==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN/DNA 27-MAY-98 1BF4 . COMPND 2 MOLECULE: DNA (5'-D(*GP*CP*GP*TP*5IUP*CP*GP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.SU,Y.-G.GAO,H.ROBINSON,S.PADMANABHAN,L.LIM,J.W.SHRIVER, . 63 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4478.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 37 58.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 36.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 7 11.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 73 0, 0.0 15,-3.0 0, 0.0 16,-0.4 0.000 360.0 360.0 360.0 169.0 9.2 18.6 -0.3 2 3 A T E -A 15 0A 62 13,-0.3 2,-0.5 14,-0.1 13,-0.3 -0.957 360.0-139.5-133.3 154.1 10.4 18.8 3.3 3 4 A V E -A 14 0A 0 11,-2.9 11,-2.7 -2,-0.3 2,-0.4 -0.944 17.9-157.6-112.0 126.2 9.4 20.4 6.6 4 5 A K E +A 13 0A 101 -2,-0.5 2,-0.3 9,-0.2 9,-0.2 -0.861 27.0 142.8-106.4 139.5 12.1 21.9 8.8 5 6 A F E -A 12 0A 10 7,-2.2 7,-2.9 -2,-0.4 2,-0.5 -0.977 44.1-116.4-168.4 159.2 11.6 22.3 12.5 6 7 A K E -A 11 0A 160 -2,-0.3 2,-0.4 38,-0.3 5,-0.2 -0.901 29.2-179.5-108.6 134.0 13.2 22.1 15.9 7 8 A Y E > -A 10 0A 64 3,-3.0 3,-1.7 -2,-0.5 -2,-0.0 -0.984 66.4 -18.4-139.4 123.4 12.1 19.6 18.4 8 9 A K T 3 S- 0 0 153 -2,-0.4 -1,-0.1 1,-0.3 3,-0.1 0.914 128.5 -48.3 49.7 52.9 13.5 19.2 21.9 9 10 A G T 3 S+ 0 0 77 1,-0.2 2,-0.4 -3,-0.1 -1,-0.3 0.579 118.1 109.0 68.2 12.9 16.7 21.0 21.1 10 11 A E E < -A 7 0A 120 -3,-1.7 -3,-3.0 2,-0.0 2,-0.4 -0.942 67.7-125.4-126.0 138.8 17.3 19.0 17.8 11 12 A E E -A 6 0A 73 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.2 -0.689 31.6-172.5 -79.7 133.0 17.0 20.2 14.2 12 13 A K E -A 5 0A 61 -7,-2.9 -7,-2.2 -2,-0.4 2,-0.3 -0.915 17.0-175.3-125.7 151.9 14.6 18.0 12.1 13 14 A E E -A 4 0A 113 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.844 15.4-174.7-148.5 104.5 13.9 18.0 8.4 14 15 A V E -A 3 0A 16 -11,-2.7 -11,-2.9 -2,-0.3 2,-0.1 -0.895 28.1-118.4-111.9 132.5 11.1 15.6 7.4 15 16 A D E > -A 2 0A 71 -2,-0.4 3,-2.0 -13,-0.3 4,-0.3 -0.393 26.0-128.5 -60.2 136.3 10.0 14.7 3.9 16 17 A I G > S+ 0 0 3 -15,-3.0 3,-1.9 1,-0.3 -1,-0.1 0.836 104.8 70.3 -63.0 -23.0 6.3 15.7 3.5 17 18 A S G 3 S+ 0 0 74 -16,-0.4 -1,-0.3 1,-0.3 -15,-0.1 0.742 95.9 55.3 -61.4 -27.5 5.5 12.2 2.2 18 19 A K G < S+ 0 0 102 -3,-2.0 