==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN/DNA 03-JUL-98 1BJ6 . COMPND 2 MOLECULE: DNA (5'-D(*AP*CP*GP*CP*C)-3'); . SOURCE 2 SYNTHETIC: YES; . AUTHOR H.DEMENE,N.MORELLET,V.TEILLEUX,T.HUYNH-DINH,H.DE ROCQUIGNY, . 42 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4065.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 8 19.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 2.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 4.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 12 A N 0 0 218 0, 0.0 2,-0.3 0, 0.0 9,-0.0 0.000 360.0 360.0 360.0 155.0 5.4 22.1 10.7 2 13 A V - 0 0 60 11,-0.0 9,-2.1 10,-0.0 2,-0.4 -0.908 360.0-134.6-147.2 169.5 7.7 25.0 11.7 3 14 A K B -A 10 0A 101 -2,-0.3 7,-0.2 7,-0.2 11,-0.2 -0.977 38.1-104.1-130.3 139.6 11.0 26.6 10.7 4 15 A C - 0 0 4 5,-2.6 9,-0.2 -2,-0.4 7,-0.0 -0.201 12.6-144.9 -63.6 151.3 13.6 27.5 13.4 5 16 A F S S+ 0 0 64 3,-0.1 17,-0.3 2,-0.0 -1,-0.1 -0.232 95.5 40.0-109.6 39.9 14.0 31.2 14.5 6 17 A N S S+ 0 0 22 3,-0.1 8,-0.0 15,-0.1 15,-0.0 0.222 134.6 6.9-143.9 -85.7 17.8 30.6 15.0 7 18 A C S S- 0 0 66 12,-0.1 -2,-0.0 7,-0.1 14,-0.0 0.821 93.6-132.3 -76.9 -34.7 19.5 28.4 12.3 8 19 A G + 0 0 25 1,-0.2 -3,-0.1 4,-0.1 5,-0.0 0.693 51.5 145.6 89.4 22.8 16.3 28.3 10.3 9 20 A K - 0 0 137 -6,-0.1 -5,-2.6 1,-0.1 2,-0.3 -0.190 48.7-106.6 -74.0 178.3 16.0 24.6 9.5 10 21 A E B S+A 3 0A 157 -7,-0.2 -7,-0.2 1,-0.2 -1,-0.1 -0.795 91.4 39.3-110.2 153.1 12.6 22.9 9.3 11 22 A G S S+ 0 0 69 -9,-2.1 2,-0.3 -2,-0.3 -1,-0.2 0.527 106.1 63.4 88.1 10.8 11.0 20.5 11.8 12 23 A H - 0 0 47 -3,-0.3 2,-0.2 -10,-0.3 -1,-0.1 -0.976 69.2-130.5-158.5 154.1 12.1 22.4 15.0 13 24 A T >> - 0 0 52 -2,-0.3 3,-1.2 -9,-0.2 4,-1.1 -0.582 44.0 -93.8 -96.9 165.2 11.7 25.7 16.8 14 25 A A T 34 S+ 0 0 13 1,-0.3 3,-0.3 -11,-0.2 -10,-0.1 0.801 126.4 55.5 -51.1 -35.3 14.6 27.9 18.1 15 26 A R T 34 S+ 0 0 239 1,-0.2 -1,-0.3 -9,-0.0 6,-0.0 0.869 111.2 43.7 -61.4 -41.0 14.2 26.3 21.6 16 27 A N T <4 S+ 0 0 120 -3,-1.2 -1,-0.2 0, 0.0 -2,-0.2 0.512 92.7 112.6 -85.1 -10.2 14.7 22.8 20.0 17 28 A C < - 0 0 18 -4,-1.1 4,-0.1 -3,-0.3 -4,-0.0 -0.358 64.8-141.3 -66.2 144.2 17.6 24.0 17.8 18 29 A R S S+ 0 0 256 -2,-0.1 -1,-0.1 2,-0.1 -4,-0.0 0.940 79.3 80.3 -62.8 -55.4 21.1 22.6 18.5 19 30 A A S S- 0 0 40 1,-0.1 -12,-0.1 0, 