==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PHOTORECEPTOR 11-OCT-93 1BHA . COMPND 2 MOLECULE: BACTERIORHODOPSIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; . AUTHOR K.V.PERVUSHIN,V.Y.OREKHOV,A.I.POPOV,L.Y.MUSINA,A.S.ARSENIEV . 66 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5246.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 47 71.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 43 65.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A 0 0 104 0, 0.0 3,-0.4 0, 0.0 9,-0.1 0.000 360.0 360.0 360.0 76.5 -8.1 -17.4 -5.5 2 3 A Q + 0 0 168 1,-0.3 2,-1.2 7,-0.1 3,-0.2 0.955 360.0 40.4 -74.6 -54.3 -5.5 -19.6 -7.0 3 4 A I + 0 0 62 1,-0.2 -1,-0.3 3,-0.1 7,-0.2 -0.661 66.1 152.0 -98.2 76.6 -4.4 -21.5 -3.9 4 5 A T + 0 0 106 -2,-1.2 -1,-0.2 -3,-0.4 -2,-0.1 0.681 61.4 76.4 -77.0 -19.3 -7.8 -22.0 -2.3 5 6 A G S S+ 0 0 62 -3,-0.2 -1,-0.2 1,-0.1 -2,-0.1 0.937 95.1 48.3 -55.4 -52.1 -6.5 -25.1 -0.6 6 7 A R > - 0 0 158 -3,-0.2 4,-1.1 1,-0.1 3,-0.4 -0.842 66.7-161.5 -98.1 122.4 -4.6 -23.0 2.0 7 8 A P H > S+ 0 0 103 0, 0.0 4,-2.0 0, 0.0 -1,-0.1 0.684 90.8 66.2 -71.7 -18.9 -6.6 -20.3 3.7 8 9 A E H > S+ 0 0 157 2,-0.2 4,-1.9 1,-0.2 5,-0.1 0.867 99.6 48.7 -69.0 -38.0 -3.3 -18.7 4.7 9 10 A W H > S+ 0 0 62 -3,-0.4 4,-2.6 2,-0.2 -1,-0.2 0.852 111.7 50.5 -69.0 -35.3 -2.4 -18.0 1.1 10 11 A I H X S+ 0 0 55 -4,-1.1 4,-2.3 -7,-0.2 -2,-0.2 0.860 109.3 50.3 -69.4 -36.9 -5.9 -16.5 0.7 11 12 A W H X S+ 0 0 189 -4,-2.0 4,-2.2 2,-0.2 -2,-0.2 0.852 111.1 50.2 -68.3 -35.3 -5.3 -14.4 3.8 12 13 A L H X S+ 0 0 32 -4,-1.9 4,-2.5 2,-0.2 -2,-0.2 0.930 111.3 46.6 -67.5 -47.2 -2.0 -13.3 2.3 13 14 A A H X S+ 0 0 28 -4,-2.6 4,-2.2 1,-0.2 -2,-0.2 0.870 112.8 51.2 -62.0 -38.1 -3.6 -12.4 -1.0 14 15 A L H X S+ 0 0 90 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.893 109.7 49.7 -65.6 -41.1 -6.3 -10.5 0.9 15 16 A G H X S+ 0 0 24 -4,-2.2 4,-2.5 2,-0.2 -2,-0.2 0.884 111.9 47.7 -64.5 -40.8 -3.6 -8.7 2.9 16 17 A T H X S+ 0 0 2 -4,-2.5 4,-2.3 2,-0.2 -1,-0.2 0.859 112.7 48.8 -67.9 -37.1 -1.8 -7.7 -0.3 17 18 A A H X S+ 0 0 59 -4,-2.2 4,-2.3 2,-0.2 -2,-0.2 0.853 111.2 50.7 -70.2 -35.8 -5.1 -6.6 -1.8 18 19 A L H X S+ 0 0 117 -4,-2.3 4,-2.5 2,-0.2 -2,-0.2 0.925 113.1 44.6 -66.7 -46.4 -5.9 -4.6 1.3 19 20 A M H X S+ 0 0 64 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.876 114.3 49.8 -64.8 -39.6 -2.5 -2.9 