==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 23-JUN-98 1BJB . COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.-A.POULSEN,A.A.WATSON,D.J.CRAIK . 28 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2432.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 11 39.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 90 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 143.2 -2.7 -3.4 -0.4 2 2 A A - 0 0 87 1,-0.0 2,-0.2 4,-0.0 0, 0.0 0.894 360.0 -48.5 -86.4 -82.1 -3.8 -7.1 -0.4 3 3 A E S S+ 0 0 99 5,-0.1 -1,-0.0 3,-0.1 0, 0.0 -0.634 116.3 76.0-163.0 92.0 -6.2 -7.1 -3.4 4 4 A F S S+ 0 0 103 6,-0.2 7,-0.0 -2,-0.2 0, 0.0 0.195 99.5 41.3-173.9 -15.7 -8.8 -4.4 -3.5 5 5 A R S S+ 0 0 79 6,-0.1 5,-0.1 2,-0.1 11,-0.0 -0.297 117.3 46.5-141.0 45.8 -6.8 -1.4 -4.7 6 6 A H S S- 0 0 46 6,-0.0 4,-0.1 10,-0.0 -3,-0.1 0.321 136.6 -6.0-150.7 -48.5 -4.7 -3.2 -7.3 7 7 A D S S+ 0 0 119 2,-0.1 4,-0.1 3,-0.0 -2,-0.1 -0.032 135.2 48.2-150.1 32.3 -7.1 -5.3 -9.3 8 8 A S S S+ 0 0 69 2,-0.4 -5,-0.1 0, 0.0 3,-0.0 -0.048 126.7 14.8-167.3 41.3 -10.4 -4.9 -7.5 9 9 A G S S- 0 0 20 -3,-0.0 -5,-0.1 -4,-0.0 -2,-0.1 0.354 103.9-108.0 146.1 51.3 -10.7 -1.1 -7.0 10 10 A Y - 0 0 146 1,-0.2 -2,-0.4 -5,-0.1 -6,-0.2 0.109 25.8-114.8 36.3-146.3 -8.1 0.4 -9.3 11 11 A E >>> - 0 0 32 -4,-0.1 2,-2.1 -5,-0.1 5,-1.0 0.235 30.3-123.6-164.3 7.8 -5.0 1.9 -7.6 12 12 A V T 345 - 0 0 60 1,-0.2 -2,-0.1 2,-0.1 -6,-0.0 -0.205 31.9-118.3 69.6 -42.5 -5.3 5.6 -8.5 13 13 A H T 345S+ 0 0 109 -2,-2.1 -1,-0.2 -3,-0.0 -3,-0.0 0.839 101.0 82.9 75.5 40.2 -1.9 5.7 -10.1 14 14 A H T <45S+ 0 0 138 -3,-0.8 -2,-0.1 0, 0.0 0, 0.0 0.445 101.9 18.4-139.1 -28.3 -0.8 8.2 -7.5 15 15 A Q T >X5S+ 0 0 101 -4,-0.7 4,-2.0 3,-0.1 3,-0.8 0.652 117.6 59.7-117.9 -41.3 0.2 6.1 -4.6 16 16 A E H 3> S+ 0 0 77 -6,-0.2 4,-1.7 1,-0.2 -1,-0.3 0.665 106.9 60.1 -72.9 -15.3 3.4 3.9 -8.3 18 18 A V H <> S+ 0 0 79 -3,-0.8 4,-2.7 2,-0.2 -2,-0.2 0.914 108.5 39.4 -76.3 -47.7 5.0 5.7 -5.3 19 19 A F H X S+ 0 0 101 -4,-2.0 4,-1.2 2,-0.2 -2,-0.2 0.804 117.3 52.6 -72.5 -28.2 5.5 2.6 -3.3 20 20 A F H X S+ 0 0 101 -4,-1.5 4,-2.4 -5,-0.3 7,-0.3 0.889 108.9 49.2 -72.2 -40.4 6.5 0.9 -6.5 21 21 A A H X S+ 0 0 17 -4,-1.7 4,-2.8 1,-0.2 6,-1.9 0.946 112.2 48.4 -63.6 -46.0 9.0 3.7 -7.2 22 22 A E H < S+ 0 0 121 -4,-2.7 -1,-0.2 4,-0.2 -2,-0.2 0.774 107.6 56.8 -65.3 -25.2 10.3 3.2 -3.7 23 23 A D H < S+ 0 0 101 -4,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.952 111.4 40.9 -69.6 -50.0 10.4 -0.6 -4.4 24 24 A V H < S- 0 0 65 -4,-2.4 -2,-0.2 1,-0.1 -1,-0.2 0.937 129.7 -98.9 -59.9 -47.6 12.7 -0.1 -7.4 25 25 A G S < S- 0 0 44 -4,-2.8 -4,-0.1 -5,-0.2 -1,-0.1 -0.366 93.2 -22.8 159.8 -55.4 14.6 2.6 -5.4 26 26 A S S S- 0 0 80 -6,-0.1 -4,-0.2 -3,-0.0 -5,-0.2 -0.101 102.8 -82.9-170.1 36.5 12.9 5.7 -6.8 27 27 A N 0 0 84 -6,-1.9 -5,-0.1 -7,-0.3 -6,-0.1 0.788 360.0 360.0 55.7 30.4 11.8 4.3 -10.1 28 28 A K 0 0 232 -7,-0.3 -3,-0.1 0, 0.0 -4,-0.0 0.063 360.0 360.0 64.6 360.0 15.3 5.0 -11.4