==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER PHOTORECEPTOR 11-OCT-93 1BHB . COMPND 2 MOLECULE: BACTERIORHODOPSIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HALOBACTERIUM SALINARUM; . AUTHOR V.Y.OREKHOV,K.V.PERVUSHIN,A.I.POPOV,L.Y.MUSINA,A.S.ARSENIEV . 67 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 5279.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 45 67.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 42 62.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 1 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 2 A A > 0 0 114 0, 0.0 3,-1.8 0, 0.0 4,-0.3 0.000 360.0 360.0 360.0 67.0 1.5 -25.4 11.7 2 3 A Q T 3 + 0 0 184 1,-0.3 0, 0.0 2,-0.1 0, 0.0 0.621 360.0 68.0 -69.2 -12.6 2.9 -27.7 8.9 3 4 A I T 3 S- 0 0 137 0, 0.0 -1,-0.3 0, 0.0 0, 0.0 0.339 113.5-120.1 -87.2 5.5 -0.6 -29.2 8.8 4 5 A T < - 0 0 101 -3,-1.8 -2,-0.1 1,-0.1 0, 0.0 0.978 33.6-171.9 51.7 76.7 -1.8 -25.8 7.5 5 6 A G S S+ 0 0 65 -4,-0.3 -1,-0.1 1,-0.2 -3,-0.1 0.761 72.0 11.2 -67.8 -25.9 -4.3 -24.9 10.2 6 7 A R S S- 0 0 140 -5,-0.2 2,-1.9 0, 0.0 -1,-0.2 -0.989 85.1-100.5-152.7 153.0 -5.4 -22.0 8.1 7 8 A P > + 0 0 84 0, 0.0 4,-2.0 0, 0.0 3,-0.4 -0.547 43.8 166.3 -77.2 81.9 -5.0 -20.7 4.5 8 9 A E H > S+ 0 0 89 -2,-1.9 4,-2.0 1,-0.2 5,-0.1 0.691 73.9 63.8 -68.8 -18.8 -2.4 -18.1 5.3 9 10 A W H > S+ 0 0 50 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.892 106.8 41.1 -70.7 -41.2 -1.9 -17.9 1.5 10 11 A I H > S+ 0 0 72 -3,-0.4 4,-2.4 2,-0.2 -2,-0.2 0.857 114.3 52.3 -73.2 -37.1 -5.4 -16.6 1.0 11 12 A W H X S+ 0 0 169 -4,-2.0 4,-2.3 1,-0.2 -2,-0.2 0.859 111.0 48.4 -65.8 -35.9 -5.1 -14.4 4.1 12 13 A L H X S+ 0 0 25 -4,-2.0 4,-2.3 2,-0.2 -2,-0.2 0.867 109.5 52.2 -70.8 -38.0 -1.9 -13.0 2.6 13 14 A A H X S+ 0 0 26 -4,-1.8 4,-2.0 2,-0.2 -2,-0.2 0.895 112.1 45.7 -64.2 -41.5 -3.7 -12.5 -0.8 14 15 A L H X S+ 0 0 104 -4,-2.4 4,-2.6 2,-0.2 -2,-0.2 0.896 112.6 50.7 -67.6 -41.8 -6.4 -10.6 1.0 15 16 A G H X S+ 0 0 38 -4,-2.3 4,-2.3 1,-0.2 -2,-0.2 0.842 111.5 48.6 -63.9 -35.4 -3.9 -8.6 3.0 16 17 A T H X S+ 0 0 8 -4,-2.3 4,-2.3 2,-0.2 -1,-0.2 0.858 110.8 50.1 -72.3 -37.5 -2.1 -7.8 -0.2 17 18 A A H X S+ 0 0 48 -4,-2.0 4,-2.5 2,-0.2 5,-0.2 0.904 112.3 47.4 -66.7 -42.9 -5.3 -6.7 -2.0 18 19 