1.2 20 21 A G H X S+ 0 0 20 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.872 111.3 48.9 -66.8 -39.0 -2.8 -2.3 -2.5 21 22 A L H X S+ 0 0 92 -4,-2.3 4,-2.2 2,-0.2 -2,-0.2 0.924 112.8 47.2 -66.2 -46.2 -6.2 -0.8 -2.1 22 23 A G H X S+ 0 0 35 -4,-2.5 4,-1.9 1,-0.2 -2,-0.2 0.871 112.5 50.0 -62.4 -39.1 -5.1 1.5 0.7 23 24 A T H X S+ 0 0 3 -4,-2.3 4,-1.9 2,-0.2 -1,-0.2 0.841 107.3 55.4 -67.9 -34.9 -2.1 2.5 -1.3 24 25 A L H X S+ 0 0 100 -4,-1.9 4,-2.3 2,-0.2 -2,-0.2 0.941 109.9 44.6 -62.6 -49.5 -4.3 3.2 -4.3 25 26 A Y H X S+ 0 0 122 -4,-2.2 4,-2.6 1,-0.2 -1,-0.2 0.857 111.4 54.4 -62.6 -37.2 -6.5 5.6 -2.3 26 27 A F H X S+ 0 0 49 -4,-1.9 4,-1.6 2,-0.2 -1,-0.2 0.842 109.4 47.4 -65.3 -35.1 -3.4 7.2 -0.8 27 28 A L H X S+ 0 0 60 -4,-1.9 4,-2.6 2,-0.2 5,-0.2 0.882 111.9 49.6 -72.8 -40.2 -2.0 7.8 -4.2 28 29 A V H X S+ 0 0 80 -4,-2.3 4,-1.9 1,-0.2 -2,-0.2 0.895 115.5 43.3 -64.6 -41.6 -5.3 9.3 -5.4 29 30 A K H X S+ 0 0 136 -4,-2.6 4,-2.4 2,-0.2 -1,-0.2 0.804 111.9 56.2 -72.8 -30.6 -5.4 11.5 -2.3 30 31 A G H < S+ 0 0 17 -4,-1.6 -2,-0.2 2,-0.2 -1,-0.2 0.915 114.4 36.6 -66.7 -45.5 -1.8 12.3 -2.8 31 32 A M H < S+ 0 0 150 -4,-2.6 -2,-0.2 1,-0.2 -1,-0.2 0.784 117.2 54.0 -77.0 -29.5 -2.3 13.5 -6.4 32 33 A G H < 0 0 56 -4,-1.9 -2,-0.2 -5,-0.2 -1,-0.2 0.873 360.0 360.0 -71.5 -39.4 -5.6 15.1 -5.4 33 34 A V < 0 0 155 -4,-2.4 -3,-0.1 -5,-0.1 -4,-0.1 0.874 360.0 360.0 36.3 360.0 -4.1 17.1 -2.6 34 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 37 A P > 0 0 139 0, 0.0 4,-0.5 0, 0.0 3,-0.4 0.000 360.0 360.0 360.0 -41.9 13.1 18.8 0.9 36 38 A D H > + 0 0 95 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.619 360.0 74.1 -83.0 -15.2 13.1 15.5 2.7 37 39 A A H > S+ 0 0 69 1,-0.2 4,-2.3 2,-0.2 -1,-0.2 0.784 91.3 57.1 -66.7 -27.8 9.5 16.1 3.6 38 40 A K H > S+ 0 0 155 -3,-0.4 4,-2.2 2,-0.2 -1,-0.2 0.893 109.0 44.2 -69.2 -41.5 8.7 15.3 -0.0 39 41 A K H X S+ 0 0 125 -4,-0.5 4,-2.7 2,-0.2 -2,-0.2 0.910 113.5 50.9 -68.6 -44.1 10.3 11.9 0.3 40 42 A F H X S+ 0 0 144 -4,-2.5 4,-2.3 1,-0.2 -2,-0.2 0.890 113.0 45.9 -60.0 -41.8 8.7 11.2 3.6 41 43 A Y H X S+ 0 0 113 -4,-2.3 4,-1.6 2,-0.2 -1,-0.2 0.879 111.1 52.3 -68.6 -40.1 5.3 12.1 2.2 42 44 A A H X S+ 0 0 46 -4,-2.2 4,-1.3 2,-0.2 -2,-0.2 0.917 112.2 45.6 -61.7 -44.9 5.9 10.0 -0.9 43 45 A I H < S+ 0 0 96 -4,-2.7 -2,-0.2 1,-0.2 -1,-0.2 0.901 109.9 54.5 -64.5 -42.4 6.8 7.1 1.2 44 46 