==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER GLYCOPROTEIN 23-JUN-98 1BJC . COMPND 2 MOLECULE: AMYLOID BETA-PEPTIDE; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR S.-A.POULSEN,A.A.WATSON,D.J.CRAIK . 28 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3268.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 16 57.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 14.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 3 10.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 7 25.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A D 0 0 182 0, 0.0 4,-0.1 0, 0.0 3,-0.1 0.000 360.0 360.0 360.0 139.6 -10.6 -20.9 4.2 2 2 A A > - 0 0 45 1,-0.1 3,-1.5 2,-0.1 2,-0.6 0.974 360.0-179.3 60.1 60.7 -9.2 -21.2 0.6 3 3 A E T 3 S+ 0 0 139 1,-0.3 -1,-0.1 3,-0.0 3,-0.0 -0.062 79.6 50.5 -81.3 35.9 -8.3 -17.5 0.2 4 4 A F T > + 0 0 149 -2,-0.6 2,-2.5 -3,-0.1 3,-2.2 0.157 66.5 140.2-155.0 13.1 -7.1 -18.2 -3.3 5 5 A R T < + 0 0 193 -3,-1.5 -2,-0.0 1,-0.3 0, 0.0 -0.392 69.1 51.3 -68.3 72.0 -10.1 -20.1 -4.7 6 6 A H T 3 S- 0 0 134 -2,-2.5 -1,-0.3 -3,-0.0 -3,-0.0 0.192 98.7-124.7-177.5 -21.0 -9.9 -18.5 -8.1 7 7 A D < + 0 0 150 -3,-2.2 -2,-0.1 1,-0.1 3,-0.1 0.910 52.2 155.8 59.7 45.6 -6.3 -19.0 -9.2 8 8 A S - 0 0 73 -4,-0.2 2,-1.4 1,-0.2 -1,-0.1 0.845 32.7-157.2 -68.8 -35.0 -5.9 -15.3 -9.8 9 9 A G - 0 0 78 -5,-0.1 2,-0.3 2,-0.1 -1,-0.2 -0.380 63.8 -15.9 87.4 -55.7 -2.1 -15.5 -9.3 10 10 A Y - 0 0 203 -2,-1.4 2,-0.2 -3,-0.1 0, 0.0 -0.968 51.9-173.5-170.2 163.6 -1.9 -11.8 -8.4 11 11 A E + 0 0 117 -2,-0.3 -2,-0.1 1,-0.0 -3,-0.0 -0.635 8.6 172.5-172.3 104.7 -3.8 -8.5 -8.6 12 12 A V - 0 0 67 -2,-0.2 5,-0.1 2,-0.0 -1,-0.0 0.878 16.6-170.0 -82.0 -44.0 -2.3 -5.2 -7.5 13 13 A H + 0 0 163 1,-0.1 2,-0.3 4,-0.0 -1,-0.0 0.775 57.7 92.2 54.9 30.9 -5.3 -3.2 -8.8 14 14 A H >> - 0 0 97 2,-0.0 2,-1.6 0, 0.0 4,-1.5 -0.824 63.2-156.1-156.6 110.6 -3.2 -0.0 -8.3 15 15 A Q T 34 S+ 0 0 175 -2,-0.3 -2,-0.0 1,-0.2 0, 0.0 -0.282 90.8 66.0 -83.6 51.6 -1.0 1.7 -10.9 16 16 A F T 3> S+ 0 0 140 -2,-1.6 4,-1.7 3,-0.1 -1,-0.2 0.454 101.7 41.2-132.9 -50.4 1.1 3.3 -8.2 17 17 A L H <> S+ 0 0 99 -3,-0.6 4,-2.6 2,-0.2 -2,-0.2 0.935 122.6 42.9 -68.9 -46.8 2.7 0.2 -6.6 18 18 A V H X S+ 0 0 38 -4,-1.5 4,-2.8 1,-0.2 5,-0.3 0.893 108.6 59.6 -66.3 -38.0 3.2 -1.2 -10.1 19 19 A F H > S+ 0 0 140 -5,-0.3 4,-1.2 1,-0.2 -1,-0.2 0.895 109.1 44.5 -55.6 -40.0 4.4 2.3 -11.2 20 20 A F H X>S+ 0 0 138 -4,-1.7 4,-3.1 2,-0.2 5,-0.5 0.952 111.3 53.2 -68.8 -51.7 7.1 2.0 -8.6 21 21 A A H X5S+ 0 0 38 -4,-2.6 4,-2.0 1,-0.2 6,-0.5 0.898 108.3 49.1 -50.0 -50.8 8.0 -1.6 -9.5 22 22 A E H <5S+ 0 0 72 -4,-2.8 -1,-0.2 2,-0.2 -2,-0.2 0.817 120.1 37.7 -60.6 -35.2 8.4 -0.8 -13.2 23 23 A D H <5S+ 0 0 128 -4,-1.2 -2,-0.2 -3,-0.4 -1,-0.2 0.929 124.1 35.7 -82.1 -53.8 10.7 2.2 -12.4 24 24 A V H <5S+ 0 0 87 -4,-3.1 2,-0.3 -5,-0.1 -3,-0.2 0.917 122.9 41.3 -68.3 -49.4 12.7 0.9 -9.4 25 25 A G S ><