==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 05-MAY-98 1BC8 . COMPND 2 MOLECULE: DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.MO,B.VAESSEN,K.JOHNSTON,R.MARMORSTEIN . 93 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6129.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 64 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 11 11.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 14 15.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 31 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 1 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 C M 0 0 227 0, 0.0 2,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 58.4 -14.7 12.7 7.7 2 2 C D - 0 0 99 1,-0.1 2,-0.3 47,-0.1 47,-0.2 -0.245 360.0 -71.6 -95.6-174.0 -11.4 10.9 7.3 3 3 C S - 0 0 46 45,-1.2 -1,-0.1 1,-0.1 0, 0.0 -0.670 28.7-146.8 -83.4 135.8 -10.6 7.5 5.7 4 4 C A + 0 0 105 -2,-0.3 -1,-0.1 -3,-0.1 45,-0.1 0.359 56.5 136.6 -80.7 5.5 -11.8 4.5 7.7 5 5 C I - 0 0 18 43,-0.1 2,-0.2 1,-0.1 -2,-0.1 -0.211 53.0-131.3 -56.9 142.0 -8.7 2.7 6.3 6 6 C T > - 0 0 47 1,-0.1 4,-1.9 0, 0.0 5,-0.1 -0.488 20.4-115.5 -87.6 162.0 -6.7 0.6 8.7 7 7 C L H > S+ 0 0 7 1,-0.2 4,-2.0 2,-0.2 5,-0.2 0.913 116.6 47.3 -70.3 -39.9 -2.9 1.0 8.9 8 8 C W H > S+ 0 0 21 1,-0.2 4,-1.5 2,-0.2 -1,-0.2 0.798 113.5 50.2 -71.1 -22.4 -2.1 -2.4 7.7 9 9 C Q H > S+ 0 0 73 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.841 108.2 52.6 -79.2 -35.2 -4.6 -1.9 4.9 10 10 C F H X S+ 0 0 5 -4,-1.9 4,-2.0 2,-0.2 -2,-0.2 0.874 109.6 48.6 -66.4 -39.2 -3.0 1.4 4.0 11 11 C L H X S+ 0 0 0 -4,-2.0 4,-2.4 1,-0.2 -2,-0.2 0.916 109.8 52.2 -67.0 -42.4 0.4 -0.3 3.8 12 12 C L H < S+ 0 0 18 -4,-1.5 4,-0.5 1,-0.2 -2,-0.2 0.852 107.7 53.8 -60.9 -35.1 -1.2 -3.0 1.6 13 13 C Q H >X S+ 0 0 101 -4,-1.8 3,-1.1 2,-0.2 4,-0.6 0.933 109.5 45.2 -66.7 -45.5 -2.5 -0.2 -0.6 14 14 C L H >< S+ 0 0 12 -4,-2.0 3,-0.9 1,-0.3 6,-0.4 0.875 108.6 58.2 -64.3 -38.1 0.9 1.5 -1.1 15 15 C L T 3< S+ 0 0 17 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.609 100.5 58.7 -68.0 -12.2 2.4 -2.0 -1.8 16 16 C Q T <4 S+ 0 0 131 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.690 95.7 70.7 -90.8 -19.8 -0.0 -2.4 -4.7 17 17 C K X< - 0 0 101 -3,-0.9 3,-2.3 -4,-0.6 4,-0.2 -0.874 67.8-149.8-107.6 123.4 1.1 0.7 -6.6 18 18 C P G > S+ 0 0 102 0, 0.0 3,-2.0 0, 0.0 4,-0.4 0.796 