==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RNA BINDING 01-MAR-05 2BL5 . COMPND 2 MOLECULE: MGC83862 PROTEIN; . SOURCE 2 ORGANISM_SCIENTIFIC: XENOPUS LAEVIS; . AUTHOR M.L.MAGUIRE,G.GULER-GANE,D.NIETLISPACH,A.R.C.RAINE,A.M.ZORN, . 134 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 9369.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 99 73.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 14 10.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 22 16.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 15 11.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 41 30.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 3 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 1 2 0 1 0 0 0 1 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A Q 0 0 141 0, 0.0 2,-0.5 0, 0.0 77,-0.2 0.000 360.0 360.0 360.0 175.1 -10.6 14.4 -10.5 2 2 A L E -A 77 0A 51 75,-2.6 75,-2.7 77,-0.2 2,-0.4 -0.949 360.0-179.0-115.9 132.9 -7.1 13.0 -10.4 3 3 A Q E -A 76 0A 61 -2,-0.5 2,-0.5 73,-0.2 73,-0.2 -0.998 12.0-168.5-130.8 133.2 -6.3 9.5 -9.2 4 4 A E E -A 75 0A 67 71,-1.8 71,-2.0 -2,-0.4 2,-0.7 -0.978 15.1-156.2-119.0 118.6 -3.0 7.7 -8.9 5 5 A K E -A 74 0A 109 -2,-0.5 2,-1.0 69,-0.2 69,-0.3 -0.835 6.9-161.8-104.4 117.5 -3.4 4.0 -8.2 6 6 A L E -A 73 0A 48 67,-3.8 67,-2.8 -2,-0.7 2,-0.2 -0.814 23.0-147.0 -98.1 96.4 -0.5 2.2 -6.5 7 7 A Y E -A 72 0A 130 -2,-1.0 65,-0.2 65,-0.3 64,-0.1 -0.426 20.9-176.8 -71.6 134.8 -1.2 -1.4 -7.2 8 8 A V - 0 0 10 63,-1.6 2,-1.0 -2,-0.2 10,-0.1 -0.942 30.6-128.7-125.8 111.9 -0.3 -4.2 -4.9 9 9 A P >> - 0 0 52 0, 0.0 4,-1.4 0, 0.0 3,-1.2 -0.378 23.5-175.0 -66.2 97.6 -1.1 -7.6 -6.4 10 10 A V T 34 S+ 0 0 30 -2,-1.0 6,-0.2 1,-0.3 62,-0.0 0.740 85.6 63.1 -65.8 -21.5 -3.2 -9.2 -3.6 11 11 A K T 34 S+ 0 0 157 1,-0.2 -1,-0.3 60,-0.1 59,-0.0 0.790 104.4 48.0 -68.3 -28.4 -3.2 -12.3 -5.8 12 12 A E T <4 S+ 0 0 137 -3,-1.2 -2,-0.2 1,-0.2 -1,-0.2 0.796 117.6 41.4 -79.5 -32.6 0.6 -12.3 -5.3 13 13 A Y < + 0 0 82 -4,-1.4 -1,-0.2 1,-0.2 5,-0.2 -0.679 58.3 151.4-121.8 75.3 0.3 -11.8 -1.6 14 14 A P S S+ 0 0 99 0, 