A L H X S+ 0 0 129 -4,-2.6 4,-2.3 1,-0.2 -2,-0.2 0.936 113.2 47.9 -63.0 -48.4 -6.2 -4.5 0.9 19 20 A M H X S+ 0 0 27 -4,-2.3 4,-2.2 2,-0.2 33,-0.2 0.873 111.0 52.8 -59.6 -39.8 -2.7 -3.0 1.0 20 21 A G H X S+ 0 0 8 -4,-2.3 4,-2.4 2,-0.2 -2,-0.2 0.954 111.2 43.5 -60.8 -53.7 -2.9 -2.5 -2.7 21 22 A L H X S+ 0 0 130 -4,-2.5 4,-2.6 1,-0.2 -1,-0.2 0.837 112.4 56.4 -60.8 -33.6 -6.2 -0.6 -2.6 22 23 A G H X S+ 0 0 23 -4,-2.3 4,-2.1 -5,-0.2 -1,-0.2 0.884 107.5 46.9 -65.2 -40.8 -4.8 1.3 0.3 23 24 A T H X S+ 0 0 2 -4,-2.2 4,-2.0 25,-0.3 -2,-0.2 0.902 112.8 48.9 -67.5 -43.0 -1.8 2.4 -1.6 24 25 A L H X S+ 0 0 116 -4,-2.4 4,-1.9 1,-0.2 -2,-0.2 0.919 112.6 48.3 -62.3 -45.5 -4.0 3.5 -4.6 25 26 A Y H X S+ 0 0 144 -4,-2.6 4,-1.8 1,-0.2 -1,-0.2 0.877 110.4 51.6 -62.0 -40.0 -6.3 5.3 -2.3 26 27 A F H X S+ 0 0 34 -4,-2.1 4,-2.2 1,-0.2 -1,-0.2 0.843 108.2 51.8 -65.5 -35.2 -3.4 7.0 -0.6 27 28 A L H X S+ 0 0 75 -4,-2.0 4,-2.2 2,-0.2 -1,-0.2 0.864 106.6 53.9 -68.8 -37.3 -2.1 8.1 -4.0 28 29 A V H X S+ 0 0 70 -4,-1.9 4,-1.5 2,-0.2 -2,-0.2 0.891 110.1 47.0 -63.2 -40.8 -5.4 9.6 -4.8 29 30 A K H < S+ 0 0 99 -4,-1.8 -2,-0.2 1,-0.2 -1,-0.2 0.894 111.7 50.6 -67.1 -41.5 -5.3 11.6 -1.7 30 31 A G H < S+ 0 0 24 -4,-2.2 -2,-0.2 1,-0.2 -1,-0.2 0.830 104.9 58.6 -64.9 -33.5 -1.8 12.7 -2.4 31 32 A M H < S- 0 0 138 -4,-2.2 -1,-0.2 2,-0.2 -2,-0.2 0.900 119.5-106.4 -62.4 -43.4 -2.8 13.7 -5.9 32 33 A G < 0 0 52 -4,-1.5 -1,-0.1 1,-0.5 -4,-0.0 -0.644 360.0 360.0 155.9 -90.4 -5.4 16.2 -4.5 33 34 A V 0 0 145 -2,-0.2 -1,-0.5 -3,-0.0 -2,-0.2 -0.285 360.0 360.0 -60.8 360.0 -9.1 15.3 -4.7 34 ! 0 0 0 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 360.0 0.0 0.0 0.0 35 37 A P 0 0 129 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 -21.2 3.5 17.3 6.8 36 38 A D - 0 0 126 1,-0.4 2,-0.3 0, 0.0 3,-0.1 0.370 360.0 -17.4-147.0 -55.2 7.3 17.1 7.0 37 39 A A > - 0 0 54 1,-0.1 4,-2.2 0, 0.0 -1,-0.4 -0.972 54.2-112.6-157.9 163.6 8.8 16.6 3.5 38 40 A K H > S+ 0 0 158 -2,-0.3 4,-2.1 2,-0.2 5,-0.1 0.863 119.6 49.7 -68.4 -37.2 8.0 15.6 -0.0 39 41 A K H > S+ 0 0 170 2,-0.2 4,-2.5 1,-0.2 5,-0.2 0.931 111.3 48.0 -66.4 -47.4 10.0 12.5 0.4 40 42 A F H > S+ 0 0 99 1,-0.2 4,-2.3 2,-0.2 -2,-0.2 0.878 112.7 49.4 -60.2 -40.4 8.4 11.6 3.6 41 43 A Y H X S+ 