==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 17-APR-98 1BAJ . COMPND 2 MOLECULE: GAG POLYPROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR D.K.WORTHYLAKE,H.WANG,S.YOO,W.I.SUNDQUIST,C.P.HILL . 71 1 1 1 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4938.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 46 64.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 9.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 34 47.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 1 0 1 1 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 148 A T > 0 0 147 0, 0.0 3,-0.6 0, 0.0 24,-0.0 0.000 360.0 360.0 360.0 79.8 27.4 40.5 -3.5 2 149 A S G > + 0 0 64 1,-0.2 3,-2.4 2,-0.1 4,-0.3 0.300 360.0 108.6 -85.6 3.7 25.1 40.6 -0.5 3 150 A I G > + 0 0 5 1,-0.3 3,-1.4 2,-0.2 -1,-0.2 0.777 66.0 72.3 -53.3 -25.8 24.6 36.8 -0.9 4 151 A L G < S+ 0 0 114 -3,-0.6 -1,-0.3 1,-0.3 -2,-0.1 0.794 93.0 53.6 -60.7 -28.6 26.8 36.6 2.3 5 152 A D G < S+ 0 0 131 -3,-2.4 2,-1.3 1,-0.1 -1,-0.3 0.499 78.4 101.0 -88.9 -4.4 23.9 38.0 4.4 6 153 A I < + 0 0 22 -3,-1.4 2,-0.3 -4,-0.3 40,-0.1 -0.711 54.9 161.9 -82.9 96.2 21.4 35.4 3.2 7 154 A R - 0 0 150 -2,-1.3 2,-0.3 38,-0.0 40,-0.2 -0.871 43.0-102.4-117.5 153.4 21.5 33.1 6.3 8 155 A Q - 0 0 20 38,-3.0 6,-0.1 -2,-0.3 -2,-0.0 -0.569 37.9-122.0 -77.2 130.8 19.1 30.4 7.6 9 156 A G - 0 0 19 -2,-0.3 39,-0.2 4,-0.1 3,-0.2 -0.232 26.5-106.9 -65.3 159.5 16.9 31.5 10.5 10 157 A P S S+ 0 0 115 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.846 119.2 13.5 -57.2 -36.0 17.1 29.5 13.8 11 158 A K S S+ 0 0 195 2,-0.1 -2,-0.0 37,-0.0 3,-0.0 0.214 97.1 129.4-124.4 11.1 13.7 27.9 13.1 12 159 A E - 0 0 39 -3,-0.2 2,-0.2 1,-0.1 36,-0.1 -0.433 65.7-110.9 -69.4 136.2 13.3 28.9 9.5 13 160 A P > - 0 0 70 0, 0.0 4,-2.3 0, 0.0 3,-0.2 -0.526 20.1-126.1 -70.0 138.6 12.3 26.1 7.2 14 161 A F H > S+ 0 0 12 1,-0.2 4,-3.2 2,-0.2 5,-0.2 0.852 111.4 58.4 -50.0 -39.9 15.1 25.1 4.8 15 162 A R H > S+ 0 0 132 2,-0.2 4,-2.3 1,-0.2 -1,-0.2 0.958 106.4 46.1 -55.3 -54.6 12.7 25.5 1.9 16 163 A D H > S+ 0 0 60 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.890 113.7 50.7 -56.6 -41.7 12.0 29.2 2.9 17 164 A Y H X S+ 0 0 0 -4,-2.3 4,-1.0 1,-0.2 -1,-0.2 0.914 109.1 50.5 -62.6 -44.4 15.8 29.6 3.2 18 165 A V H X S+ 0 0 11 -4,-3.2 4,-2.0 1,-0.2 -2,-0.2 0.849 106.6 55.3 -64.1 -35.1 16.4 28.1 -0.2 19 166 A D H X S+ 0 0 87 -4,-2.3 4,-0.9 1,-0.2 -1,-0.2 0.919 111.0 43.5 -63.9 -44.9 13.8 30.4 -1.8 20 167 A R H X S+ 0 0 93 -4,-1.7 4,-0.7 2,-0.2 -1,-0.2 