==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION/DNA 22-JUL-98 1BL0 . COMPND 2 MOLECULE: DNA (5'- . SOURCE 2 SYNTHETIC: YES; . AUTHOR S.DAVIES,R.G.RHEE,J.L.MARTIN,D.R.ROSNER . 116 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 6897.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 76 65.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 3 2.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 9.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 59 50.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 1 1 0 0 0 0 3 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 9 A D >>> 0 0 74 0, 0.0 4,-4.5 0, 0.0 5,-0.6 0.000 360.0 360.0 360.0 -42.9 0.0 35.6 75.6 2 10 A A H 3>5 + 0 0 46 1,-0.3 4,-2.0 2,-0.2 5,-0.1 0.854 360.0 46.7 -39.3 -47.1 0.8 39.1 77.0 3 11 A I H 345S+ 0 0 138 2,-0.2 -1,-0.3 1,-0.2 4,-0.2 0.895 121.8 33.7 -66.9 -41.2 -2.9 39.9 76.6 4 12 A T H X>5S+ 0 0 36 -3,-0.6 4,-2.5 2,-0.2 3,-0.5 0.861 119.3 49.5 -85.1 -37.8 -4.2 36.6 78.1 5 13 A I H 3X5S+ 0 0 0 -4,-4.5 4,-1.7 1,-0.2 -3,-0.2 0.901 106.4 57.6 -64.8 -39.7 -1.5 36.1 80.7 6 14 A H H 3X S+ 0 0 67 -3,-0.5 4,-2.1 -4,-0.2 3,-1.2 0.928 103.1 55.5 -88.4 -59.1 -5.6 38.7 82.4 8 16 A I H 3X S+ 0 0 10 -4,-2.5 4,-1.9 1,-0.3 -2,-0.2 0.827 102.8 63.8 -41.3 -37.0 -5.2 35.4 84.4 9 17 A L H 3X S+ 0 0 3 -4,-1.7 4,-2.4 2,-0.2 5,-0.3 0.956 103.6 44.2 -51.9 -53.8 -3.1 37.6 86.7 10 18 A D H X S+ 0 0 0 -4,-1.9 3,-2.1 -5,-0.3 4,-1.5 0.964 111.9 42.7 -68.6 -51.7 -5.7 35.4 90.4 13 21 A E H 3< S+ 0 0 50 -4,-2.4 4,-0.3 1,-0.3 -1,-0.2 0.832 108.8 61.2 -64.3 -28.6 -5.6 38.5 92.6 14 22 A D T 3< S+ 0 0 133 -4,-2.6 -1,-0.3 -5,-0.3 -2,-0.2 0.272 121.1 24.5 -77.3 15.8 -9.3 38.5 92.3 15 23 A N T X4 S+ 0 0 46 -3,-2.1 3,-0.7 -5,-0.1 -2,-0.2 0.482 85.1 86.8-141.0 -74.0 -9.1 35.1 94.0 16 24 A L T 3< S+ 0 0 1 -4,-1.5 2,-2.1 1,-0.3 -3,-0.1 0.494 77.7 85.4 -5.5 -62.1 -6.2 33.8 96.3 17 25 A E T 3 S- 0 0 62 -4,-0.3 -1,-0.3 1,-0.2 62,-0.1 0.397 120.7 -9.2 -31.4 -1.9 -8.1 35.4 99.2 18 26 