0 0 67 -4,-2.2 4,-1.7 2,-0.2 -1,-0.2 0.868 109.1 52.4 -66.7 -38.7 5.0 12.2 2.1 42 44 A A H X S+ 0 0 32 -4,-2.1 4,-1.2 2,-0.2 -2,-0.2 0.936 111.5 45.5 -62.4 -48.5 5.8 10.1 -0.9 43 45 A I H < S+ 0 0 92 -4,-2.5 3,-0.3 1,-0.2 -2,-0.2 0.889 111.5 53.2 -61.5 -40.7 6.9 7.2 1.3 44 46 A T H < S+ 0 0 50 -4,-2.3 3,-0.5 1,-0.3 -1,-0.2 0.805 112.1 45.3 -64.1 -30.2 3.8 7.7 3.4 45 47 A T H < S+ 0 0 6 -4,-1.7 -1,-0.3 1,-0.2 -2,-0.2 0.626 113.4 50.0 -86.4 -16.5 1.8 7.5 0.2 46 48 A L S X S+ 0 0 66 -4,-1.2 4,-2.7 -3,-0.3 5,-0.2 0.168 80.1 102.7-104.6 13.8 3.7 4.5 -0.9 47 49 A V H > S+ 0 0 86 -3,-0.5 4,-1.9 1,-0.2 -1,-0.2 0.938 89.9 36.6 -60.4 -49.2 3.2 2.8 2.5 48 50 A P H > S+ 0 0 12 0, 0.0 4,-2.2 0, 0.0 -25,-0.3 0.731 114.4 58.8 -74.9 -23.7 0.5 0.5 1.0 49 51 A A H > S+ 0 0 22 2,-0.2 4,-1.8 1,-0.2 -2,-0.2 0.883 110.3 41.2 -71.3 -40.1 2.5 0.3 -2.3 50 52 A I H X S+ 0 0 93 -4,-2.7 4,-2.6 2,-0.2 5,-0.2 0.871 114.4 52.4 -74.0 -39.1 5.5 -1.1 -0.4 51 53 A A H X S+ 0 0 38 -4,-1.9 4,-2.3 -5,-0.2 -2,-0.2 0.895 112.0 46.3 -62.8 -41.5 3.3 -3.4 1.7 52 54 A F H X S+ 0 0 78 -4,-2.2 4,-2.5 -33,-0.2 -1,-0.2 0.877 111.7 51.1 -68.0 -39.7 1.6 -4.7 -1.5 53 55 A T H X S+ 0 0 88 -4,-1.8 4,-2.2 2,-0.2 -2,-0.2 0.896 112.2 46.8 -64.2 -42.3 5.0 -5.2 -3.2 54 56 A M H X S+ 0 0 133 -4,-2.6 4,-1.9 2,-0.2 -2,-0.2 0.904 114.2 46.8 -66.0 -43.8 6.3 -7.1 -0.2 55 57 A Y H X S+ 0 0 19 -4,-2.3 4,-2.8 2,-0.2 5,-0.2 0.859 112.2 50.8 -66.1 -37.3 3.1 -9.2 0.1 56 58 A L H X S+ 0 0 62 -4,-2.5 4,-2.1 2,-0.2 -2,-0.2 0.893 111.1 48.1 -66.8 -41.3 3.2 -9.9 -3.7 57 59 A S H X S+ 0 0 75 -4,-2.2 4,-2.0 2,-0.2 -2,-0.2 0.833 112.7 50.4 -67.4 -33.6 6.8 -10.9 -3.5 58 60 A M H X S+ 0 0 82 -4,-1.9 4,-1.9 2,-0.2 5,-0.2 0.941 112.5 43.5 -69.3 -50.1 6.0 -13.2 -0.5 59 61 A L H X>S+ 0 0 3 -4,-2.8 4,-2.3 1,-0.2 5,-1.1 0.836 116.2 50.2 -63.9 -33.5 3.1 -14.9 -2.2 60 62 A L H <5S+ 0 0 90 -4,-2.1 -1,-0.2 -5,-0.2 -2,-0.2 0.863 104.4 58.5 -71.8 -37.4 5.2 -15.1 -5.3 61 63 A G H <5S+ 0 0 64 -4,-2.0 -2,-0.2 1,-0.2 -1,-0.2 0.915 116.2 33.3 -57.2 -47.2 8.1 -16.6 -3.3 62 64 A Y H <5S- 0 0 135 -4,-1.9 -1,-0.2 -5,-0.1 -2,-0.2 0.828 99.6-142.5 -78.1 -34.8 5.9 -19.5 -2.2 63 65 A G T <5 + 0 0 18 -4,-2.3 -3,-0.2 -5,-0.2 -4,-0.1 0.964 59.1 122.7 69.5 55.2 3.9 -19.6 -5.4 64 66 A L S