==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PHOTORECEPTOR 07-JUL-93 1BCT . COMPND 2 MOLECULE: BACTERIORHODOPSIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; . AUTHOR D.E.NOLDE,I.L.BARSUKOV,A.L.LOMIZE,A.S.ARSENIEV . 69 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6560.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 87.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 7.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 54 78.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 1 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 163 A M 0 0 213 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 174.3 -17.7 7.2 11.5 2 164 A R - 0 0 153 2,-0.1 2,-1.8 0, 0.0 5,-0.1 -0.911 360.0-149.0-148.3 118.9 -19.2 7.6 8.0 3 165 A P + 0 0 122 0, 0.0 3,-0.0 0, 0.0 0, 0.0 -0.373 45.0 166.1 -79.4 57.9 -19.0 5.1 5.0 4 166 A E > - 0 0 80 -2,-1.8 4,-2.5 1,-0.1 5,-0.2 -0.159 52.5-114.7 -69.0 165.8 -19.1 8.0 2.5 5 167 A V H > S+ 0 0 129 2,-0.2 4,-2.1 1,-0.1 5,-0.2 0.952 123.1 44.4 -63.5 -50.1 -18.3 7.9 -1.2 6 168 A A H > S+ 0 0 54 2,-0.2 4,-2.5 1,-0.2 5,-0.3 0.960 112.3 53.8 -55.7 -53.3 -15.3 10.3 -0.5 7 169 A S H > S+ 0 0 38 1,-0.2 4,-2.4 2,-0.2 -2,-0.2 0.945 110.7 43.5 -47.0 -60.5 -14.4 8.2 2.6 8 170 A T H X S+ 0 0 88 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.868 112.2 54.4 -59.3 -40.4 -14.2 4.8 0.8 9 171 A F H X S+ 0 0 103 -4,-2.1 4,-2.1 -5,-0.2 -1,-0.2 0.964 111.0 44.3 -56.6 -53.9 -12.3 6.4 -2.2 10 172 A K H X S+ 0 0 128 -4,-2.5 4,-2.6 1,-0.2 -2,-0.2 0.905 111.4 54.2 -59.5 -44.0 -9.5 7.8 0.1 11 173 A V H X S+ 0 0 81 -4,-2.4 4,-2.5 -5,-0.3 -1,-0.2 0.931 107.3 51.7 -54.2 -48.6 -9.3 4.5 2.1 12 174 A L H X S+ 0 0 90 -4,-2.4 4,-2.5 1,-0.2 5,-0.2 0.963 110.7 47.2 -52.4 -56.1 -8.7 2.6 -1.2 13 175 A R H X S+ 0 0 124 -4,-2.1 4,-2.5 1,-0.2 5,-0.3 0.913 111.2 52.1 -54.3 -47.8 -5.9 5.0 -2.2 14 176 A N H X S+ 0 0 101 -4,-2.6 4,-2.5 2,-0.2 5,-0.2 0.969 111.6 45.7 -50.8 -58.2 -4.3 4.8 1.3 15 177 A V H X S+ 0 0 82 -4,-2.5 4,-2.6 1,-0.2 5,-0.2 0.923 113.6 48.8 -54.6 -50.8 -4.3 0.9 1.2 16 178 A T H X S+ 0 0 66 -4,-2.5 4,-2.5 -5,-0.2 -1,-0.2 0.931 112.4 47.2 -58.6 -49.0 -2.9 0.7 -2.4 17 179 A V H X S+ 0 0 88 -4,-2.5 4,-2.3 -5,-0.2 5,-0.2 0.932 113.2 49.0 -58.8 -48.3 -0.0 3.2 -1.7 18 180 A V H X S+ 0 0 79 -4,-2.5 4,-2.6 -5,-0.3 5,-0.2 0.963 111.5 49.0 -55.3 -53.4 1.0 1.4 1.6 19 181 A L H X S+ 0 0 111 -4,-2.6 4,-1.7 -5,-0.2 -2,-0.2 0.940 110.4 52.5 -51.8 -51.7 1.0 -2.0 -0.1 20 182 A W H >< S+ 0 0 189 -4,-2.5 3,-0.5 2,-0.2 -1,-0.2 0.932 112.0 43.0 -50.4 -56.2 3.1 -0.7 -3.0 21 183 A S H 3X S+ 0 0 63 -4,-2.3 4,-0.8 1,-0.2 -1,-0.2 0.910 115.1 50.6 -61.0 -42.8 5.9 0.8 -0.7 22 184 A A H 3X S+ 0 0 39 -4,-2.6 4,-2.7 -5,-0.2 5,-0.3 0.762 93.4 79.5 -62.2 -26.0 5.8 -2.3 1.5 23 185 A Y H S+ 0 0 73 0, 0.0 4,-2.6 0, 0.0 -1,-0.2 0.860 114.6 55.0 -60.5 -36.9 10.0 -4.2 -2.1 25 187 A V H X S+ 0 0 91 -4,-0.8 4,-2.1 2,-0.2 -2,-0.2 0.975 110.0 44.5 -58.6 -55.3 10.6 -4.4 1.7 26 188 A V H X S+ 0 0 94 -4,-2.7 4,-2.4 2,-0.2 -1,-0.2 0.902 112.8 53.3 -56.0 -45.6 8.7 -7.8 1.9 27 189 A W H < S+ 0 0 133 -4,-2.4 -2,-0.2 -5,-0.3 -1,-0.2 0.975 106.6 51.0 -51.5 -59.0 10.6 -9.0 -1.2 28 190 A L H >< S+ 0 0 83 -4,-2.6 3,-1.6 1,-0.2 -2,-0.2 0.884 109.3 51.3 -49.6 -47.2 14.0 -8.2 0.3 29 191 A I H >< S+ 0 0 120 -4,-2.1 3,-1.1 1,-0.3 -1,-0.2 0.973 112.3 46.2 -52.9 -55.6 13.1 -10.1 3.5 30 192 A G T 3< S+ 0 0 63 -4,-2.4 -1,-0.3 1,-0.2 -2,-0.2 0.037 120.7 40.5 -80.1 29.7 12.1 -13.1 1.4 31 193 A S T <> + 0 0 4 -3,-1.6 4,-1.4 3,-0.1 -1,-0.2 0.031 66.2 134.9-163.1 40.1 15.4 -12.8 -0.7 32 194 A E T <4 S+ 0 0 133 -3,-1.1 -2,-0.1 2,-0.2 -3,-0.1 0.982 94.9 15.7 -48.2 -65.4 18.2 -11.9 1.8 33 195 A G T >4 S+ 0 0 37 2,-0.1 3,-1.4 3,-0.1 4,-0.4 0.856 127.1 60.1 -77.4 -39.9 20.6 -14.5 0.3 34 196 A A T >4 S+ 0 0 78 1,-0.3 3,-0.6 2,-0.1 -2,-0.2 0.979 116.5 28.2 -55.9 -63.5 18.6 -14.9 -2.9 35 197 A G T 3X S+ 0 0 11 -4,-1.4 4,-0.9 1,-0.2 -1,-0.3 -0.036 88.5 113.4 -90.4 34.5 18.7 -11.3 -4.2 36 198 A I H <> + 0 0 72 -3,-1.4 4,-2.6 1,-0.2 5,-0.2 0.881 59.5 76.1 -67.6 -36.4 22.1 -10.7 -2.4 37 199 A V H <> S+ 0 0 93 -3,-0.6 4,-1.9 -4,-0.4 -1,-0.2 0.875 98.2 39.9 -44.9 -57.8 23.8 -10.2 -5.8 38 200 A P H > S+ 0 0 72 0, 0.0 4,-2.2 0, 0.0 -1,-0.2 0.893 113.4 56.2 -60.9 -41.4 22.5 -6.7 -6.5 39 201 A L H X S+ 0 0 92 -4,-0.9 4,-2.6 1,-0.2 -2,-0.2 0.960 107.1 49.2 -53.7 -52.5 23.0 -5.6 -2.9 40 202 A N H X S+ 0 0 81 -4,-2.6 4,-2.6 1,-0.2 -1,-0.2 0.918 108.3 53.8 -52.6 -50.6 26.7 -6.6 -3.1 41 203 A I H X S+ 0 0 115 -4,-1.9 4,-2.3 -5,-0.2 -1,-0.2 0.940 111.5 44.5 -51.7 -52.6 27.2 -4.6 -6.3 42 204 A E H X S+ 0 0 116 -4,-2.2 4,-2.6 2,-0.2 5,-0.2 0.943 111.6 52.7 -59.0 -49.7 25.8 -1.4 -4.7 43 205 A T H X S+ 0 0 76 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.918 110.0 49.2 -52.6 -47.8 27.8 -1.9 -1.5 44 206 A L H X S+ 0 0 102 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.962 110.5 49.7 -55.7 -54.8 31.0 -2.2 -3.5 45 207 A L H X S+ 0 0 84 -4,-2.3 4,-2.0 1,-0.2 -2,-0.2 0.939 111.9 