==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=20-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 26-NOV-97 1BIK . COMPND 2 MOLECULE: BIKUNIN; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR Y.XU,P.D.CARR,J.M.GUSS,D.L.OLLIS . 110 1 6 6 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6190.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 60 54.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 20 18.2 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 14 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 4.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 12.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 2 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 25 A S > 0 0 89 0, 0.0 3,-1.9 0, 0.0 39,-0.2 0.000 360.0 360.0 360.0 -52.4 13.8 33.0 -4.2 2 26 A a T 3 + 0 0 37 1,-0.3 20,-0.4 49,-0.1 50,-0.1 0.736 360.0 53.6 -51.6 -26.8 12.8 34.1 -0.7 3 27 A Q T 3 S+ 0 0 99 18,-0.1 -1,-0.3 2,-0.1 2,-0.1 0.713 90.9 95.4 -82.3 -23.7 10.1 36.1 -2.4 4 28 A L S < S- 0 0 82 -3,-1.9 16,-0.1 1,-0.1 3,-0.1 -0.379 78.2-119.7 -70.1 146.7 8.7 33.1 -4.3 5 29 A G - 0 0 54 1,-0.1 35,-0.2 -2,-0.1 -1,-0.1 -0.337 47.2 -82.4 -75.2 167.6 5.8 31.1 -3.0 6 30 A Y - 0 0 130 13,-0.1 2,-0.4 33,-0.1 -1,-0.1 -0.365 39.6-154.8 -75.1 154.8 6.5 27.4 -2.3 7 31 A S - 0 0 41 33,-0.3 31,-0.3 31,-0.1 26,-0.1 -0.962 14.2-170.7-133.3 117.7 6.5 24.8 -5.0 8 32 A A - 0 0 34 -2,-0.4 25,-2.7 24,-0.1 27,-0.5 0.777 38.1-143.1 -72.9 -27.6 5.8 21.1 -4.4 9 33 A G - 0 0 27 1,-0.2 27,-0.2 23,-0.1 -1,-0.1 -0.117 27.7 -75.6 84.0 168.9 6.7 20.1 -7.9 10 34 A P S S+ 0 0 101 0, 0.0 -1,-0.2 0, 0.0 26,-0.1 0.568 96.9 97.9 -80.9 -14.1 5.0 17.3 -10.1 11 35 A b - 0 0 51 24,-0.5 23,-0.1 -3,-0.2 24,-0.1 -0.207 66.3-139.6 -74.7 170.7 6.5 14.3 -8.4 12 36 A M + 0 0 171 1,-0.1 2,-1.8 22,-0.1 22,-0.2 0.301 67.7 109.1-114.1 7.5 5.0 12.2 -5.7 13 37 A G - 0 0 47 20,-2.1 -1,-0.1 2,-0.0 19,-0.1 -0.453 62.4-157.2 -86.5 67.9 7.9 11.5 -3.3 14 38 A M + 0 0 115 -2,-1.8 2,-0.3 17,-0.1 19,-0.2 -0.134 21.5 164.2 -52.9 128.1 6.5 13.7 -0.6 15 39 A T E -A 32 0A 64 17,-1.9 17,-3.4 15,-0.1 2,-0.4 -0.969 40.5-106.8-142.7 152.4 8.9 15.2 2.1 16 40 A S E +A 31 0A 66 -2,-0.3 2,-0.3 15,-0.2 15,-0.2 -0.685 47.2 168.3 -85.2 129.8 8.6 18.0 4.6 17 41 A R E -A 30 0A 66 13,-2.7 13,-1.9 -2,-0.4 2,-0.4 -0.902 30.7-112.5-135.4 168.2 10.6 21.0 3.6 18 42 A Y E -AB 29 42A 54 24,-3.4 24,-2.8 -2,-0.3 2,-0.4 -0.828 25.7-179.0-106.6 142.0 11.0 24.6 4.7 19 43 A F E -A 28 0A 19 9,-2.8 9,-3.1 -2,-0.4 2,-0.5 -0.990 31.9-114.3-136.9 141.6 10.0 27.7 2.7 20 44 A Y E -A 27 0A 18 -2,-0.4 2,-0.8 7,-0.3 7,-0.3 -0.695 23.5-156.0 -78.8 122.3 10.4 31.3 3.8 21 45 