==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 17-OCT-05 2BBL . COMPND 2 MOLECULE: GENOME LINKED PROTEIN VPG; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.H.SCHEIN,N.OEZGUEN . 22 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2148.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 22.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 1 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 3 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 61 0, 0.0 9,-0.2 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 -76.8 -0.7 -8.1 -2.5 2 2 A A - 0 0 12 1,-0.1 10,-0.2 7,-0.1 0, 0.0 -0.150 360.0 -97.8 -71.7 172.0 0.6 -4.9 -1.1 3 3 A Y S S+ 0 0 79 8,-0.2 -1,-0.1 1,-0.1 9,-0.1 0.799 122.4 9.3 -61.1 -30.0 -1.1 -1.5 -1.8 4 4 A T S S- 0 0 70 12,-0.1 -1,-0.1 13,-0.0 8,-0.0 0.738 96.1-123.3-114.2 -54.5 1.5 -1.0 -4.6 5 5 A G S S+ 0 0 30 -4,-0.0 -2,-0.0 0, 0.0 -3,-0.0 0.163 79.8 111.0 124.4 -13.3 3.4 -4.2 -5.0 6 6 A L S S+ 0 0 139 1,-0.2 0, 0.0 2,-0.0 0, 0.0 0.961 95.7 23.3 -52.7 -59.0 6.8 -2.9 -4.4 7 7 A P S S- 0 0 57 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.897 97.9-154.6 -75.0 -43.5 7.2 -4.8 -1.1 8 8 A N + 0 0 108 3,-0.1 -2,-0.0 2,-0.0 -5,-0.0 0.897 36.2 140.1 64.7 102.7 4.6 -7.4 -2.0 9 9 A K - 0 0 151 2,-0.2 3,-0.1 1,-0.0 -7,-0.1 0.414 58.3-104.4-131.9 -83.8 3.1 -8.9 1.2 10 10 A K S S+ 0 0 175 1,-0.7 2,-0.0 -9,-0.2 -2,-0.0 -0.092 86.5 68.7-179.0 -64.0 -0.7 -9.6 1.3 11 11 A P - 0 0 98 0, 0.0 -1,-0.7 0, 0.0 -8,-0.2 -0.269 48.4-177.9 -75.0 164.2 -2.6 -7.0 3.3 12 12 A N + 0 0 83 -10,-0.2 -10,-0.0 -3,-0.1 0, 0.0 -0.469 12.3 169.8-166.5 83.3 -3.1 -3.4 2.2 13 13 A V S S+ 0 0 151 -2,-0.1 -1,-0.1 2,-0.0 2,-0.0 0.954 71.2 59.9 -61.6 -52.4 -5.0 -1.1 4.5 14 14 A P S S- 0 0 26 0, 0.0 3,-0.1 0, 0.0 0, 0.0 -0.282 79.6-135.2 -75.0 163.2 -4.1 2.0 2.5 15 15 A T S S+ 0 0 122 1,-0.4 2,-0.3 -2,-0.0 3,-0.0 0.739 87.6 0.1 -88.4 -27.6 -5.0 2.5 -1.1 16 16 A I >> - 0 0 67 1,-0.1 3,-1.7 -12,-0.0 4,-0.6 -0.933 57.0-134.4-163.5 138.3 -1.5 3.8 -2.1 17 17 A R H 3> S+ 0 0 114 -2,-0.3 4,-1.7 1,-0.3 3,-0.4 0.702 103.2 75.2 -66.0 -19.6 1.7 4.4 -0.2 18 18 A T H 3> S+ 0 0 78 1,-0.2 4,-2.4 2,-0.2 -1,-0.3 0.747 87.3 61.6 -63.5 -24.0 1.8 7.7 -2.0 19 19 A A H <4 S+ 0 0 54 -3,-1.7 -1,-0.2 2,-0.2 -2,-0.2 0.906 103.0 47.7 -68.3 -43.2 -0.8 8.8 0.4 20 20 A K H < S+ 0 0 161 -4,-0.6 -2,-0.2 -3,-0.4 -1,-0.2 0.865 113.0 49.5 -64.9 -37.1 1.5 8.3 3.3 21 21 A V H < 0 0 109 -4,-1.7 -2,-0.2 1,-0.2 -1,-0.2 0.893 360.0 360.0 -68.1 -41.2 4.2 10.2 1.4 22 22 A Q < 0 0 203 -4,-2.4 -2,-0.2 -5,-0.1 -1,-0.2 0.858 360.0 360.0 -67.7 360.0 1.8 13.0 0.6