48.4 -50.3 -53.5 30.3 0.9 -5.6 46 208 A F H X S+ 0 0 122 -4,-2.6 4,-2.5 1,-0.2 -1,-0.2 0.940 110.0 51.8 -52.7 -52.8 29.6 2.9 -2.4 47 209 A M H X S+ 0 0 117 -4,-2.5 4,-2.5 1,-0.2 -1,-0.2 0.904 106.7 53.3 -53.3 -48.1 32.8 1.7 -0.7 48 210 A V H X S+ 0 0 78 -4,-2.4 4,-2.3 2,-0.2 -1,-0.2 0.939 109.5 48.8 -53.4 -49.7 35.0 2.7 -3.8 49 211 A L H X S+ 0 0 93 -4,-2.0 4,-2.5 -5,-0.2 5,-0.2 0.950 109.4 52.9 -53.9 -51.1 33.5 6.3 -3.6 50 212 A D H X S+ 0 0 53 -4,-2.5 4,-2.4 1,-0.2 -2,-0.2 0.935 109.7 48.3 -50.4 -53.1 34.2 6.4 0.2 51 213 A V H X S+ 0 0 73 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.950 111.5 48.1 -54.2 -54.6 37.9 5.5 -0.4 52 214 A S H X S+ 0 0 74 -4,-2.3 4,-2.3 1,-0.2 -1,-0.2 0.917 112.2 49.8 -57.4 -45.4 38.5 8.0 -3.2 53 215 A A H X S+ 0 0 64 -4,-2.5 4,-2.6 -5,-0.2 -1,-0.2 0.933 109.4 51.6 -56.9 -49.9 36.9 10.9 -1.1 54 216 A K H X S+ 0 0 133 -4,-2.4 4,-2.3 -5,-0.2 -2,-0.2 0.920 109.5 49.8 -54.5 -48.6 39.1 10.0 2.0 55 217 A V H X S+ 0 0 89 -4,-2.3 4,-2.2 2,-0.2 -1,-0.2 0.953 110.7 49.9 -55.2 -51.9 42.3 10.1 -0.1 56 218 A G H X S+ 0 0 27 -4,-2.3 4,-2.4 1,-0.2 -2,-0.2 0.933 109.3 51.6 -52.5 -50.9 41.3 13.5 -1.6 57 219 A F H X S+ 0 0 139 -4,-2.6 4,-2.6 1,-0.2 -1,-0.2 0.922 108.0 52.5 -52.5 -49.7 40.6 14.9 1.9 58 220 A G H X S+ 0 0 30 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.947 109.1 49.1 -51.8 -52.9 44.0 13.8 3.1 59 221 A L H X S+ 0 0 98 -4,-2.2 4,-2.2 1,-0.2 -2,-0.2 0.930 110.9 50.2 -53.7 -50.6 45.8 15.6 0.2 60 222 A I H X S+ 0 0 91 -4,-2.4 4,-2.7 1,-0.2 -1,-0.2 0.939 109.5 51.1 -53.2 -51.5 43.8 18.8 0.9 61 223 A L H X S+ 0 0 103 -4,-2.6 4,-2.5 1,-0.2 5,-0.2 0.923 108.9 50.6 -54.2 -50.0 44.8 18.7 4.7 62 224 A L H X S+ 0 0 82 -4,-2.3 4,-2.0 1,-0.2 -1,-0.2 0.939 112.1 47.5 -53.3 -51.3 48.5 18.3 3.9 63 225 A R H X S+ 0 0 156 -4,-2.2 4,-2.4 -5,-0.2 5,-0.2 0.942 111.2 51.4 -55.1 -51.5 48.4 21.3 1.5 64 226 A S H X S+ 0 0 64 -4,-2.7 4,-2.4 1,-0.2 -2,-0.2 0.938 110.6 46.5 -53.7 -53.9 46.5 23.5 4.0 65 227 A R H X S+ 0 0 156 -4,-2.5 4,-2.4 1,-0.2 -1,-0.2 0.869 111.1 53.3 -61.7 -37.3 49.0 22.8 6.9 66 228 A A H < S+ 0 0 64 -4,-2.0 -1,-0.2 -5,-0.2 -2,-0.2 0.947 110.4 46.4 -60.0 -50.6 52.0 23.4 4.6 67 229 A I H < S+ 0 0 143 -4,-2.4 -2,-0.2 1,-0.2 -1,-0.2 0.908 112.3 51.7 -57.2 -46.6 50.6 26.8 3.5 68 230 A F H < 0 0 193 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.946 360.0 360.0 -56.3 -53.8 49.8 27.8 7.2 69 231 A G < 0 0 115 -4,-2.4 0, 0.0 -5,-0.2 0, 0.0 -0.102 360.0 360.0 -72.9 360.0 53.3 27.0 8.5