24 -7,-0.2 4,-2.4 1,-0.1 3,-2.1 0.673 88.1 145.8 55.2 20.7 9.9 -0.6 -3.7 31 31 A I T <4 + 0 0 110 -3,-2.3 -1,-0.1 1,-0.3 -2,-0.1 0.783 54.4 81.0 -55.3 -27.0 11.5 -3.1 -6.1 32 32 A I T 34 S+ 0 0 146 1,-0.2 -1,-0.3 -4,-0.2 -2,-0.1 0.769 112.8 17.9 -50.3 -30.5 8.6 -5.4 -5.2 33 33 A G T <4 S- 0 0 51 -3,-2.1 -2,-0.2 0, 0.0 -1,-0.2 0.695 86.7-159.9-109.3 -39.7 6.5 -3.4 -7.8 34 34 A L S < S+ 0 0 104 -4,-2.4 -3,-0.1 1,-0.1 -4,-0.1 0.809 81.3 70.0 57.8 32.9 9.4 -1.8 -9.7 35 35 A X + 0 0 187 -5,-0.4 -1,-0.1 3,-0.0 -4,-0.1 -0.017 51.7 131.0-165.4 32.7 7.0 0.8 -10.9 36 36 A V S S- 0 0 103 -6,-0.2 -6,-0.1 1,-0.1 -5,-0.0 0.884 87.1 -92.0 -60.1 -42.4 6.2 2.8 -7.7 37 37 A G S S+ 0 0 77 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.530 113.3 68.7 128.8 36.1 6.9 6.1 -9.6 38 38 A G + 0 0 58 -8,-0.1 -3,-0.0 0, 0.0 -4,-0.0 -0.085 44.0 135.2-171.1 49.7 10.6 6.6 -8.9 39 39 A V 0 0 76 1,-0.2 -9,-0.0 -5,-0.1 -10,-0.0 -0.135 360.0 360.0 -97.1 34.2 12.5 4.0 -10.8 40 40 A V 0 0 210 -3,-0.0 -1,-0.2 0, 0.0 0, 0.0 -0.443 360.0 360.0 56.7 360.0 14.9 6.7 -12.0