A N E >> -A 26 0A 38 5,-3.0 4,-1.8 -2,-0.5 5,-1.6 -0.853 5.5-168.2-101.3 102.0 7.1 33.1 4.3 22 46 A G T 45S+ 0 0 47 -2,-0.8 -1,-0.1 -20,-0.4 5,-0.1 0.568 85.0 56.0 -66.2 -11.4 7.6 36.8 3.9 23 47 A T T 45S+ 0 0 131 3,-0.1 -1,-0.2 1,-0.1 -2,-0.0 0.878 119.8 29.3 -85.1 -43.8 4.2 37.6 5.3 24 48 A S T 45S- 0 0 42 2,-0.2 71,-0.3 -3,-0.2 -2,-0.2 0.558 100.8-134.6 -88.9 -12.3 4.8 35.8 8.5 25 49 A M T <5 + 0 0 51 -4,-1.8 70,-1.7 1,-0.2 2,-0.3 0.898 69.3 114.7 54.5 44.0 8.5 36.5 8.3 26 50 A A E S- 0 0 64 -26,-0.1 4,-1.9 1,-0.1 5,-0.1 -0.941 73.3-127.1-128.5 154.0 16.4 23.0 7.9 45 69 A E H > S+ 0 0 16 -2,-0.3 4,-2.9 1,-0.2 5,-0.2 0.807 109.5 63.0 -68.5 -26.2 14.9 26.2 9.4 46 70 A K H > S+ 0 0 94 2,-0.2 4,-3.2 1,-0.2 5,-0.3 0.976 106.2 42.3 -60.8 -54.7 18.4 27.4 10.0 47 71 A E H > S+ 0 0 91 2,-0.2 4,-2.0 1,-0.2 5,-0.2 0.914 115.0 51.1 -54.1 -52.8 19.3 27.5 6.3 48 72 A c H X S+ 0 0 0 -4,-1.9 4,-3.2 1,-0.2 5,-0.3 0.957 114.5 42.9 -54.1 -50.4 16.0 29.0 5.4 49 73 A L H X S+ 0 0 0 -4,-2.9 4,-2.4 1,-0.2 -2,-0.2 0.913 112.7 49.3 -67.5 -45.4 16.4 31.7 8.0 50 74 A Q H < S+ 0 0 74 -4,-3.2 -1,-0.2 -5,-0.2 -2,-0.2 0.815 119.2 43.2 -65.6 -24.2 20.0 32.6 7.4 51 75 A T H < S+ 0 0 81 -4,-2.0 -2,-0.2 -5,-0.3 -1,-0.2 0.905 127.8 22.3 -84.9 -45.5 19.2 32.8 3.7 52 76 A a H < S+ 0 0 6 -4,-3.2 -3,-0.2 -5,-0.2 -2,-0.2 0.538 87.1 117.8-102.6 -11.0 15.8 34.7 3.7 53 77 A R < - 0 0 13 -4,-2.4 2,-0.2 -5,-0.3 -27,-0.0 -0.241 39.9-168.3 -63.9 148.8 15.6 36.6 7.0 54 78 A T > - 0 0 64 -29,-0.1 3,-1.4 0, 0.0 4,-0.1 -0.756 39.6 -96.0-124.7 175.4 15.4 40.5 6.9 55 79 A V G > S+ 0 0 99 1,-0.3 3,-1.0 -2,-0.2 4,-0.2 0.513 111.7 79.6 -75.3 -4.7 15.8 43.2 9.6 56 80 A A G > S+ 0 0 36 1,-0.2 3,-1.2 2,-0.2 -1,-0.3 0.666 78.1 73.2 -73.4 -16.8 12.0 43.3 10.0 57 81 A A G X S+ 0 0 2 -3,-1.4 3,-1.3 1,-0.3 -1,-0.2 0.692 79.0 73.9 -67.6 -22.0 12.5 40.2 12.1 58 82 A d G < S+ 0 0 14 -3,-1.0 -1,-0.3 1,-0.3 -2,-0.2 0.729 94.6 51.9 -65.7 -21.1 13.9 42.4 14.9 59 83 A N G < S+ 0 0 137 -3,-1.2 -1,-0.3 -4,-0.2 -2,-0.2 0.524 90.4 105.2 -90.7 -8.8 10.4 43.6 15.5 60 84 A L S < S- 0 0 32 -3,-1.3 18,-0.2 -4,-0.2 16,-0.1 -0.396 78.4-102.7 -75.9 151.6 9.0 40.1 15.9 61 85 A P - 0 0 85 0, 0.0 2,-0.7 0, 0.0 35,-0.3 -0.304 37.9-104.2 -67.7 154.4 8.0 38.5 19.2 62 86 A I - 0 0 69 13,-0.1 2,-0.5 33,-0.1 35,-0.1 -0.770 44.8-164.4 -84.7 113.5 10.4 36.0 20.8 63 87 A V - 0 0 43 -2,-0.7 31,-0.3 33,-0.3 26,-0.1 -0.921 26.9-177.7-111.9 121.1 8.7 32.6 20.1 64 88 A R - 0 0 129 -2,-0.5 25,-2.4 24,-0.1 27,-0.4 0.837 37.7-152.2 -79.3 -33.2 9.6 29.4 21.9 65 89 A G - 0 0 26 1,-0.2 27,-0.2 23,-0.1 28,-0.1 -0.027 29.0 -73.7 81.5 170.5 7.0 27.4 19.8 66 90 A P S S+ 0 0 83 0, 0.0 -1,-0.2 