16,-2.3 15,-0.1 2,-0.3 0.526 76.6 116.6 -82.9 -12.5 6.1 11.0 5.7 19 20 A I E < -B 33 0B 12 -3,-1.9 14,-0.3 -4,-0.3 3,-0.1 -0.492 39.9-178.5 -64.0 123.4 3.7 13.3 7.5 20 21 A K E + 0 0 117 12,-2.4 2,-0.3 -2,-0.3 13,-0.2 0.942 60.9 2.6 -88.5 -62.7 1.0 11.1 9.1 21 22 A K E -B 32 0B 86 11,-0.7 11,-2.3 41,-0.0 2,-0.3 -0.935 61.7-169.8-130.5 147.5 -1.5 13.5 10.7 22 23 A V E +B 31 0B 2 41,-0.5 40,-0.4 -2,-0.3 2,-0.3 -0.998 10.2 166.3-138.7 140.2 -1.6 17.3 10.8 23 24 A W E -B 30 0B 95 7,-2.7 7,-2.9 -2,-0.3 2,-0.4 -0.963 31.0-114.1-147.2 160.7 -3.8 19.7 12.8 24 25 A R E -B 29 0B 96 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.850 19.6-178.9-102.5 135.7 -4.0 23.4 13.8 25 26 A V E > -B 28 0B 72 3,-3.0 3,-2.1 -2,-0.4 2,-0.4 -0.790 69.6 -67.2-130.9 82.0 -3.5 24.8 17.3 26 27 A G T 3 S- 0 0 57 -2,-0.4 -1,-0.1 1,-0.3 0, 0.0 -0.561 118.4 -13.4 72.9-119.1 -4.1 28.5 16.8 27 28 A K T 3 S+ 0 0 150 -2,-0.4 20,-2.3 -3,-0.1 2,-0.4 0.445 120.4 97.8 -91.8 -5.0 -1.1 29.7 14.7 28 29 A M E < -BC 25 46B 78 -3,-2.1 -3,-3.0 18,-0.2 2,-0.7 -0.715 62.3-152.3 -90.4 133.3 0.7 26.4 15.3 29 30 A I E -BC 24 45B 0 16,-3.1 16,-2.4 -2,-0.4 2,-0.3 -0.946 22.4-169.2-104.4 111.6 0.6 23.7 12.7 30 31 A S E +BC 23 44B 19 -7,-2.9 -7,-2.7 -2,-0.7 2,-0.3 -0.811 11.4 162.7-105.1 146.2 1.1 20.4 14.6 31 32 A F E -BC 22 43B 0 12,-3.1 12,-2.6 -2,-0.3 2,-0.3 -0.973 31.4-136.2-156.2 169.3 1.8 17.0 13.1 32 33 A T E -BC 21 42B 23 -11,-2.3 -12,-2.4 -2,-0.3 -11,-0.7 -0.878 25.7-171.8-122.1 156.8 3.0 13.4 13.5 33 34 A Y E -BC 19 41B 16 8,-2.0 8,-2.7 -2,-0.3 2,-0.4 -0.976 28.2 -97.4-150.3 157.3 5.2 11.6 11.0 34 35 A D E + C 0 40B 84 -16,-2.3 6,-0.2 -2,-0.3 2,-0.2 -0.663 42.2 177.8 -79.6 133.7 6.6 8.2 10.3 35 36 A E > - 0 0 89 4,-3.0 3,-0.5 -2,-0.4 4,-0.3 -0.648 37.0 -71.8-121.6-178.1 10.1 7.4 11.5 36 37 A G G > S+ 0 0 63 -2,-0.2 3,-1.6 1,-0.2 -1,-0.2 -0.079 109.8 39.7 -70.0 167.3 12.3 4.4 11.5 37 38 A G G 3 S- 0 0 81 1,-0.3 -1,-0.2 3,-0.0 3,-0.1 0.684 129.5 -72.2 65.1 21.7 11.6 1.4 13.6 38 39 A G G < S+ 0 0 77 -3,-0.5 -1,-0.3 1,-0.2 2,-0.2 0.751 98.5 140.1 65.9 22.7 7.9 1.6 13.1 39 40 A K < - 0 0 136 -3,-1.6 -4,-3.0 -4,-0.3 2,-0.5 -0.576 49.3-132.6 -99.0 164.6 7.7 4.7 15.3 40 41 A T E -C 34 0B 62 -6,-0.2 -6,-0.2 -2,-0.2 2,-0.2 -0.971 17.8-159.6-119.4 120.9 5.9 7.9 15.1 41 42 A