A S S < S+ 0 0 76 -2,-2.1 -1,-0.2 -3,-0.7 -2,-0.2 0.203 111.4 94.7-164.0 -40.2 -10.1 32.3 99.4 19 27 A P - 0 0 24 0, 0.0 -1,-0.3 0, 0.0 -4,-0.1 -0.165 67.9-133.0 -65.2 156.0 -9.5 29.9 96.5 20 28 A L - 0 0 96 -3,-0.1 5,-0.1 2,-0.0 -3,-0.1 0.414 33.9-163.1 -80.6 -2.5 -7.0 27.1 96.5 21 29 A S + 0 0 5 4,-0.1 2,-0.1 1,-0.1 31,-0.1 0.701 18.6 177.1 16.8 59.4 -6.1 28.5 93.2 22 30 A L > - 0 0 73 1,-0.1 4,-2.7 30,-0.0 5,-0.3 -0.473 47.0 -99.2 -81.8 161.7 -4.2 25.3 92.2 23 31 A E H > S+ 0 0 50 1,-0.2 4,-1.6 2,-0.2 -1,-0.1 0.811 124.7 50.1 -49.5 -37.7 -2.7 24.9 88.7 24 32 A K H >> S+ 0 0 113 2,-0.2 4,-1.8 1,-0.2 3,-1.0 0.996 110.6 45.2 -65.7 -64.3 -5.7 22.9 87.6 25 33 A V H 3> S+ 0 0 44 1,-0.3 4,-0.6 2,-0.2 -2,-0.2 0.852 116.9 48.4 -48.7 -33.4 -8.3 25.4 88.8 26 34 A S H 3< S+ 0 0 0 -4,-2.7 3,-0.4 1,-0.2 -1,-0.3 0.838 104.4 60.6 -76.9 -30.0 -6.1 28.0 87.2 27 35 A E H << S+ 0 0 59 -4,-1.6 -2,-0.2 -3,-1.0 -1,-0.2 0.959 87.8 73.4 -55.3 -56.4 -6.0 25.9 84.1 28 36 A R H < S+ 0 0 160 -4,-1.8 2,-1.3 1,-0.1 -1,-0.2 0.773 87.0 68.4 -27.9 -51.8 -9.8 26.1 83.6 29 37 A S S < S- 0 0 39 -4,-0.6 2,-0.4 -3,-0.4 -1,-0.1 -0.642 120.3 -23.0 -79.6 100.1 -9.4 29.6 82.5 30 38 A G S S- 0 0 57 -2,-1.3 3,-0.1 -22,-0.0 -3,-0.1 -0.866 106.0 -14.4 112.9-133.7 -7.6 29.2 79.2 31 39 A Y S S- 0 0 120 -2,-0.4 2,-0.2 1,-0.2 0, 0.0 0.177 88.1 -43.8 -93.9-154.7 -5.5 26.2 78.0 32 40 A S >> - 0 0 50 1,-0.1 4,-2.6 4,-0.0 3,-0.6 -0.465 55.0-112.2 -78.1 151.3 -3.8 23.1 79.5 33 41 A K H 3> S+ 0 0 51 1,-0.3 4,-2.0 2,-0.2 5,-0.2 0.892 118.3 51.7 -53.7 -43.5 -1.9 23.5 82.7 34 42 A W H 3> S+ 0 0 179 2,-0.2 4,-1.9 1,-0.2 -1,-0.3 0.851 114.4 43.3 -61.8 -38.1 1.4 22.8 81.0 35 43 A H H <> S+ 0 0 61 -3,-0.6 4,-2.8 2,-0.2 5,-0.2 0.975 109.9 52.0 -72.6 -59.5 0.7 25.5 78.4 36 44 A L H X S+ 0 0 4 -4,-2.6 4,-2.5 1,-0.3 5,-0.2 0.883 113.1 50.2 -40.3 -43.2 -0.7 28.2 80.7 37 45 A Q H X S+ 0 0 67 -4,-2.0 4,-2.5 -5,-0.4 -1,-0.3 0.938 108.9 49.4 -63.7 -50.3 2.5 27.6 82.6 38 46 A R H X S+ 0 0 179 -4,-1.9 