0.0 -1,-0.2 0, 0.0 -2,-0.1 0.788 84.1 47.7 -69.5 -25.8 -2.5 -14.1 -0.2 15 15 A D S S+ 0 0 153 -3,-0.2 2,-0.7 1,-0.1 -2,-0.1 0.562 103.5 69.7 -93.1 -11.9 -0.6 -14.2 3.1 16 16 A F S S- 0 0 28 -6,-0.2 2,-1.1 -3,-0.2 -1,-0.1 -0.908 70.8-155.6-112.9 108.1 -0.0 -10.5 3.2 17 17 A N > - 0 0 99 -2,-0.7 4,-1.7 1,-0.2 5,-0.2 -0.687 10.1-175.6 -81.5 98.3 -3.1 -8.5 3.9 18 18 A F H > S+ 0 0 1 -2,-1.1 4,-3.3 -5,-0.2 5,-0.3 0.839 87.9 53.9 -62.9 -31.2 -2.4 -5.0 2.4 19 19 A V H >>S+ 0 0 31 2,-0.2 5,-1.8 1,-0.2 4,-1.5 0.968 111.3 42.3 -64.5 -52.6 -5.8 -4.0 3.8 20 20 A G H 45S+ 0 0 28 1,-0.2 -2,-0.2 3,-0.2 -1,-0.2 0.728 120.8 46.3 -65.8 -20.9 -4.9 -5.2 7.3 21 21 A R H <5S+ 0 0 46 -4,-1.7 -2,-0.2 3,-0.2 -1,-0.2 0.869 123.1 29.8 -84.6 -42.6 -1.5 -3.6 6.7 22 22 A I H <5S+ 0 0 4 -4,-3.3 7,-0.2 -5,-0.2 8,-0.2 0.960 140.4 9.1 -89.1 -57.3 -2.6 -0.3 5.3 23 23 A L T X5S+ 0 0 40 -4,-1.5 4,-1.0 -5,-0.3 -3,-0.2 0.500 106.4 92.7-104.7 -3.8 -6.0 0.7 6.8 24 24 A G T 4> + 0 0 110 -6,-0.2 3,-1.9 1,-0.2 4,-0.8 0.153 65.9 117.8-108.0 18.2 -3.5 2.6 10.5 27 27 A G H 3X + 0 0 24 -4,-1.0 4,-1.6 -3,-0.3 3,-0.4 0.802 67.3 72.7 -52.0 -28.9 -6.8 3.4 8.8 28 28 A L H 3> S+ 0 0 132 -3,-0.4 4,-2.4 1,-0.2 -1,-0.3 0.869 90.8 56.4 -51.8 -40.3 -6.5 6.7 10.7 29 29 A T H <> S+ 0 0 51 -3,-1.9 4,-2.9 1,-0.2 -1,-0.2 0.884 101.8 54.6 -66.2 -36.5 -3.7 7.7 8.4 30 30 A A H X S+ 0 0 16 -4,-0.8 4,-1.7 -3,-0.4 11,-0.5 0.896 111.6 46.2 -62.6 -37.6 -5.9 7.3 5.3 31 31 A K H X S+ 0 0 118 -4,-1.6 4,-2.2 2,-0.2 -2,-0.2 0.881 111.5 51.2 -69.4 -40.3 -8.4 9.6 7.0 32 32 A Q H X S+ 0 0 87 -4,-2.4 4,-3.0 1,-0.2 5,-0.4 0.900 107.5 53.8 -65.9 -39.8 -5.6 12.0 7.9 33 33 A L H X>S+ 0 0 14 -4,-2.9 4,-2.6 2,-0.2 6,-0.9 0.923 111.7 43.2 -62.0 -44.2 -4.4 12.1 4.3 34 34 A E H X5S+ 0 0 79 -4,-1.7 4,-0.6 1,-0.2 -1,-0.2 0.887 117.1 47.8 -71.1 -36.1 -7.8 13.0 2.9 35 35 A A H <5S+ 0 0 71 -4,-2.2 -2,-0.2 -5,-0.1 -1,-0.2 0.898 126.3 26.2 -67.2 -42.4 -8.4 15.5 5.6 36 36 A E H <5S+ 0 0 122 -4,-3.0 -3,-0.2 -5,-0.2 -2,-0.2 0.891 128.4 37.3 -92.9 -46.3 -4.9 17.2 5.3 37 37 A T H <5S- 0 0 14 -4,-2.6 51,-0.3 -5,-0.4 -3,-0.2 0.722 