A T H < S+ 0 0 57 -4,-2.3 3,-0.5 1,-0.3 -1,-0.2 0.798 112.2 44.7 -60.8 -29.9 3.8 7.7 3.4 45 47 A T H < S+ 0 0 6 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.685 114.0 48.9 -85.9 -21.8 1.7 7.6 0.3 46 48 A L S X S+ 0 0 70 -4,-1.3 4,-2.7 -3,-0.2 5,-0.2 0.092 79.2 107.5-102.6 19.1 3.5 4.5 -1.0 47 49 A V H > S+ 0 0 79 -3,-0.5 4,-1.9 1,-0.2 -1,-0.2 0.937 87.7 36.5 -60.3 -49.2 3.0 2.8 2.4 48 50 A P H > S+ 0 0 10 0, 0.0 4,-2.1 0, 0.0 -1,-0.2 0.737 114.1 59.2 -74.9 -24.3 0.4 0.5 1.0 49 51 A A H > S+ 0 0 22 2,-0.2 4,-1.9 -4,-0.2 -2,-0.2 0.898 110.5 40.3 -69.8 -42.1 2.3 0.3 -2.3 50 52 A I H X S+ 0 0 73 -4,-2.7 4,-2.5 -7,-0.2 5,-0.2 0.876 113.6 54.3 -73.0 -39.3 5.4 -1.0 -0.5 51 53 A A H X S+ 0 0 13 -4,-1.9 4,-2.1 -5,-0.2 -2,-0.2 0.888 110.6 47.0 -60.6 -40.7 3.2 -3.3 1.7 52 54 A F H X S+ 0 0 78 -4,-2.1 4,-2.2 2,-0.2 -1,-0.2 0.890 110.1 52.0 -67.8 -41.7 1.7 -4.7 -1.4 53 55 A T H X S+ 0 0 69 -4,-1.9 4,-2.4 1,-0.2 -2,-0.2 0.877 112.0 46.9 -61.8 -39.8 5.0 -5.2 -3.1 54 56 A M H X S+ 0 0 122 -4,-2.5 4,-0.9 2,-0.2 -1,-0.2 0.872 113.5 47.4 -69.4 -39.2 6.3 -7.1 -0.1 55 57 A Y H X S+ 0 0 23 -4,-2.1 4,-2.5 -5,-0.2 -2,-0.2 0.777 114.4 47.9 -72.1 -28.3 3.1 -9.2 0.1 56 58 A L H X>S+ 0 0 44 -4,-2.2 4,-2.6 2,-0.2 5,-0.8 0.877 105.6 56.6 -78.2 -41.3 3.4 -9.9 -3.6 57 59 A S H <5S+ 0 0 13 -4,-2.4 6,-1.2 1,-0.2 7,-1.1 0.768 118.1 36.5 -60.7 -25.7 7.1 -10.8 -3.4 58 60 A M H <5S+ 0 0 96 -4,-0.9 -2,-0.2 3,-0.2 -1,-0.2 0.846 116.7 50.2 -92.8 -43.7 6.0 -13.4 -0.8 59 61 A L H <5S+ 0 0 24 -4,-2.5 -3,-0.2 1,-0.2 -2,-0.2 0.978 125.7 27.6 -58.3 -60.3 2.7 -14.4 -2.3 60 62 A L T <5S- 0 0 111 -4,-2.6 -1,-0.2 -5,-0.1 -3,-0.2 0.837 101.7-140.1 -70.5 -34.1 4.1 -15.0 -5.8 61 63 A G < + 0 0 11 -5,-0.8 5,-0.2 4,-0.0 -3,-0.2 0.902 65.5 120.8 73.8 43.7 7.5 -15.8 -4.2 62 64 A Y S S+ 0 0 112 -6,-0.3 -5,-0.1 -5,-0.3 -4,-0.1 0.559 84.6 25.8-109.5 -17.5 9.5 -14.0 -6.9 63 65 A G S S+ 0 0 24 -6,-1.2 -5,-0.2 -7,-0.1 -6,-0.1 0.259 133.6 34.5-127.1 5.1 11.2 -11.5 -4.6 64 66 A L S S+ 0 0 96 -7,-1.1 -6,-0.2 -8,-0.1 -7,-0.1 0.651 122.0 36.7-122.2 -59.5 11.1 -13.5 -1.4 65 67 A T S S+ 0 0 116 -8,-0.7 -3,-0.1 1,-0.2 -7,-0.1 0.885 126.2 41.8 -65.2 -40.7 11.5 -17.1 -2.3 66 68 A M 0 0 142 1,-0.2 -1,-0.2 -9,-0.2 -3,-0.1 0.949 360.0 360.0 -71.1 -51.9 14.0 -16.3 -5.0 67 69 A V 0 0 136 0, 0.0 -1,-0.2 0, 0.0 -6,-0.0 -0.955 360.0 360.0-136.0 360.0 15.9 -13.6 -3.2