==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/RNA 12-JUN-96 1BIV . COMPND 2 MOLECULE: BOVINE IMMUNODEFICIENCY VIRUS TAR RNA; . SOURCE 2 SYNTHETIC: YES; . AUTHOR X.YE,R.A.KUMAR,D.J.PATEL . 17 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 1983.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 5 29.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 11.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 5.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 65 B S 0 0 109 0, 0.0 5,-0.2 0, 0.0 6,-0.0 0.000 360.0 360.0 360.0 152.2 -4.3 2.7 1.0 2 66 B G - 0 0 55 2,-1.7 4,-0.1 3,-0.5 0, 0.0 0.090 360.0 -48.8-124.5-125.3 -5.7 5.7 3.0 3 67 B P S S+ 0 0 151 0, 0.0 3,-0.1 0, 0.0 0, 0.0 0.727 143.5 16.0 -94.0 -20.7 -8.7 8.2 2.4 4 68 B R S S- 0 0 197 1,-0.5 -2,-1.7 0, 0.0 3,-0.1 -0.258 121.2 -77.8 -98.1-160.1 -7.3 8.5 -1.2 5 69 B P S S- 0 0 69 0, 0.0 -3,-0.5 0, 0.0 -1,-0.5 0.264 74.2 -54.6 -64.9-149.5 -4.7 5.7 -2.2 6 70 B R - 0 0 136 -5,-0.2 3,-0.1 -4,-0.1 9,-0.0 -0.772 41.8-159.7 -82.3 143.0 -1.0 5.8 -0.9 7 71 B G - 0 0 37 -2,-0.3 8,-2.0 1,-0.2 2,-0.3 0.740 64.2 -18.6 -80.7 -41.1 1.0 9.0 -1.7 8 72 B T B -A 14 0A 56 6,-0.4 6,-0.3 2,-0.0 -1,-0.2 -0.982 57.9 -98.6-161.2 167.6 4.5 7.5 -1.3 9 73 B R S S- 0 0 127 4,-0.8 2,-0.2 -2,-0.3 4,-0.1 -0.174 71.3-100.9-101.3 42.6 7.0 4.9 -0.1 10 74 B G S S+ 0 0 64 1,-0.1 4,-0.0 2,-0.1 -1,-0.0 0.163 115.4 64.3 75.3 -10.1 8.1 7.0 3.0 11 75 B K S S- 0 0 183 -2,-0.2 2,-0.3 0, 0.0 -1,-0.1 -0.645 132.9 -74.5-133.6 63.4 11.4 8.5 1.8 12 76 B G S S+ 0 0 61 1,-0.2 2,-2.4 -4,-0.0 -2,-0.1 0.173 89.2 139.8 64.6 -11.6 9.7 10.6 -1.1 13 77 B R - 0 0 131 -2,-0.3 -4,-0.8 -4,-0.1 -1,-0.2 -0.324 46.8-154.2 -63.0 57.1 9.1 7.4 -3.4 14 78 B R B -A 8 0A 188 -2,-2.4 -6,-0.4 -6,-0.3 2,-0.2 -0.106 3.8-126.6 -56.5 134.0 5.6 8.8 -4.4 15 79 B I S S+ 0 0 39 -8,-2.0 -1,-0.1 1,-0.1 -6,-0.0 -0.473 74.9 69.2 -99.1 155.2 2.9 6.3 -5.5 16 80 B R 0 0 162 -2,-0.2 -1,-0.1 -8,-0.0 -2,-0.1 0.801 360.0 360.0 86.1 71.2 0.6 6.1 -8.7 17 81 B R 0 0 218 0, 0.0 -2,-0.1 0, 0.0 -3,-0.0 -0.047 360.0 360.0 -88.8 360.0 3.4 5.2 -11.2