99.3-124.4 -82.5 -20.1 -3.8 16.6 1.7 38 38 A G S < S- 0 0 0 21,-1.3 3,-0.8 26,-0.3 2,-0.6 -0.570 105.3 -18.4 94.6-168.8 -9.7 -3.8 -4.9 46 46 A K T 3 S+ 0 0 72 23,-0.5 -27,-0.2 1,-0.2 25,-0.1 -0.627 125.8 30.5 -80.8 115.1 -11.1 -6.4 -2.6 47 47 A G T 3 S+ 0 0 9 -2,-0.6 -1,-0.2 16,-0.3 17,-0.1 0.582 71.1 124.2 119.9 17.2 -11.3 -5.4 1.0 48 48 A S S < S- 0 0 22 -3,-0.8 -5,-0.1 15,-0.4 -2,-0.1 0.984 100.9 -2.5 -67.2 -60.3 -11.8 -1.6 1.0 49 49 A M S S+ 0 0 78 14,-0.2 2,-2.1 2,-0.1 -1,-0.2 -0.235 84.3 158.0-124.3 36.0 -15.0 -1.5 3.1 50 50 A R + 0 0 132 4,-0.1 2,-0.1 13,-0.1 -1,-0.0 0.123 22.0 142.5 -57.8 24.7 -15.3 -5.3 3.4 51 51 A D > - 0 0 81 -2,-2.1 4,-2.2 1,-0.1 5,-0.2 -0.460 56.8-133.2 -68.5 140.3 -17.5 -4.8 6.5 52 52 A K H > S+ 0 0 150 1,-0.2 4,-1.1 2,-0.2 -1,-0.1 0.899 109.2 52.1 -63.6 -39.8 -20.3 -7.3 6.8 53 53 A K H >>S+ 0 0 126 1,-0.2 4,-2.7 2,-0.2 5,-0.8 0.876 108.7 53.0 -62.1 -34.5 -22.8 -4.6 7.6 54 54 A K H 45S+ 0 0 49 1,-0.2 4,-0.3 2,-0.2 -2,-0.2 0.917 105.4 50.6 -71.1 -42.0 -21.6 -2.8 4.5 55 55 A E H <5S+ 0 0 81 -4,-2.2 -1,-0.2 3,-0.2 -2,-0.2 0.737 114.7 48.5 -68.1 -20.6 -22.1 -5.7 2.1 56 56 A E H <5S- 0 0 126 -4,-1.1 -2,-0.2 -5,-0.2 -1,-0.2 0.950 136.9 -1.1 -79.8 -57.1 -25.6 -5.9 3.6 57 57 A Q T <5S+ 0 0 139 -4,-2.7 -3,-0.2 -5,-0.1 -2,-0.1 0.804 134.4 50.1-106.8 -38.9 -26.8 -2.3 3.4 58 58 A N S > S- 0 0 110 -3,-1.2 3,-2.8 -7,-0.2 4,-2.3 -0.393 87.5 -77.9 -90.9 165.6 -21.5 1.2 -3.5 62 62 A P H 3> S+ 0 0 49 0, 0.0 4,-2.5 0, 0.0 5,-0.2 0.659 126.3 65.5 -28.2 -32.5 -17.9 2.3 -4.4 63 63 A N H 34 S+ 0 0 4 -5,-0.3 -15,-0.4 1,-0.2 -16,-0.3 0.909 115.9 26.6 -66.0 -41.5 -16.5 -0.2 -1.9 64 64 A W H <> S+ 0 0 27 -3,-2.8 4,-0.7 -6,-0.3 -1,-0.2 0.699 113.3 70.7 -90.5 -24.4 -17.9 -3.1 -3.8 65 65 A E H < S+ 0 0 106 -4,-2.3 3,-0.3 1,-0.2 -2,-0.2 0.919 114.7 25.6 -54.3 -48.0 -17.6 -1.1 -7.0 66 66 A H T >< S+ 0 0 3 -4,-2.5 3,-1.6 -5,-0.2 -21,-1.3 0.395 101.2 90.8 -97.0 1.0 -13.8 -1.3 -6.8 67 67 A L T 34 S+ 0 0 30 1,-0.3 -2,-0.2 -5,-0.2 -1,-0.2 0.771 82.8 59.1 -62.2 -24.7 -14.1 -4.6 -4.8 68 68 A N T 3< S+ 0 0 126 -4,-0.7 -1,-0.3 -3,-0.3 -2,-0.1 0.490 94.9 80.2 -87.7 -3.8 -14.0 -6.3 -8.2 69 69 A E S < S- 0 0 52 -3,-1.6 -23,-0.5 -5,-0.1 2,-0.3 -0.390 97.5 -91.6 -85.3 173.9 -10.6 -4.6 -8.9 70 70 A D - 0 0 19 -25,-0.2 -26,-0.1 -2,-0.1 -62,-0.1 -0.735 57.3 -84.5 -88.7 142.7 -7.3 -6.0 -7.5 71 71 A L + 0 0 3 -2,-0.3 -63,-1.6 -25,-0.1 -26,-0.3 -0.183 67.7 149.2 -52.5 117.8 -6.3 -4.5 -4.2 72 72 A H E -AB 7 44A 2 -28,-2.9 -28,-2.9 -65,-0.2 2,-0.6 -0.991 46.0-117.2-147.7 158.4 -4.4 -1.3 -4.7 73 73 A V E -AB 6 43A 0 -67,-2.8 -67,-3.8 -2,-0.3 2,-0.5 -0.845 32.6-171.2-103.7 121.7 -3.9 2.0 -2.9 74 74 A L E -AB 5 42A 0 -32,-2.3 -32,-2.3 -2,-0.6 2,-0.9 -0.946 19.4-150.7-122.6 119.4 -5.2 5.0 -4.7 75 75 A I E -AB 4 41A 2 -71,-2.0 -71,-1.8 -2,-0.5 2,-0.8 -0.777 19.7-166.6 -82.9 109.2 -4.8 8.6 -3.8 76 76 A T E +AB 3 40A 1 -36,-1.0 -36,-2.6 -2,-0.9 2,-0.6 -0.861 8.6 179.2-103.7 106.6 -7.9 10.3 -5.1 77 77 A V E -AB 2 39A 2 -75,-2.7 -75,-2.6 -2,-0.8 2,-1.3 -0.919 17.7-154.2-115.4 115.9 -7.5 14.0 -5.2 78 78 A E + 0 0 113 -40,-0.7 2,-0.3 -2,-0.6 -2,-0.0 -0.723 63.3 66.0 -94.0 90.5 -10.3 16.1 -6.5 79 79 A D S S- 0 0 87 -2,-1.3 -77,-0.2 2,-0.0 -2,-0.1 -0.893 77.4-118.1 172.2 165.2 -8.7 19.2 -7.8 80 80 A A + 0 0 92 -2,-0.3 2,-0.3 -79,-0.1 -2,-0.0 0.456 69.8 123.6 -99.1 -3.8 -6.3 20.5 -10.4 81 81 A Q > - 0 0 92 1,-0.2 4,-1.7 2,-0.1 5,-0.1 -0.418 48.1-161.1 -68.1 122.6 -3.7 21.7 -8.0 82 82 A N H > S+ 0 0 116 -2,-0.3 4,-2.1 1,-0.2 -1,-0.2 0.818 95.9 60.7 -68.4 -31.9 -0.2 20.2 -8.5 83 83 A R H > S+ 0 0 195 2,-0.2 4,-1.4 1,-0.2 -1,-0.2 0.866 102.7 53.9 -61.0 -35.2 0.6 21.3 -4.9 84 84 A A H >> S+ 0 0 12 2,-0.2 4,-1.8 1,-0.2 3,-1.2 0.994 108.6 44.8 -59.1 -61.8 -2.3 19.1 -3.9 85 85 A E H 3X S+ 0 0 56 -4,-1.7 4,-2.6 1,-0.3 -2,-0.2 0.809 109.3 58.0 -58.1 -32.7 -1.0 15.9 -5.6 86 86 A L H 3X S+ 0 0 79 -4,-2.1 4,-1.6 2,-0.2 -1,-0.3 0.886 106.8 48.9 -62.1 -38.3 2.5 16.7 -4.2 87 87 A K H > S+ 0 0 86 -2,-0.2 4,-3.1 1,-0.2 3,-0.9 -0.338 102.7 68.4 69.5 -55.2 14.0 -1.6 9.7 108 108 A S H 3> S+ 0 0 45 -2,-2.8 4,-3.1 1,-0.3 5,-0.3 0.826 89.5 64.2 -58.9 -31.0 13.4 -0.7 6.1 109 109 A L H 3> S+ 0 0 105 1,-0.2 4,-0.6 