94.5 74.2 -54.3 -30.9 4.5 0.8 -8.4 19 19 C Q G 3 S+ 0 0 122 1,-0.3 3,-0.2 2,-0.1 -5,-0.1 0.724 100.0 43.5 -56.4 -24.0 4.5 4.6 -7.8 20 20 C N G X> S+ 0 0 25 -3,-2.3 4,-2.3 -6,-0.4 3,-1.6 0.301 79.8 102.5-106.2 7.0 5.2 3.9 -4.1 21 21 C K T <4 S+ 0 0 122 -3,-2.0 15,-0.2 1,-0.3 -1,-0.2 0.815 76.8 61.6 -59.4 -30.9 7.9 1.2 -4.6 22 22 C H T 34 S+ 0 0 98 -4,-0.4 -1,-0.3 -3,-0.2 3,-0.1 0.713 115.1 32.0 -69.9 -19.2 10.6 3.8 -3.8 23 23 C M T <4 S+ 0 0 8 -3,-1.6 14,-2.2 1,-0.3 2,-0.3 0.669 134.8 13.1-109.5 -23.1 9.1 4.3 -0.3 24 24 C I S < S+ 0 0 1 -4,-2.3 -1,-0.3 11,-0.3 2,-0.3 -0.912 71.0 168.8-155.9 123.8 7.8 0.8 0.5 25 25 C C E -A 34 0A 14 9,-2.0 9,-2.6 -2,-0.3 2,-0.3 -0.944 37.8-104.2-138.1 158.1 8.5 -2.4 -1.3 26 26 C W E -A 33 0A 70 -2,-0.3 7,-0.3 7,-0.2 3,-0.1 -0.612 26.1-175.3 -79.0 140.9 8.0 -6.2 -1.0 27 27 C T + 0 0 64 5,-2.6 2,-0.3 -2,-0.3 6,-0.2 0.269 67.5 25.0-118.7 5.8 11.2 -8.0 -0.0 28 28 C S S S- 0 0 35 4,-1.0 3,-0.4 0, 0.0 -1,-0.1 -0.959 73.4-117.4-157.9 170.2 9.9 -11.5 -0.2 29 29 C N S S+ 0 0 163 -2,-0.3 -3,-0.0 1,-0.2 0, 0.0 0.022 106.2 60.3-102.1 23.5 7.1 -13.6 -1.8 30 30 C D S S- 0 0 74 2,-0.1 57,-0.4 58,-0.0 -1,-0.2 0.057 128.2 -69.0-139.1 29.7 5.6 -14.4 1.5 31 31 C G S S+ 0 0 0 -3,-0.4 53,-2.0 1,-0.3 2,-0.2 0.317 84.3 136.3 105.7 -9.0 4.5 -11.1 3.1 32 32 C Q E + B 0 83A 40 51,-0.3 -5,-2.6 55,-0.1 -4,-1.0 -0.522 24.7 168.1 -76.6 135.8 7.9 -9.4 3.9 33 33 C F E -AB 26 82A 0 49,-2.7 49,-2.7 -7,-0.3 2,-0.4 -0.957 22.9-142.1-144.9 162.0 8.2 -5.7 3.1 34 34 C K E -AB 25 81A 53 -9,-2.6 -9,-2.0 -2,-0.3 2,-1.6 -0.993 15.7-134.8-133.9 133.3 10.5 -2.8 3.8 35 35 C L > + 0 0 1 45,-2.5 3,-0.8 -2,-0.4 -11,-0.3 -0.666 27.4 176.8 -83.7 86.9 9.8 0.9 4.5 36 36 C L T 3 S+ 0 0 69 -2,-1.6 2,-0.4 1,-0.3 -1,-0.2 0.885 84.5 27.4 -58.5 -41.3 12.5 2.3 2.2 37 37 C Q T 3> S+ 0 0 98 -14,-2.2 4,-2.3 -3,-0.2 -1,-0.3 -0.731 77.8 172.7-124.0 77.6 11.3 5.8 3.0 38 38 C A H <> S+ 0 0 9 -3,-0.8 4,-1.9 -2,-0.4 -1,-0.1 0.842 77.5 45.4 -55.5 -45.6 9.8 5.4 6.5 39 39 C E H > S+ 0 0 91 2,-0.2 4,-2.0 1,-0.2 -1,-0.2 0.813 111.8 53.5 -71.6 -31.2 9.2 9.1 7.2 40 40 C E H > S+ 0 0 60 2,-0.2 4,-1.9 1,-0.2 -2,-0.2 0.921 109.6 47.4 -69.4 -41.0 7.7 9.6 3.8 41 41 C V H X S+ 0 0 1 -4,-2.3 4,-1.8 -18,-0.2 -2,-0.2 0.898 111.9 52.5 -64.1 -39.1 5.2 6.7 4.4 42 42 C A H X S+ 0 0 0 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.875 