G E -C 33 0B 6 -8,-2.7 -8,-2.0 -2,-0.5 2,-0.3 -0.523 9.5-137.5 -92.4 164.5 7.6 11.3 15.6 42 43 A R E +C 32 0B 143 -10,-0.2 2,-0.3 -2,-0.2 -10,-0.2 -0.922 25.9 165.1-121.8 150.0 5.9 14.6 16.5 43 44 A G E -C 31 0B 2 -12,-2.6 -12,-3.1 -2,-0.3 2,-0.3 -0.989 14.5-167.1-159.7 160.5 6.6 18.1 15.1 44 45 A A E -C 30 0B 32 -2,-0.3 2,-0.3 -14,-0.2 -38,-0.3 -0.993 5.8-179.6-153.5 144.7 5.2 21.6 14.9 45 46 A V E -C 29 0B 13 -16,-2.4 -16,-3.1 -2,-0.3 2,-0.2 -0.941 37.8 -92.0-140.0 164.9 5.9 24.8 12.9 46 47 A S E > -C 28 0B 56 -2,-0.3 4,-2.7 -18,-0.2 3,-0.2 -0.523 31.1-127.7 -74.4 145.4 4.5 28.3 12.7 47 48 A E T 4 S+ 0 0 62 -20,-2.3 -1,-0.1 1,-0.2 -19,-0.1 0.743 113.5 60.8 -61.8 -27.8 1.8 28.7 10.1 48 49 A K T 4 S+ 0 0 176 -21,-0.2 -1,-0.2 1,-0.1 -20,-0.1 0.922 111.1 38.8 -64.6 -42.5 3.9 31.6 8.7 49 50 A D T 4 S+ 0 0 95 -3,-0.2 -2,-0.2 2,-0.0 -1,-0.1 0.987 90.6 123.5 -64.5 -70.3 6.6 29.0 8.1 50 51 A A < - 0 0 8 -4,-2.7 -3,-0.1 1,-0.1 -47,-0.1 0.488 62.1-127.2 2.2 104.9 4.3 26.2 6.9 51 52 A P > - 0 0 33 0, 0.0 4,-2.2 0, 0.0 3,-0.2 -0.312 21.9-122.7 -60.5 148.0 4.9 24.7 3.4 52 53 A K H > S+ 0 0 169 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.837 111.5 62.4 -63.8 -30.4 1.7 24.9 1.3 53 54 A E H > S+ 0 0 85 2,-0.2 4,-1.3 1,-0.2 -1,-0.2 0.934 108.1 42.5 -60.4 -45.0 1.9 21.1 0.8 54 55 A L H > S+ 0 0 0 -3,-0.2 4,-1.3 1,-0.2 -2,-0.2 0.906 113.8 50.6 -67.2 -45.5 1.5 20.6 4.6 55 56 A L H X S+ 0 0 43 -4,-2.2 4,-1.7 1,-0.2 -1,-0.2 0.850 107.4 54.7 -61.9 -34.6 -1.2 23.3 4.9 56 57 A Q H X S+ 0 0 83 -4,-2.5 4,-2.9 1,-0.2 -1,-0.2 0.828 101.5 58.6 -66.4 -36.4 -3.1 21.6 2.1 57 58 A M H X S+ 0 0 35 -4,-1.3 4,-0.8 2,-0.2 5,-0.3 0.891 102.2 55.5 -61.0 -38.5 -3.0 18.3 4.0 58 59 A L H >< S+ 0 0 9 -4,-1.3 3,-1.7 2,-0.2 -2,-0.2 0.989 113.0 38.9 -56.4 -63.1 -4.8 20.1 6.8 59 60 A E H 3< S+ 0 0 138 -4,-1.7 -2,-0.2 1,-0.3 -1,-0.2 0.872 120.8 47.1 -56.2 -38.4 -7.7 21.2 4.6 60 61 A K H 3< S+ 0 0 133 -4,-2.9 -1,-0.3 -5,-0.1 -2,-0.2 0.463 129.3 20.3 -85.1 -2.3 -7.6 17.9 2.8 61 62 A Q << + 0 0 72 -3,-1.7 -3,-0.2 -4,-0.8 -2,-0.1 0.490 55.7 162.4-124.3 -80.5 -7.5 15.9 6.0 62 63 A K 0 0 139 -40,-0.4 -4,-0.1 -5,-0.3 -39,-0.1 0.750 360.0 360.0 58.1 23.9 -8.6 17.5 9.2 63 64 A K 0 0 198 -41,-0.2 -41,-0.5 -5,-0.1 -1,-0.3 -0.820 360.0 360.0-141.7 360.0 -8.9 14.0 10.6