==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=22-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 17-OCT-05 2BBP . COMPND 2 MOLECULE: GENOME LINKED PROTEIN VPG; . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.H.SCHEIN,N.OEZGUEN . 22 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2099.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 3 13.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 1 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A G 0 0 91 0, 0.0 17,-0.1 0, 0.0 16,-0.1 0.000 360.0 360.0 360.0-110.4 9.9 8.6 4.0 2 2 A A - 0 0 38 15,-0.5 15,-0.2 14,-0.3 16,-0.2 0.209 360.0-170.6-157.4 -61.2 8.2 7.0 1.0 3 3 A Y + 0 0 145 14,-1.9 2,-0.4 13,-0.7 14,-0.2 0.947 20.0 172.3 49.4 91.5 4.5 7.0 1.2 4 4 A T + 0 0 70 1,-0.3 13,-0.2 0, 0.0 9,-0.2 -0.987 44.5 20.4-133.1 141.5 3.3 4.8 -1.6 5 5 A G + 0 0 38 -2,-0.4 -1,-0.3 1,-0.1 11,-0.2 0.952 56.0 162.0 67.4 93.1 -0.1 3.5 -2.6 6 6 A L + 0 0 112 -3,-0.1 -1,-0.1 4,-0.1 4,-0.1 -0.421 17.7 139.4-139.7 59.0 -2.8 5.7 -1.0 7 7 A P S S- 0 0 104 0, 0.0 -1,-0.1 0, 0.0 3,-0.1 0.695 98.1 -36.8 -75.0 -20.4 -5.9 4.9 -3.0 8 8 A N S S- 0 0 134 -3,-0.1 2,-0.3 0, 0.0 -2,-0.1 0.175 122.4 -15.5-167.3 -46.9 -7.9 4.9 0.3 9 9 A K S S- 0 0 128 -4,-0.0 -3,-0.1 6,-0.0 6,-0.0 -0.893 99.9 -47.9-173.3 143.1 -5.8 3.4 3.0 10 10 A K + 0 0 102 -2,-0.3 -4,-0.1 1,-0.1 -5,-0.1 0.238 62.6 178.5 -17.7 96.7 -2.7 1.3 3.4 11 11 A P S S- 0 0 62 0, 0.0 -1,-0.1 0, 0.0 -6,-0.1 0.987 74.0 -15.3 -75.0 -73.5 -3.7 -1.3 0.8 12 12 A N S S+ 0 0 161 -7,-0.1 -2,-0.1 3,-0.0 -7,-0.1 0.705 120.2 90.3-102.7 -31.0 -0.8 -3.7 0.7 13 13 A V S S- 0 0 24 -9,-0.2 3,-0.1 -8,-0.2 8,-0.1 -0.143 79.8-125.1 -62.8 163.1 1.7 -1.5 2.5 14 14 A P S S- 0 0 60 0, 0.0 2,-0.2 0, 0.0 -1,-0.1 0.962 89.6 -15.3 -75.0 -56.4 2.1 -1.7 6.3 15 15 A T S > S- 0 0 60 5,-0.1 4,-0.6 -6,-0.0 3,-0.4 -0.617 115.5 -56.0-154.8 86.6 1.5 2.0 7.1 16 16 A I T 4 S- 0 0 45 1,-0.2 -13,-0.7 -11,-0.2 -14,-0.3 0.871 99.4 -71.2 42.2 45.8 1.8 4.5 4.2 17 17 A R T 4 S+ 0 0 107 -14,-0.2 -14,-1.9 -13,-0.2 -15,-0.5 0.891 119.5 98.1 34.9 73.5 5.2 3.0 3.6 18 18 A T T 4 S+ 0 0 81 -3,-0.4 3,-0.3 -16,-0.2 -2,-0.1 0.388 74.6 47.9-150.4 -36.1 6.7 4.6 6.8 19 19 A A S < S+ 0 0 70 -4,-0.6 2,-0.3 1,-0.2 3,-0.1 0.952 132.7 9.0 -78.5 -55.7 6.7 1.9 9.4 20 20 A K + 0 0 163 1,-0.1 -1,-0.2 2,-0.1 -3,-0.1 -0.717 67.0 162.2-129.8 80.2 8.2 -0.9 7.4 21 21 A V 0 0 72 -2,-0.3 -1,-0.1 -3,-0.3 -2,-0.1 0.871 360.0 360.0 -64.1 -38.1 9.4 0.5 4.1 22 22 A Q 0 0 232 -3,-0.1 -1,-0.2 0, 0.0 -2,-0.1 0.871 360.0 360.0 -68.4 360.0 11.6 -2.6 3.6