107.4 49.6 -65.1 -40.1 4.4 8.2 7.8 43 43 C R H X S+ 0 0 145 -4,-2.0 4,-1.9 2,-0.2 -1,-0.2 0.907 110.6 51.5 -65.4 -39.6 3.6 11.6 6.4 44 44 C L H X S+ 0 0 44 -4,-1.9 4,-1.8 1,-0.2 -2,-0.2 0.854 109.9 49.7 -63.9 -36.9 1.4 9.9 3.8 45 45 C W H X S+ 0 0 15 -4,-1.8 4,-2.5 2,-0.2 -1,-0.2 0.894 109.3 51.4 -69.8 -40.8 -0.4 8.0 6.6 46 46 C G H X>S+ 0 0 3 -4,-2.3 5,-3.0 2,-0.2 4,-0.9 0.847 108.5 51.2 -65.8 -33.7 -0.9 11.2 8.6 47 47 C I H <5S+ 0 0 124 -4,-1.9 3,-0.3 3,-0.2 -1,-0.2 0.928 111.5 48.5 -68.0 -42.9 -2.4 12.9 5.5 48 48 C R H <5S+ 0 0 111 -4,-1.8 -45,-1.2 1,-0.2 -2,-0.2 0.896 121.3 34.1 -63.0 -42.6 -4.8 10.0 5.1 49 49 C K H <5S- 0 0 68 -4,-2.5 -1,-0.2 -47,-0.2 -2,-0.2 0.443 112.1-115.7 -93.6 -1.9 -5.8 10.0 8.8 50 50 C N T <5S+ 0 0 121 -4,-0.9 -3,-0.2 -3,-0.3 -4,-0.1 0.885 71.2 134.9 69.2 39.8 -5.6 13.8 9.2 51 51 C K > < - 0 0 119 -5,-3.0 3,-2.4 -6,-0.2 -1,-0.2 -0.764 32.0-174.7-121.0 83.3 -2.7 13.7 11.7 52 52 C P T 3 S+ 0 0 113 0, 0.0 -1,-0.1 0, 0.0 -5,-0.1 0.643 82.2 55.4 -51.9 -21.0 -0.2 16.3 10.5 53 53 C N T 3 S+ 0 0 126 -7,-0.1 2,-0.1 2,-0.0 -10,-0.1 0.252 77.5 132.0-100.2 13.5 2.3 15.4 13.2 54 54 C M < + 0 0 36 -3,-2.4 2,-0.3 -11,-0.1 -8,-0.1 -0.376 27.7 163.1 -65.5 137.6 2.4 11.7 12.2 55 55 C N > - 0 0 54 -2,-0.1 4,-2.2 -13,-0.1 5,-0.2 -0.876 54.1 -91.4-145.3 177.9 5.9 10.3 11.9 56 56 C Y H > S+ 0 0 34 -2,-0.3 4,-2.8 1,-0.2 5,-0.2 0.811 118.1 65.4 -65.9 -29.3 7.7 7.0 11.7 57 57 C D H > S+ 0 0 104 1,-0.2 4,-1.1 2,-0.2 -1,-0.2 0.972 112.0 32.7 -54.9 -56.9 8.2 7.0 15.5 58 58 C K H > S+ 0 0 97 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.818 116.6 56.0 -71.7 -33.5 4.4 6.8 16.2 59 59 C L H X S+ 0 0 1 -4,-2.2 4,-1.9 1,-0.2 3,-0.2 0.931 106.5 51.7 -64.5 -42.5 3.6 4.7 13.1 60 60 C S H X S+ 0 0 8 -4,-2.8 4,-2.5 1,-0.2 -1,-0.2 0.849 104.2 57.2 -62.4 -33.5 6.1 2.1 14.2 61 61 C R H X S+ 0 0 101 -4,-1.1 4,-1.2 -5,-0.2 -1,-0.2 0.908 106.5 49.8 -64.2 -38.1 4.3 2.1 17.6 62 62 C A H X S+ 0 0 34 -4,-1.6 4,-0.6 1,-0.2 -2,-0.2 0.863 109.5 51.1 -65.7 -36.9 1.1 1.2 15.8 63 63 C L H >< S+ 0 0 0 -4,-1.9 3,-1.3 1,-0.2 4,-0.5 0.903 105.2 56.9 -67.0 -38.5 2.9 -1.6 14.0 64 64 C R H >X S+ 0 0 91 -4,-2.5 3,-0.9 1,-0.3 4,-0.6 0.811 99.5 58.9 -63.1 -28.2 4.2 -2.9 17.3 65 65 C Y H 3X S+ 0 0 133 -4,-1.2 4,-1.0 1,-0.2 3,-0.3 0.740 96.9 62.8 -71.5 -21.0 0.6 -3.2 18.5 66 66 C Y H S+ 0 0 15 -3,-1.3 5,-2.1 -4,-0.6 