==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 05-MAY-98 1BC7 . COMPND 2 MOLECULE: DNA (5'-D(*GP*AP*CP*AP*GP*GP*AP*TP*GP*TP*G)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.MO,B.VAESSEN,K.JOHNSTON,R.MARMORSTEIN . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5960.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 69 74.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 12 12.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 8.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 0 0 0 0 1 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 C M 0 0 225 0, 0.0 2,-0.7 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -59.4 -2.3 5.1 -6.4 2 2 C D > - 0 0 100 1,-0.2 3,-0.9 2,-0.1 0, 0.0 -0.419 360.0-176.8 -61.8 105.1 -3.0 3.1 -3.2 3 3 C S T 3 S+ 0 0 78 -2,-0.7 -1,-0.2 1,-0.2 0, 0.0 0.469 71.3 76.5 -85.3 0.6 -1.4 5.2 -0.4 4 4 C A T 3 + 0 0 79 2,-0.0 -1,-0.2 0, 0.0 -2,-0.1 0.545 65.8 132.9 -84.7 -8.7 -2.2 2.7 2.2 5 5 C I < - 0 0 11 -3,-0.9 2,-0.2 43,-0.1 3,-0.0 -0.020 52.0-133.1 -42.4 143.2 0.7 0.5 1.1 6 6 C T > - 0 0 56 1,-0.1 4,-2.1 0, 0.0 5,-0.1 -0.573 19.2-111.3 -97.1 167.1 2.9 -0.8 3.9 7 7 C L H > S+ 0 0 5 2,-0.2 4,-2.5 -2,-0.2 5,-0.2 0.899 116.0 50.3 -66.2 -42.3 6.7 -0.7 3.9 8 8 C W H > S+ 0 0 43 2,-0.2 4,-2.2 1,-0.2 -1,-0.2 0.914 111.1 48.4 -64.9 -40.5 7.1 -4.4 3.6 9 9 C Q H > S+ 0 0 68 1,-0.2 4,-2.5 2,-0.2 -1,-0.2 0.939 112.9 49.2 -62.8 -46.2 4.7 -4.7 0.7 10 10 C F H X S+ 0 0 14 -4,-2.1 4,-1.9 1,-0.2 -2,-0.2 0.880 111.1 48.8 -59.3 -43.0 6.5 -1.8 -1.0 11 11 C L H X S+ 0 0 0 -4,-2.5 4,-2.2 2,-0.2 -1,-0.2 0.879 109.7 52.9 -66.7 -35.9 9.9 -3.5 -0.5 12 12 C L H X S+ 0 0 8 -4,-2.2 4,-1.1 1,-0.2 -2,-0.2 0.933 107.9 51.0 -63.4 -45.2 8.5 -6.7 -1.8 13 13 C Q H X S+ 0 0 64 -4,-2.5 4,-0.6 1,-0.2 -1,-0.2 0.870 110.1 49.8 -59.3 -39.2 7.4 -4.8 -4.9 14 14 C L H >< S+ 0 0 16 -4,-1.9 3,-0.8 1,-0.2 6,-0.3 0.887 109.3 50.4 -67.4 -41.2 10.8 -3.3 -5.4 15 15 C L H 3< S+ 0 0 11 -4,-2.2 -1,-0.2 1,-0.2 11,-0.2 0.680 102.7 64.1 -70.9 -17.5 12.6 -6.7 -5.1 16 16 C Q H 3< S+ 0 0 134 -4,-1.1 -1,-0.2 -3,-0.2 -2,-0.2 0.696 89.6 71.7 -79.1 -22.9 10.1 -8.1 -7.7 17 17 C K X< - 0 0 81 -3,-0.8 3,-2.4 -4,-0.6 4,-0.2 -0.866 69.4-156.1 -99.0 112.1 11.4 -5.9 -10.5 18 18 C P G > S+ 0 0 83 0, 0.0 3,-1.3 0, 0.0 4,-0.2 0.685 91.2 72.1 -59.1 -16.1 14.9 -7.0 -11.6 19 19 C Q G 3 S+ 0 0 140 1,-0.3 3,-0.3 2,-0.1 -4,-0.1 0.558 93.0 56.2 -76.2 -6.3 15.4 -3.4 -12.8 20 20 C N G X> S+ 0 0 26 -3,-2.4 4,-2.1 -6,-0.3 3,-1.7 0.350 71.4 107.1-102.6 1.8 15.7 -2.4 -9.2 21 21 C K T <4 + 0 0 114 -3,-1.3 -1,-0.2 1,-0.3 -2,-0.1 0.749 67.6 71.4 -51.9 -26.5 18.5 -4.8 -8.5 22 22 C H T 34 S+ 0 0 110 -3,-0.3 -1,-0.3 1,-0.2 3,-0.1 0.888 113.0 21.5 -59.3 -41.9 20.8 -1.8 -8.3 23 23 C M T <4 S+ 0 0 15 -3,-1.7 14,-2.4 1,-0.3 13,-0.8 0.742 133.2 19.7-101.6 -26.7 19.3 -0.6 -5.0 24 24 C I E < +A 35 0A 2 -4,-2.1 2,-0.3 11,-0.3 -1,-0.3 -0.972 66.1 163.9-150.2 130.6 17.7 -3.7 -3.4 25 25 C C E -A 34 0A 27 9,-1.8 9,-2.7 -2,-0.3 2,-0.1 -0.990 40.2-101.4-148.1 155.2 18.3 -7.4 -4.0 26 26 C W E -A 33 0A 78 -2,-0.3 7,-0.3 7,-0.2 3,-0.1 -0.480 26.9-174.3 -70.2 142.7 17.7 -10.9 -2.6 27 27 C T + 0 0 66 5,-2.3 2,-0.3 -2,-0.1 6,-0.2 0.168 67.2 24.4-125.0 13.8 20.8 -12.2 -1.0 28 28 C S S S- 0 0 34 4,-0.7 3,-0.5 0, 0.0 -1,-0.1 -0.962 76.3-113.5-164.2 169.1 19.4 -15.7 -0.2 29 29 C N S S+ 0 0 152 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 0.198 107.9 62.6 -97.0 15.0 16.8 -18.2 -1.3 30 30 C D S S- 0 0 61 2,-0.1 57,-0.3 58,-0.0 -1,-0.2 0.090 125.2 -76.2-127.3 25.1 14.9 -17.8 2.0 31 31 C G S S+ 0 0 0 -3,-0.5 53,-2.3 1,-0.3 2,-0.3 0.492 80.7 138.7 99.5 1.0 13.9 -14.1 2.2 32 32 C Q E + B 0 83A 45 51,-0.3 -5,-2.3 49,-0.1 -4,-0.7 -0.609 26.3 175.5 -79.7 142.6 17.1 -12.3 3.0 33 33 C F E -AB 26 82A 0 49,-3.0 49,-2.5 -7,-0.3 2,-0.4 -0.978 21.1-140.3-145.9 155.9 17.6 -9.0 1.1 34 34 C K E -AB 25 81A 72 -9,-2.7 -9,-1.8 -2,-0.3 2,-1.4 -0.958 14.2-137.3-122.6 139.0 20.0 -6.1 1.1 35 35 C L E > +A 24 0A 0 45,-2.2 3,-0.8 -2,-0.4 -11,-0.3 -0.744 28.3 177.1 -91.8 86.0 19.4 -2.4 0.7 36 36 C L T 3 S+ 0 0 69 -2,-1.4 2,-0.4 -13,-0.8 -12,-0.2 0.873 83.3 25.6 -57.8 -41.7 22.3 -1.8 -1.7 37 37 C Q T 3> S+ 0 0 79 -14,-2.4 4,-2.0 -3,-0.2 3,-0.4 -0.723 78.8 172.5-125.1 75.5 21.3 1.8 -2.1 38 38 C A H <> S+ 0 0 9 -3,-0.8 4,-2.3 -2,-0.4 5,-0.2 0.863 77.7 48.2 -53.1 -47.6 19.5 2.4 1.2 39 39 C E H > S+ 0 0 100 1,-0.2 4,-1.5 2,-0.2 -1,-0.3 0.795 111.1 54.2 -68.1 -25.5 19.0 6.2 0.9 40 40 C E H > S+ 0 0 45 -3,-0.4 4,-1.7 2,-0.2 -2,-0.2 0.874 109.4 45.1 -74.2 -40.7 17.8 5.5 -2.6 41 41 C V H X S+ 0 0 0 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.886 111.9 53.3 -69.7 -37.8 15.1 3.1 -1.5 42 42 C A H X S+ 0 0 0 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.868 106.9 53.1 -63.5 -36.2 14.2 5.5 1.3 43 43 C R H X S+ 0 0 138 -4,-1.5 4,-2.0 1,-0.2 -1,-0.2 0.913 110.0 46.9 -64.6 -44.1 13.7 8.2 -1.3 44 44 C L H X S+ 0 0 55 -4,-1.7 4,-2.3 2,-0.2 -2,-0.2 0.874 110.1 53.6 -65.6 -38.5 11.4 6.0 -3.3 45 45 C W H X S+ 0 0 16 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.913 108.9 49.4 -62.6 -44.6 9.4 5.1 -0.1 46 46 C G H X>S+ 0 0 2 -4,-2.3 5,-2.9 2,-0.2 4,-1.1 0.912 110.4 49.0 -62.3 -43.7 8.9 8.8 0.7 47 47 C I H <5S+ 0 0 120 -4,-2.0 3,-0.4 3,-0.2 -1,-0.2 0.924 111.4 52.2 -61.5 -41.9 7.7 9.6 -2.8 48 48 C R H <5S+ 0 0 58 -4,-2.3 -1,-0.2 1,-0.2 -2,-0.2 0.848 120.7 31.2 -61.7 -37.9 5.3 6.7 -2.5 49 49 C K H <5S- 0 0 85 -4,-2.0 -1,-0.2 -5,-0.1 -2,-0.2 0.400 112.1-116.3-100.9 0.8 3.9 7.9 0.8 50 50 C N T <5S+ 0 0 124 -4,-1.1 -3,-0.2 -3,-0.4 -4,-0.1 0.961 73.0 133.6 59.4 54.2 4.4 11.5 -0.0 51 51 C K > < - 0 0 115 -5,-2.9 3,-2.4 -8,-0.1 -1,-0.2 -0.690 33.7-174.8-131.3 74.1 6.8 12.1 2.8 52 52 C P T 3 S+ 0 0 106 0, 0.0 -5,-0.1 0, 0.0 -6,-0.1 0.664 79.1 58.7 -45.0 -26.9 9.5 14.1 0.9 53 53 C N T 3 S+ 0 0 133 -7,-0.1 -10,-0.1 -3,-0.1 2,-0.0 0.244 75.9 131.1 -93.3 14.9 11.8 14.1 3.9 54 54 C M < + 0 0 38 -3,-2.4 2,-0.3 -11,-0.1 -8,-0.1 -0.376 27.2 161.6 -68.9 144.4 12.0 10.3 4.2 55 55 C N > - 0 0 51 -13,-0.0 4,-2.6 -2,-0.0 3,-0.5 -0.892 54.6 -86.9-150.0 178.0 15.5 8.8 4.5 56 56 C Y H > S+ 0 0 29 -2,-0.3 4,-3.3 1,-0.2 5,-0.3 0.863 119.8 64.6 -63.1 -35.6 17.2 5.6 5.7 57 57 C D H > S+ 0 0 114 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.903 115.1 31.6 -51.6 -43.7 17.3 6.7 9.3 58 58 C K H > S+ 0 0 97 -3,-0.5 4,-1.6 2,-0.2 -2,-0.2 0.814 116.8 54.4 -86.7 -34.0 13.5 6.7 9.3 59 59 C L H X S+ 0 0 0 -4,-2.6 4,-1.5 1,-0.2 -2,-0.2 0.925 110.0 49.9 -66.5 -40.2 12.9 3.9 6.9 60 60 C S H X S+ 0 0 3 -4,-3.3 4,-1.8 1,-0.2 -1,-0.2 0.836 106.1 55.0 -67.1 -32.1 15.1 1.6 9.1 61 61 C R H X S+ 0 0 102 -4,-0.8 4,-1.1 -5,-0.3 -1,-0.2 0.867 105.9 52.9 -67.3 -34.5 13.2 2.6 12.2 62 62 C A H < S+ 0 0 31 -4,-1.6 4,-0.3 1,-0.2 -1,-0.2 0.858 109.3 49.1 -65.8 -35.9 10.0 1.5 10.4 63 63 C L H >X S+ 0 0 0 -4,-1.5 3,-1.1 1,-0.2 4,-0.6 0.813 103.2 61.1 -72.8 -32.2 11.7 -1.8 9.8 64 64 C R H >< S+ 0 0 105 -4,-1.8 3,-0.7 1,-0.3 4,-0.4 0.812 96.9 59.7 -64.7 -28.1 12.7 -2.1 13.4 65 65 C Y T 3X S+ 0 0 138 -4,-1.1 4,-0.7 1,-0.2 -1,-0.3 0.685 95.7 64.2 -71.7 -19.0 9.1 -2.1 14.4 66 66 C Y H <>>S+ 0 0 17 -3,-1.1 5,-1.8 -4,-0.3 4,-0.8 