2,-0.2 -1,-0.3 0.879 112.9 33.0 -60.0 -38.2 12.9 2.9 7.3 110 110 A K H <> S+ 0 0 153 -3,-0.9 4,-2.0 2,-0.2 -2,-0.2 0.876 120.1 50.1 -85.6 -41.3 16.5 2.9 8.5 111 111 A K H X>S+ 0 0 89 -4,-3.1 4,-2.3 1,-0.2 5,-2.0 0.864 110.8 49.8 -67.0 -36.6 18.0 0.6 5.8 112 112 A M H <5S+ 0 0 61 -4,-3.1 -1,-0.2 -5,-0.2 -2,-0.2 0.782 110.6 50.0 -75.6 -27.7 16.3 2.6 3.0 113 113 A K H <5S+ 0 0 142 -4,-0.6 -2,-0.2 -5,-0.3 -1,-0.2 0.884 122.1 34.1 -73.4 -36.5 17.7 5.9 4.4 114 114 A L H <5S+ 0 0 138 -4,-2.0 4,-0.3 3,-0.1 -2,-0.2 0.986 139.6 1.0 -83.6 -66.0 21.2 4.4 4.6 115 115 A M T ><5S+ 0 0 84 -4,-2.3 3,-1.7 -5,-0.2 -3,-0.2 0.907 127.8 54.6 -95.1 -48.8 21.7 2.0 1.7 116 116 A E G > > S- 0 0 54 -2,-0.5 4,-3.1 -3,-0.1 3,-2.1 -0.947 77.2 -68.4-164.4 177.8 26.1 3.9 -7.4 122 122 A G T 34 S+ 0 0 77 1,-0.3 4,-0.1 -2,-0.3 -2,-0.0 0.798 125.8 60.6 -49.9 -35.7 29.9 4.2 -8.0 123 123 A T T 34 S+ 0 0 117 1,-0.1 -1,-0.3 2,-0.1 -3,-0.1 0.801 127.2 12.4 -63.9 -28.6 30.6 2.0 -5.0 124 124 A Y T <4 S+ 0 0 127 -3,-2.1 2,-2.9 -5,-0.1 -2,-0.2 0.789 72.4 166.3-114.5 -52.6 28.7 -0.9 -6.5 125 125 A R S >< S+ 0 0 192 -4,-3.1 3,-1.9 1,-0.2 4,-0.2 -0.372 76.3 57.6 67.0 -66.9 28.0 -0.1 -10.2 126 126 A D G > S+ 0 0 103 -2,-2.9 3,-1.9 1,-0.3 4,-0.3 0.684 86.3 78.2 -70.8 -16.4 26.9 -3.7 -11.0 127 127 A A G > S+ 0 0 25 1,-0.3 3,-0.8 -6,-0.2 -1,-0.3 0.665 77.9 76.7 -63.5 -14.3 24.2 -3.5 -8.4 128 128 A N G < S+ 0 0 93 -3,-1.9 3,-0.3 1,-0.2 -1,-0.3 0.783 88.7 55.2 -65.4 -27.6 22.4 -1.5 -11.0 129 129 A L G < S+ 0 0 137 -3,-1.9 -1,-0.2 1,-0.3 -2,-0.2 0.634 125.0 19.9 -82.3 -13.4 21.6 -4.8 -12.8 130 130 A K S < S+ 0 0 155 -3,-0.8 -1,-0.3 -4,-0.3 -2,-0.1 -0.587 73.3 166.7-159.4 86.3 20.0 -6.2 -9.7 131 131 A S > - 0 0 10 -3,-0.3 3,-0.6 -2,-0.1 -3,-0.1 -0.818 36.2-134.6-102.0 145.1 18.8 -3.9 -6.9 132 132 A P T 3 S+ 0 0 106 0, 0.0 2,-0.8 0, 0.0 -1,-0.1 0.884 103.3 50.3 -63.7 -38.9 16.5 -5.1 -4.1 133 133 A A T 3 0 0 53 1,-0.2 -14,-0.1 -3,-0.0 -3,-0.0 -0.499 360.0 360.0-102.5 61.2 14.3 -2.0 -4.4 134 134 A L < 0 0 169 -2,-0.8 -1,-0.2 -3,-0.6 -4,-0.0 0.964 360.0 360.0 -76.7 360.0 13.6 -2.1 -8.1