4,-2.4 2,-0.2 5,-0.3 0.968 115.7 43.3 -51.5 -56.9 4.7 27.9 79.5 39 47 A M H X S+ 0 0 2 -4,-2.8 4,-2.7 1,-0.2 -2,-0.2 0.935 115.0 48.3 -53.9 -57.6 3.1 31.2 78.5 40 48 A F H X S+ 0 0 0 -4,-2.5 4,-2.8 1,-0.2 6,-0.6 0.780 112.2 49.3 -55.4 -39.7 3.0 32.7 82.0 41 49 A K H X S+ 0 0 96 -4,-2.5 4,-3.7 2,-0.2 -1,-0.2 0.957 116.3 40.8 -65.7 -52.6 6.7 31.8 82.6 42 50 A K H < S+ 0 0 149 -4,-2.4 -2,-0.2 -5,-0.3 -1,-0.2 0.835 119.5 48.7 -63.2 -31.0 7.8 33.2 79.4 43 51 A E H < S+ 0 0 56 -4,-2.7 -2,-0.2 -5,-0.3 -1,-0.2 0.854 133.3 10.6 -75.8 -41.2 5.5 36.1 79.9 44 52 A T H < S- 0 0 41 -4,-2.8 -3,-0.2 2,-0.2 -2,-0.2 0.494 87.7-127.0-115.9 -14.3 6.5 36.9 83.6 45 53 A G S < S+ 0 0 54 -4,-3.7 2,-0.4 -5,-0.4 -4,-0.2 0.549 79.9 111.3 70.9 9.5 9.7 34.9 84.2 46 54 A H S S- 0 0 53 -6,-0.6 -2,-0.2 -5,-0.1 -1,-0.2 -0.960 76.2-120.2-118.7 125.4 7.8 33.6 87.3 47 55 A S > - 0 0 47 -2,-0.4 4,-1.5 1,-0.1 5,-0.2 -0.438 23.8-130.3 -62.3 132.3 6.6 30.0 87.6 48 56 A L H >> S+ 0 0 1 1,-0.2 4,-2.5 2,-0.2 3,-0.7 0.952 102.9 53.7 -49.6 -52.6 2.8 30.1 88.1 49 57 A G H 3> S+ 0 0 28 1,-0.2 4,-1.7 2,-0.2 -1,-0.2 0.884 112.4 40.4 -49.4 -53.9 2.8 27.8 91.2 50 58 A Q H 3> S+ 0 0 100 2,-0.2 4,-1.6 1,-0.2 -1,-0.2 0.647 112.3 57.9 -73.8 -19.8 5.4 29.8 93.3 51 59 A Y H - 0 0 83 0, 0.0 4,-1.6 0, 0.0 3,-0.3 -0.200 21.0-121.7 -52.3 142.1 -6.7 34.6 113.9 71 79 A I H > S+ 0 0 19 1,-0.2 4,-2.5 2,-0.2 5,-0.1 0.779 112.2 57.8 -62.8 -26.0 -4.2 32.6 112.0 72 80 A L H > S+ 0 0 89 1,-0.2 4,-2.2 2,-0.2 -1,-0.2 0.922 107.8 47.9 -67.7 -37.9 -6.5 29.6 111.8 73 81 A Y H > S+ 0 0 81 -3,-0.3 4,-1.6 1,-0.2 -2,-0.2 0.818 112.1 49.3 -70.1 -26.4 -9.0 31.8 110.2 74 82 A L H X S+ 0 0 0 -4,-1.6 4,-1.4 2,-0.2 6,-0.2 0.847 108.3 53.6 -76.3 -37.4 -6.3 33.0 107.8 75 83 A A H <>S+ 0 0 0 -4,-2.5 5,-2.8 -5,-0.2 3,-0.4 0.967 113.9 41.1 -57.1 -54.9 -5.3 29.5 107.0 76 84 A E H ><5S+ 0 0 144 -4,-2.2 3,-0.8 1,-0.2 -2,-0.2 0.847 113.0 55.4 -61.2 -40.6 -8.9 28.4 106.1 77 85 A R H 3<5S+ 0 0 44 -4,-1.6 -1,-0.2 -5,-0.2 -2,-0.2 