0.0 2,-0.1 -0.055 89.1-104.2 -56.2 154.8 22.8 25.9 17.8 20 31 A P - 0 0 116 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 -0.356 48.7 -93.6 -74.2 166.9 23.0 28.8 20.3 21 32 A R - 0 0 209 1,-0.1 2,-0.2 -2,-0.1 -15,-0.1 -0.263 27.6-113.9 -88.7 168.2 20.7 31.8 19.7 22 33 A K - 0 0 86 -17,-0.3 2,-0.1 1,-0.1 -1,-0.1 -0.467 32.4-110.5 -89.3 161.0 20.9 35.2 18.0 23 34 A K S S+ 0 0 145 -2,-0.2 -1,-0.1 6,-0.1 11,-0.0 -0.365 77.1 4.2 -89.5 173.1 20.8 38.6 19.7 24 35 A G S S- 0 0 29 -2,-0.1 11,-0.3 10,-0.0 7,-0.3 -0.128 119.0 -15.6 48.0-144.5 18.1 41.3 19.5 25 36 A C - 0 0 3 5,-1.9 9,-0.1 9,-0.2 6,-0.0 -0.200 51.1-154.5 -73.0 169.5 15.0 40.2 17.6 26 37 A W S S+ 0 0 68 -4,-0.0 -1,-0.1 3,-0.0 -3,-0.0 0.644 87.0 56.8-113.9 -39.8 14.9 37.1 15.2 27 38 A K S S+ 0 0 124 1,-0.1 7,-0.0 3,-0.1 8,-0.0 0.983 136.3 0.6 -57.2 -66.1 12.0 38.1 12.8 28 39 A C S S- 0 0 72 2,-0.1 -1,-0.1 13,-0.0 7,-0.0 0.783 98.3-127.1 -94.3 -37.2 13.5 41.4 11.6 29 40 A G + 0 0 44 1,-0.3 2,-0.2 4,-0.0 -6,-0.1 0.477 55.4 142.7 106.1 6.4 16.7 41.2 13.7 30 41 A K - 0 0 135 -6,-0.2 -5,-1.9 1,-0.1 -1,-0.3 -0.559 43.4-125.9 -88.6 147.1 16.6 44.6 15.6 31 42 A E S S+ 0 0 114 -7,-0.3 2,-1.2 -2,-0.2 -1,-0.1 -0.108 84.4 50.8 -83.5 176.0 17.8 45.0 19.2 32 43 A G S S+ 0 0 91 1,-0.1 2,-0.2 -7,-0.0 -1,-0.2 -0.381 110.5 57.3 87.5 -53.1 15.9 46.5 22.2 33 44 A H S S- 0 0 36 -2,-1.2 2,-0.2 -3,-0.2 -1,-0.1 -0.648 74.8-136.5-106.5 164.0 13.0 44.2 21.3 34 45 A Q >> - 0 0 110 -2,-0.2 4,-2.1 -9,-0.1 3,-0.8 -0.699 40.8 -94.9-110.3 162.6 12.5 40.4 21.0 35 46 A M T 34 S+ 0 0 47 -11,-0.3 -10,-0.1 1,-0.3 -2,-0.0 0.605 126.6 54.2 -62.5 -11.0 10.5 38.7 18.2 36 47 A K T 34 S+ 0 0 174 1,-0.1 -1,-0.3 3,-0.0 -11,-0.0 0.834 114.6 39.7 -85.1 -38.8 7.4 38.6 20.4 37 48 A D T <4 S+ 0 0 106 -3,-0.8 -2,-0.2 2,-0.0 -1,-0.1 0.706 93.2 116.1 -75.0 -27.3 7.6 42.4 21.0 38 49 A C < + 0 0 30 -4,-2.1 -3,-0.0 1,-0.1 -4,-0.0 -0.179 21.8 147.9 -53.8 135.4 8.6 42.9 17.3 39 50 A T + 0 0 73 0, 0.0 -1,-0.1 0, 0.0 -4,-0.0 0.017 22.0 126.8-161.2 28.6 6.0 45.0 15.4 40 51 A E - 0 0 93 2,-0.0 -2,-0.0 1,-0.0 0, 0.0 0.968 36.7-179.9 -60.7 -56.6 8.1 46.9 12.8 41 52 A R 0 0 190 1,-0.2 -1,-0.0 0, 0.0 -13,-0.0 0.952 360.0 360.0 52.0 69.7 5.9 45.7 9.9 42 53 A Q 0 0 262 0, 0.0 -1,-0.2 0, 0.0 -2,-0.0 0.944 360.0 360.0 61.6 360.0 7.6 47.4 6.9