4,-1.0 0.674 86.5 73.1 -76.8 -17.2 0.1 -5.6 15.5 67 67 C Y H <45S+ 0 0 78 -3,-0.9 3,-0.3 -4,-0.5 -1,-0.2 0.922 100.9 43.2 -61.2 -44.2 2.6 -8.0 17.0 68 68 C V H <5S+ 0 0 122 -4,-0.6 -1,-0.2 -3,-0.3 -2,-0.2 0.875 114.3 50.2 -66.9 -40.6 0.1 -9.0 19.7 69 69 C K H <5S- 0 0 138 -4,-1.0 -1,-0.2 3,-0.1 -2,-0.2 0.599 107.1-129.3 -74.7 -12.6 -2.7 -9.1 17.1 70 70 C N T <5S+ 0 0 111 -4,-1.0 -3,-0.2 -3,-0.3 16,-0.2 0.856 76.9 115.7 65.0 35.6 -0.6 -11.3 14.9 71 71 C I S - 0 0 14 6,-1.9 3,-1.2 -2,-0.3 6,-0.3 -0.859 40.0-122.4 -90.9 106.8 11.9 -9.0 10.8 76 76 C N T 3 S+ 0 0 143 -2,-1.0 3,-0.0 1,-0.2 6,-0.0 -0.213 83.3 6.5 -56.2 134.4 14.6 -9.1 13.5 77 77 C G T 3 S+ 0 0 86 1,-0.1 2,-0.3 4,-0.0 -1,-0.2 0.739 101.1 106.0 67.5 26.1 17.9 -7.4 12.8 78 78 C Q S X S- 0 0 97 -3,-1.2 3,-2.3 3,-0.2 -3,-0.3 -0.800 71.2-128.1-139.1 93.3 16.7 -5.8 9.5 79 79 C K T 3 S- 0 0 173 -2,-0.3 3,-0.1 1,-0.3 -3,-0.0 -0.050 87.6 -0.8 -44.0 131.8 16.0 -2.0 9.8 80 80 C F T 3 S+ 0 0 69 1,-0.2 -45,-2.5 -46,-0.1 2,-0.5 0.473 100.9 127.9 64.1 6.7 12.6 -1.0 8.5 81 81 C V E < +B 34 0A 4 -3,-2.3 -6,-1.9 -6,-0.3 2,-0.3 -0.814 28.0 163.0-100.1 131.4 11.7 -4.6 7.5 82 82 C Y E -BC 33 74A 5 -49,-2.7 -49,-2.7 -2,-0.5 2,-0.4 -0.803 23.6-137.6-134.3 174.3 8.5 -6.1 8.6 83 83 C K E -BC 32 73A 47 -10,-2.5 -10,-2.5 -51,-0.3 2,-0.6 -0.995 15.8-126.7-144.4 134.6 6.4 -9.1 7.7 84 84 C F E > - C 0 72A 1 -53,-2.0 3,-0.7 -2,-0.4 -12,-0.3 -0.686 24.7-141.7 -76.7 121.6 2.7 -9.7 7.3 85 85 C V T 3 S+ 0 0 47 -14,-1.8 2,-0.3 -2,-0.6 -1,-0.2 0.930 91.0 12.1 -50.7 -52.9 2.0 -12.7 9.5 86 86 C S T 3> S- 0 0 70 -15,-0.5 4,-1.9 -16,-0.2 -1,-0.3 -0.704 86.4-163.6-133.3 82.9 -0.5 -14.2 7.0 87 87 C Y T <4 S+ 0 0 70 -3,-0.7 -55,-0.1 -57,-0.4 -3,-0.0 -0.914 75.6 8.3-105.3 132.9 -0.4 -12.5 3.6 88 88 C P T >> S+ 0 0 73 0, 0.0 3,-2.9 0, 0.0 4,-0.5 -0.912 112.7 79.6 -95.0 16.8 -2.6 -12.9 1.6 89 89 C E G >4 S+ 0 0 124 1,-0.3 3,-1.3 2,-0.2 -2,-0.2 0.849 88.8 63.2 -49.2 -36.3 -4.9 -14.7 4.0 90 90 C I G 3< S+ 0 0 25 -4,-1.9 -1,-0.3 1,-0.2 3,-0.2 0.543 97.5 58.6 -68.6 -5.8 -5.8 -11.3 5.5 91 91 C L G <4 S+ 0 0 102 -3,-2.9 2,-0.4 1,-0.2 -1,-0.2 0.565 99.6 54.4-101.1 -12.2 -7.3 -10.3 2.2 92 92 C N << 0 0 103 -3,-1.3 -1,-0.2 -4,-0.5 -2,-0.0 -0.686 360.0 360.0-118.9 74.7 -9.9 -13.1 1.9 93 93 C M 0 0 208 -2,-0.4 -1,-0.2 -3,-0.2 -2,-0.1 0.815 360.0 360.0 -73.3 360.0 -11.8 -12.6 5.2