0.731 109.5 44.3 -71.8 -26.0 -9.5 31.7 104.2 78 86 A Y T 3<5S- 0 0 0 -4,-1.4 -60,-0.3 -3,-0.4 -1,-0.2 0.374 126.0 -91.8-104.3 7.2 -6.6 31.4 101.9 79 87 A G T < 5S+ 0 0 18 -3,-0.8 2,-0.4 1,-0.3 -3,-0.2 0.553 75.1 141.4 107.8 11.2 -7.0 27.7 101.1 80 88 A F < - 0 0 24 -5,-2.8 -1,-0.3 -6,-0.2 -2,-0.1 -0.703 51.3-137.9 -91.8 137.0 -5.0 25.9 103.6 81 89 A E S S- 0 0 170 -2,-0.4 2,-0.3 1,-0.1 -1,-0.1 0.531 80.3 -14.3 -69.7 -7.1 -6.3 22.7 105.0 82 90 A S > - 0 0 33 -7,-0.1 4,-1.4 1,-0.1 5,-0.1 -0.993 69.1 -92.8-176.5 177.5 -5.1 23.7 108.4 83 91 A Q H > S+ 0 0 71 -2,-0.3 4,-3.6 2,-0.2 5,-0.2 0.914 119.2 54.1 -72.3 -44.0 -3.0 26.0 110.7 84 92 A Q H > S+ 0 0 128 1,-0.2 4,-2.6 2,-0.2 5,-0.2 0.879 107.3 51.1 -57.4 -43.8 -0.1 23.6 110.7 85 93 A T H > S+ 0 0 46 2,-0.2 4,-1.8 1,-0.2 -1,-0.2 0.900 116.4 40.2 -62.7 -41.7 0.0 23.5 106.9 86 94 A L H X S+ 0 0 0 -4,-1.4 4,-2.9 2,-0.2 5,-0.2 0.859 111.5 57.6 -74.1 -40.5 0.0 27.3 106.8 87 95 A T H X S+ 0 0 41 -4,-3.6 4,-2.4 2,-0.2 -2,-0.2 0.933 111.3 42.4 -54.0 -49.1 2.4 27.6 109.7 88 96 A R H X S+ 0 0 163 -4,-2.6 4,-1.8 2,-0.2 -2,-0.2 0.888 115.9 47.7 -68.5 -39.7 5.0 25.4 107.7 89 97 A T H X S+ 0 0 30 -4,-1.8 4,-1.7 -5,-0.2 -2,-0.2 0.924 114.1 46.9 -64.5 -47.7 4.5 27.2 104.4 90 98 A F H >X S+ 0 0 0 -4,-2.9 4,-2.7 2,-0.2 3,-0.5 0.961 112.7 50.4 -55.1 -49.9 4.7 30.6 106.0 91 99 A K H 3X S+ 0 0 87 -4,-2.4 4,-2.0 1,-0.3 -1,-0.2 0.826 110.6 50.4 -57.6 -38.6 7.8 29.5 107.9 92 100 A N H 3< S+ 0 0 112 -4,-1.8 -1,-0.3 2,-0.2 -2,-0.2 0.781 115.7 40.8 -70.9 -31.1 9.3 28.2 104.7 93 101 A Y H << S+ 0 0 43 -4,-1.7 -2,-0.2 -3,-0.5 -1,-0.2 0.821 133.5 19.8 -90.8 -31.0 8.7 31.5 102.8 94 102 A F H < S- 0 0 10 -4,-2.7 -3,-0.2 2,-0.2 -2,-0.2 0.566 90.9-127.8-114.1 -20.2 9.6 33.9 105.7 95 103 A D S < S+ 0 0 90 -4,-2.0 -4,-0.2 -5,-0.5 -3,-0.1 0.684 87.4 85.4 73.2 20.1 11.8 31.8 108.0 96 104 A V S S- 0 0 17 -6,-0.3 -2,-0.2 -5,-0.0 -1,-0.2 -0.960 83.2-118.8-150.0 126.8 9.5 33.0 110.9 97 105 A P > - 0 0 34 0, 0.0 4,-2.1 0, 0.0 5,-0.2 -0.226 36.4-101.1 -62.9 168.6 6.2 31.3 111.8 98 106 A P H > S+ 0 0 2 0, 0.0 4,-1.8 0, 0.0 5,-0.1 0.866 115.9 44.8 -62.3 -48.9 3.0 33.4 111.5 99 107 A H H > S+ 0 0 110 2,-0.2 4,-2.0 1,-0.2 3,-0.2 0.962 114.5 48.0 -65.1 -51.3 2.4 34.3 115.1 100 108 A K H 4 S+ 0 0 133 1,-0.3 -1,-0.2 2,-0.2 3,-0.1 0.906 113.5 50.3 -53.3 -40.7 6.0 35.3 115.8 101 109 A Y H >< S+ 0 0 6 -4,-2.1 3,-1.0 1,-0.2 -1,-0.3 0.854 106.8 56.4 -64.9 -32.8 5.9 37.3 112.6 102 110 A R H 3< S+ 0 0 21 -4,-1.8 -2,-0.2 -3,-0.2 -1,-0.2 0.892 106.3 49.0 -66.1 -39.3 2.7 38.9 113.8 103 111 A M T 3< S+ 0 0 124 -4,-2.0 2,-0.4 -5,-0.1 -1,-0.2 -0.102 93.3 90.5 -96.1 36.1 4.3 40.2 117.0 104 112 A T < - 0 0 38 -3,-1.0 -4,-0.0 1,-0.2 0, 0.0 -0.987 47.4-169.5-138.5 131.0 7.4 41.8 115.6 105 113 A N S S+ 0 0 145 -2,-0.4 -1,-0.2 1,-0.1 -40,-0.0 0.992 85.4 52.8 -77.4 -64.1 8.0 45.4 114.5 106 114 A M S S+ 0 0 187 2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 0.795 83.6 99.3 -41.7 -46.3 11.4 45.3 112.8 107 115 A Q + 0 0 81 1,-0.1 -3,-0.1 2,-0.1 2,-0.1 -0.317 65.6 174.5 -45.2 114.8 10.2 42.4 110.6 108 116 A G - 0 0 35 4,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.180 46.1 -52.6-114.9-155.2 9.3 44.5 107.5 109 117 A E S > S+ 0 0 120 -2,-0.1 3,-2.3 2,-0.1 -2,-0.1 0.484 80.9 145.6 -64.4 -4.2 8.2 44.4 103.8 110 118 A S T 3 + 0 0 76 1,-0.3 -3,-0.0 -16,-0.0 0, 0.0 -0.123 68.2 4.4 -41.9 124.4 11.1 42.0 103.4 111 119 A R T 3 S+ 0 0 119 1,-0.3 -1,-0.3 0, 0.0 2,-0.2 0.409 87.8 150.6 75.6 7.7 10.2 39.2 100.7 112 120 A F < - 0 0 35 -3,-2.3 2,-0.4 -54,-0.1 -1,-0.3 -0.448 31.3-156.9 -69.6 135.9 6.9 40.7 99.8 113 121 A L - 0 0 34 -59,-0.5 -54,-0.1 -2,-0.2 -55,-0.1 -0.944 10.7-145.1-109.9 133.6 5.8 40.0 96.2 114 122 A H - 0 0 91 -2,-0.4 2,-3.5 1,-0.1 -59,-0.1 -0.798 38.4 -68.2-108.5 151.6 3.3 42.3 94.6 115 123 A P 0 0 54 0, 0.0 -102,-0.2 0, 0.0 -103,-0.1 0.144 360.0 360.0 -6.0 -6.4 0.4 41.7 92.0 116 124 A L 0 0 132 -2,-3.5 -72,-0.1 -72,-0.0 -3,-0.0 0.351 360.0 360.0-141.2 360.0 2.3 40.8 88.7