0.598 111.4 55.6 -75.0 -18.3 15.6 33.6 -0.5 21 168 A F H X S+ 0 0 0 -4,-1.0 4,-1.3 -3,-0.2 -2,-0.2 0.940 112.7 39.1 -78.3 -51.7 19.0 32.2 -1.4 22 169 A Y H X S+ 0 0 36 -4,-2.0 4,-1.0 1,-0.2 -2,-0.2 0.603 111.4 58.1 -74.2 -17.0 18.2 31.6 -5.1 23 170 A K H X S+ 0 0 143 -4,-0.9 4,-1.8 2,-0.2 -1,-0.2 0.859 106.8 49.2 -79.0 -36.4 16.1 34.8 -5.5 24 171 A T H X S+ 0 0 24 -4,-0.7 4,-2.1 1,-0.2 -2,-0.2 0.819 108.3 53.6 -68.5 -37.0 19.2 36.9 -4.3 25 172 A L H <>S+ 0 0 5 -4,-1.3 5,-2.5 2,-0.2 -1,-0.2 0.853 105.0 54.4 -69.0 -32.8 21.3 35.1 -6.9 26 173 A R H ><5S+ 0 0 164 -4,-1.0 3,-2.5 3,-0.2 -2,-0.2 0.971 108.8 48.0 -62.8 -53.1 18.9 36.0 -9.7 27 174 A A H 3<5S+ 0 0 82 -4,-1.8 -2,-0.2 1,-0.3 -1,-0.2 0.910 110.4 50.8 -53.1 -45.0 19.2 39.6 -8.8 28 175 A E T 3<5S- 0 0 65 -4,-2.1 -1,-0.3 -5,-0.1 -2,-0.2 0.316 114.4-125.7 -79.3 14.2 22.9 39.3 -8.7 29 176 A Q T < 5 - 0 0 177 -3,-2.5 -3,-0.2 1,-0.2 -2,-0.1 0.664 39.0-175.8 47.9 31.4 22.6 37.7 -12.1 30 177 A A < - 0 0 26 -5,-2.5 -1,-0.2 1,-0.1 2,-0.1 -0.199 21.6-124.3 -56.3 137.7 24.5 34.6 -11.2 31 178 A S > - 0 0 58 1,-0.1 4,-2.9 4,-0.0 3,-0.4 -0.350 27.3-103.9 -77.1 165.9 25.1 32.1 -14.1 32 179 A Q H > S+ 0 0 123 1,-0.3 4,-1.4 2,-0.2 -1,-0.1 0.839 126.2 54.1 -60.5 -31.0 23.9 28.5 -13.9 33 180 A E H > S+ 0 0 132 2,-0.2 4,-1.5 1,-0.2 -1,-0.3 0.845 109.3 46.3 -70.7 -35.7 27.6 27.6 -13.3 34 181 A V H > S+ 0 0 61 -3,-0.4 4,-2.1 1,-0.2 -2,-0.2 0.870 109.0 56.5 -72.1 -36.8 27.8 30.1 -10.4 35 182 A K H X S+ 0 0 69 -4,-2.9 4,-1.0 1,-0.2 -2,-0.2 0.821 105.2 53.0 -63.5 -29.9 24.5 28.7 -9.1 36 183 A N H X S+ 0 0 80 -4,-1.4 4,-1.1 -5,-0.2 3,-0.2 0.922 109.8 45.0 -70.9 -47.1 26.2 25.2 -9.0 37 184 A W H X S+ 0 0 170 -4,-1.5 4,-0.6 1,-0.2 3,-0.4 0.901 109.9 55.3 -65.0 -40.8 29.2 26.3 -7.0 38 185 A M H <>S+ 0 0 34 -4,-2.1 5,-3.3 1,-0.2 6,-0.4 0.785 104.8 53.7 -63.5 -31.3 27.1 28.3 -4.5 39 186 A T H <5S+ 0 0 16 -4,-1.0 5,-0.3 -3,-0.2 -1,-0.2 0.825 109.7 46.8 -72.0 -34.0 24.9 25.3 -3.7 40 187 A E H <5S+ 0 0 87 -4,-1.1 -1,-0.2 -3,-0.4 -2,-0.2 0.520 133.9 13.0 -82.7 -11.0 27.9 23.1 -2.9 41 188 A T T X5S+ 0 0 62 -4,-0.6 4,-2.9 -5,-0.1 3,-0.4 0.513 127.6 31.2-127.0 -87.1 29.3 25.8 -0.7 42 189 A L H >5S+ 0 0 24 1,-0.2 4,-2.8 2,-0.2 -3,-0.2 0.830 116.8 55.4 -51.2 -44.7 27.4 29.0 0.4 43 190 A L H 44 S+ 0 0 18 -6,-0.4 3,-0.9 -3,-0.4 -2,-0.2 0.902 116.8 47.0 -69.0 -43.6 25.5 24.7 2.9 45 192 A Q H 3< S+ 0 0 106 -4,-2.9 -2,-0.2 1,-0.2 -1,-0.2 0.804 108.9 52.3 -73.6 -28.2 27.6 27.2 4.9 46 193 A N T 3< S+ 0 0 5 -4,-2.8 -38,-3.0 -5,-0.2 -1,-0.2 0.200 