0.761 81.6 79.1 -76.4 -26.6 8.6 -5.2 12.3 67 67 C Y H X<5S+ 0 0 68 -3,-0.7 3,-0.8 -4,-0.6 -1,-0.2 0.895 100.6 37.3 -47.4 -52.5 10.9 -7.3 14.5 68 68 C V H 345S+ 0 0 123 -4,-0.4 -1,-0.2 -3,-0.2 -2,-0.2 0.793 112.4 59.6 -72.8 -28.4 8.2 -7.8 17.2 69 69 C K H 3<5S- 0 0 132 -4,-0.7 -1,-0.2 3,-0.1 -2,-0.2 0.551 106.4-130.6 -75.5 -7.5 5.5 -8.1 14.5 70 70 C N T <<5S+ 0 0 100 -4,-0.8 16,-0.3 -3,-0.8 -3,-0.2 0.779 77.5 112.5 63.2 26.9 7.5 -11.1 13.1 71 71 C I S - 0 0 24 6,-2.3 3,-1.9 3,-0.3 6,-0.3 -0.877 37.5-127.4 -99.9 100.9 20.4 -10.2 9.6 76 76 C N T 3 S+ 0 0 144 -2,-1.0 3,-0.1 1,-0.3 6,-0.0 -0.181 83.8 11.6 -53.3 134.3 22.9 -9.4 12.4 77 77 C G T 3 S+ 0 0 88 1,-0.1 2,-0.7 4,-0.0 -1,-0.3 0.349 100.9 108.3 80.6 -5.2 26.4 -8.3 11.4 78 78 C Q S X S- 0 0 91 -3,-1.9 3,-2.5 3,-0.2 -3,-0.3 -0.847 71.8-128.1-112.2 99.5 25.3 -7.7 7.8 79 79 C K T 3 S- 0 0 157 -2,-0.7 3,-0.1 1,-0.3 -44,-0.1 -0.157 88.1 -6.0 -47.1 118.0 25.0 -4.0 6.9 80 80 C F T 3 S+ 0 0 53 1,-0.2 -45,-2.2 -46,-0.1 2,-0.5 0.555 101.4 130.5 71.7 11.7 21.7 -3.2 5.3 81 81 C V E < +B 34 0A 9 -3,-2.5 -6,-2.3 -6,-0.3 2,-0.2 -0.852 25.1 160.8-103.2 128.1 20.6 -6.8 5.2 82 82 C Y E -BC 33 74A 5 -49,-2.5 -49,-3.0 -2,-0.5 2,-0.4 -0.759 24.6-136.1-130.3 176.4 17.2 -7.9 6.6 83 83 C K E -BC 32 73A 49 -10,-2.7 -10,-2.8 -51,-0.3 2,-0.7 -0.999 15.8-125.0-144.7 138.2 15.0 -10.9 6.2 84 84 C F E - C 0 72A 0 -53,-2.3 3,-0.5 -2,-0.4 -12,-0.3 -0.732 28.4-146.2 -78.2 118.4 11.4 -11.6 5.6 85 85 C V S S+ 0 0 48 -14,-1.9 2,-1.0 -2,-0.7 -1,-0.2 0.937 88.0 38.4 -53.2 -56.9 10.6 -13.9 8.5 86 86 C S S > S- 0 0 51 -15,-0.4 4,-2.2 -16,-0.3 -1,-0.2 -0.663 92.0-162.4-101.5 79.3 7.9 -16.1 6.7 87 87 C Y T 4 + 0 0 59 -2,-1.0 -55,-0.0 -3,-0.5 -58,-0.0 -0.887 65.1 8.2-108.9 140.9 9.3 -16.5 3.2 88 88 C P T >> S+ 0 0 67 0, 0.0 4,-1.6 0, 0.0 3,-1.2 -0.945 116.0 76.2 -86.4 10.2 7.9 -17.4 0.6 89 89 C E T 34 S+ 0 0 113 1,-0.3 -2,-0.2 2,-0.2 -3,-0.0 0.917 94.0 52.1 -45.4 -55.8 4.6 -17.2 2.4 90 90 C I T >< S+ 0 0 19 -4,-2.2 3,-0.7 1,-0.2 -1,-0.3 0.780 106.4 57.8 -53.9 -29.1 4.4 -13.4 2.3 91 91 C L T <4 S+ 0 0 69 -3,-1.2 2,-2.2 1,-0.3 -1,-0.2 0.994 106.0 44.7 -65.2 -63.4 5.1 -13.6 -1.5 92 92 C N T 3< 0 0 162 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.1 -0.321 360.0 360.0 -79.8 56.3 2.1 -15.8 -2.4 93 93 C M < 0 0 153 -2,-2.2 -1,-0.2 -3,-0.7 -2,-0.2 0.437 360.0 360.0-142.5 360.0 -0.2 -13.7 -0.2