0, 0.0 2,-0.1 0.474 96.8 92.9 -81.1 -10.6 5.2 24.2 20.9 67 91 A e - 0 0 50 24,-0.4 24,-0.1 -3,-0.3 23,-0.1 -0.403 60.7-146.9 -86.3 168.7 7.9 21.6 20.6 68 92 A R + 0 0 203 -2,-0.1 2,-1.5 1,-0.1 22,-0.2 0.119 64.5 108.9-123.3 20.7 10.4 20.4 23.3 69 93 A A - 0 0 72 20,-2.2 -1,-0.1 2,-0.0 19,-0.1 -0.591 67.3-157.3 -93.4 67.2 13.6 19.6 21.5 70 94 A F + 0 0 103 -2,-1.5 2,-0.3 17,-0.1 19,-0.2 -0.228 24.0 172.5 -57.5 131.8 15.1 22.7 23.2 71 95 A I E -C 88 0B 80 17,-2.3 17,-3.4 -2,-0.0 2,-0.8 -0.989 32.4-123.2-137.0 139.5 18.1 24.5 21.9 72 96 A Q E +C 87 0B 143 -2,-0.3 2,-0.2 15,-0.3 13,-0.0 -0.793 43.6 160.9 -91.5 113.3 19.4 27.8 23.2 73 97 A L E -C 86 0B 14 13,-2.0 13,-2.6 -2,-0.8 2,-0.3 -0.600 36.6 -99.0-120.0 179.5 19.5 30.4 20.5 74 98 A W E +CD 85 98B 55 24,-2.8 24,-3.2 11,-0.2 2,-0.3 -0.722 35.3 172.1-105.7 153.3 19.7 34.2 20.3 75 99 A A E -C 84 0B 0 9,-2.3 9,-3.1 -2,-0.3 2,-0.5 -0.970 35.2-104.0-154.1 155.6 16.9 36.7 19.8 76 100 A F E -C 83 0B 30 -2,-0.3 2,-1.0 7,-0.2 7,-0.2 -0.759 20.7-150.4 -90.6 128.0 16.5 40.4 19.9 77 101 A D E >> -C 82 0B 32 5,-3.5 4,-2.0 -2,-0.5 5,-1.6 -0.851 9.8-168.5 -96.4 103.0 14.8 41.9 22.9 78 102 A A T 45S+ 0 0 66 -2,-1.0 -1,-0.2 3,-0.2 5,-0.1 0.802 82.9 54.4 -63.7 -30.1 13.2 45.0 21.4 79 103 A V T 45S+ 0 0 139 1,-0.2 -1,-0.2 -3,-0.1 -2,-0.0 0.938 119.2 31.2 -70.3 -47.4 12.4 46.4 24.9 80 104 A K T 45S- 0 0 139 2,-0.2 -2,-0.2 0, 0.0 -1,-0.2 0.660 104.8-129.6 -83.0 -21.0 15.9 46.2 26.3 81 105 A G T <5 + 0 0 46 -4,-2.0 2,-0.3 1,-0.3 -3,-0.2 0.883 68.3 104.5 73.8 40.0 17.4 46.8 22.9 82 106 A K E S- 0 0 49 1,-0.1 4,-1.9 -26,-0.0 5,-0.1 -0.947 75.8-119.1-165.9 153.2 25.1 33.2 17.2 101 125 A E H > S+ 0 0 76 -2,-0.3 4,-2.6 2,-0.2 5,-0.2 0.943 115.8 55.6 -64.9 -41.5 25.3 36.4 19.3 102 126 A K H > S+ 0 0 48 1,-0.2 4,-3.2 2,-0.2 -1,-0.2 0.929 106.3 49.4 -54.5 -49.0 27.3 38.0 16.5 103 127 A E H > S+ 0 0 12 1,-0.2 4,-2.4 2,-0.2 -1,-0.2 0.897 110.5 50.7 -59.0 -42.2 24.6 37.2 13.9 104 128 A f H X S+ 0 0 0 -4,-1.9 4,-2.5 1,-0.2 -1,-0.2 0.913 112.7 46.5 -63.1 -40.0 22.0 38.7 16.2 105 129 A R H X S+ 0 0 93 -4,-2.6 4,-1.8 1,-0.2 -2,-0.2 0.928 109.9 54.0 -67.9 -42.6 24.1 41.8 16.6 106 130 A E H < S+ 0 0 154 -4,-3.2 -2,-0.2 -5,-0.2 -1,-0.2 0.896 115.7 38.6 -58.1 -45.7 24.7 42.0 12.8 107 131 A Y H < S+ 0 0 61 -4,-2.4 -2,-0.2 -5,-0.2 -1,-0.2 0.912 127.2 30.0 -73.4 -46.2 21.0 41.9 12.0 108 132 A d H < S- 0 0 21 -4,-2.5 -2,-0.2 -5,-0.2 -3,-0.2 0.319 107.5-109.5-104.2 13.0 19.6 44.0 14.7 109 133 A G < 0 0 42 -4,-1.8 -1,-0.2 -5,-0.1 -2,-0.1 0.196 360.0 360.0 79.1 162.8 22.3 46.5 15.6 110 134 A V 0 0 169 -4,-0.1 -4,-0.0 -28,-0.1 -5,-0.0 0.182 360.0 360.0-144.6 360.0 24.5 46.9 18.6