89.6 104.6 -92.2 16.7 24.8 29.8 5.6 47 194 A A S < S- 0 0 7 -3,-0.9 -3,-0.0 -40,-0.2 -33,-0.0 -0.533 82.6 -85.7 -91.9 163.6 22.4 27.2 6.9 48 195 A N > - 0 0 25 -39,-0.2 4,-3.6 -2,-0.2 5,-0.3 -0.210 48.0 -95.8 -66.6 159.5 21.5 26.7 10.6 49 196 A P H > S+ 0 0 100 0, 0.0 4,-1.3 0, 0.0 -1,-0.1 0.797 121.9 45.9 -41.6 -45.8 23.7 24.5 12.9 50 197 A D H > S+ 0 0 122 2,-0.2 4,-2.3 3,-0.1 3,-0.3 0.978 118.3 39.3 -67.3 -56.6 21.6 21.4 12.5 51 198 A a H > S+ 0 0 4 1,-0.2 4,-3.9 2,-0.2 5,-0.4 0.930 113.9 55.7 -59.1 -46.8 21.1 21.5 8.7 52 199 A K H X S+ 0 0 70 -4,-3.6 4,-1.6 1,-0.3 -1,-0.2 0.840 110.3 46.8 -54.4 -35.9 24.6 22.6 8.2 53 200 A T H X S+ 0 0 98 -4,-1.3 4,-0.7 -5,-0.3 -1,-0.3 0.876 114.5 45.7 -75.2 -37.5 25.7 19.5 10.1 54 201 A I H >X S+ 0 0 71 -4,-2.3 4,-1.6 2,-0.2 3,-1.0 0.967 115.4 46.1 -69.4 -49.8 23.3 17.3 8.1 55 202 A L H 3X S+ 0 0 6 -4,-3.9 4,-0.8 1,-0.3 -2,-0.2 0.827 110.9 52.7 -60.6 -36.7 24.3 18.8 4.8 56 203 A K H 3< S+ 0 0 149 -4,-1.6 -1,-0.3 -5,-0.4 -2,-0.2 0.693 109.5 51.5 -71.5 -20.0 28.0 18.5 5.8 57 204 A A H << S+ 0 0 82 -3,-1.0 -2,-0.2 -4,-0.7 -1,-0.2 0.771 98.8 64.0 -85.1 -29.1 27.3 14.9 6.5 58 205 A L H < S- 0 0 77 -4,-1.6 -2,-0.2 1,-0.1 -1,-0.2 0.737 107.6-125.6 -64.4 -28.0 25.7 14.3 3.0 59 206 A G < - 0 0 28 -4,-0.8 2,-0.6 3,-0.1 3,-0.4 0.090 29.8 -58.5 97.4 152.7 29.0 15.0 1.4 60 207 A P S S+ 0 0 139 0, 0.0 -20,-0.1 0, 0.0 -19,-0.0 -0.576 118.8 46.4 -70.7 116.1 30.2 17.4 -1.4 61 208 A G S S+ 0 0 55 -2,-0.6 2,-0.4 1,-0.2 -21,-0.1 0.649 72.5 145.6 123.3 33.4 28.2 16.6 -4.4 62 209 A A - 0 0 6 -3,-0.4 -1,-0.2 -7,-0.1 -3,-0.1 -0.814 46.2-121.0-103.0 139.9 24.5 16.4 -3.3 63 210 A T > - 0 0 73 -2,-0.4 4,-1.9 1,-0.1 3,-0.3 -0.293 27.7-111.8 -69.9 160.1 21.6 17.5 -5.3 64 211 A L H > S+ 0 0 58 1,-0.2 4,-2.2 2,-0.2 5,-0.2 0.879 119.2 56.6 -62.4 -36.1 19.3 20.2 -4.0 65 212 A E H > S+ 0 0 152 1,-0.2 4,-1.9 2,-0.2 -1,-0.2 0.860 106.2 51.4 -65.5 -31.4 16.5 17.7 -3.6 66 213 A E H > S+ 0 0 85 -3,-0.3 4,-2.6 1,-0.2 -1,-0.2 0.921 109.3 49.1 -69.4 -40.9 18.8 15.6 -1.4 67 214 A M H X S+ 0 0 5 -4,-1.9 4,-0.9 2,-0.2 -2,-0.2 0.872 111.1 49.9 -65.5 -38.8 19.7 18.6 0.8 68 215 A M H >< S+ 0 0 72 -4,-2.2 3,-0.6 2,-0.2 -1,-0.2 0.909 110.6 49.2 -65.1 -45.5 16.0 19.5 1.2 69 216 A T H 3< S+ 0 0 111 -4,-1.9 -2,-0.2 1,-0.2 -1,-0.2 0.957 107.3 56.3 -57.9 -49.0 15.1 15.9 2.2 70 217 A A H 3< 0 0 26 -4,-2.6 -1,-0.2 -5,-0.2 -2,-0.2 0.717 360.0 360.0 -57.4 -23.9 18.0 15.9 4.7 71 218 A a << 0 0 64 -4,-0.9 -3,-0.1 -3,-0.6 -4,-0.0 0.053 360.0 360.0-119.3 360.0 16.5 19.0 6.4