==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEOCAPSID PROTEIN 02-MAR-05 2BL6 . COMPND 2 MOLECULE: NUCLEOCAPSID PROTEIN P11; . SOURCE 2 SYNTHETIC: YES; . AUTHOR P.AMODEO,M.A.CASTIGLIONE-MORELLI,A.OSTUNI,A.BAVOSO . 37 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 2915.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 12 32.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 2 5.4 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 1 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 5 13.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 2 5.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 2.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 22 A Q 0 0 124 0, 0.0 10,-2.5 0, 0.0 2,-0.3 0.000 360.0 360.0 360.0-178.9 -6.3 -1.1 -6.3 2 23 A T - 0 0 61 8,-0.2 18,-2.8 7,-0.2 19,-0.3 -0.892 360.0 -99.4-117.9 144.4 -6.8 -3.2 -3.1 3 24 A C B -A 19 0A 2 5,-2.5 4,-0.2 -2,-0.3 10,-0.0 -0.249 11.2-137.9 -63.8 148.9 -6.3 -2.0 0.6 4 25 A Y S S+ 0 0 60 14,-1.3 -1,-0.1 2,-0.1 -2,-0.0 0.707 102.9 5.4 -66.6 -22.9 -3.2 -2.8 2.7 5 26 A N S S+ 0 0 122 13,-0.2 -1,-0.1 3,-0.1 -2,-0.0 0.643 122.6 60.0-139.4 -39.6 -5.5 -3.5 5.7 6 27 A C S S- 0 0 55 2,-0.1 -2,-0.1 1,-0.1 -4,-0.0 0.719 84.8-140.9 -68.0 -25.6 -9.3 -3.4 4.9 7 28 A G + 0 0 53 1,-0.2 -1,-0.1 -4,-0.2 -3,-0.0 0.513 59.6 129.0 68.3 6.2 -8.8 -6.3 2.3 8 29 A K - 0 0 122 1,-0.1 -5,-2.5 2,-0.0 -1,-0.2 -0.626 56.6-131.6 -86.8 149.9 -11.4 -4.4 0.1 9 30 A P S S+ 0 0 98 0, 0.0 -7,-0.2 0, 0.0 -1,-0.1 0.007 84.2 68.7 -72.1-168.4 -11.1 -3.4 -3.6 10 31 A G S S+ 0 0 58 1,-0.2 2,-0.3 -9,-0.2 -8,-0.2 0.815 79.9 139.0 61.6 29.6 -11.9 0.2 -4.7 11 32 A H + 0 0 18 -10,-2.5 2,-0.3 -3,-0.1 -1,-0.2 -0.797 23.6 158.7-116.2 151.4 -8.8 1.4 -2.8 12 33 A L >> - 0 0 99 -2,-0.3 4,-1.9 -3,-0.1 3,-1.3 -0.914 60.6 -77.9-153.9 171.0 -6.0 3.9 -3.5 13 34 A S T 34 S+ 0 0 65 -2,-0.3 -2,-0.0 1,-0.3 -10,-0.0 0.406 133.2 45.7 -58.0 -2.7 -3.3 6.0 -1.7 14 35 A S T 34 S+ 0 0 109 4,-0.0 -1,-0.3 0, 0.0 3,-0.1 0.469 105.0 57.0-120.1 -14.0 -6.2 8.4 -0.7 15 36 A Q T <4 S- 0 0 117 -3,-1.3 2,-0.2 1,-0.2 -2,-0.2 0.871 129.5 -4.4 -79.3 -40.1 -8.8 5.7 0.4 16 37 A C S < S- 0 0 12 -4,-1.9 -1,-0.2 -11,-0.0 -4,-0.0 -0.836 92.5 -82.2-140.2 174.5 -6.2 4.4 3.0 17 38 A R S S- 0 0 133 -2,-0.2 6,-0.1 1,-0.2 -4,-0.1 0.804 109.5 -19.1 -53.4 -34.0 -2.5 5.2 3.9 18 39 A A - 0 0 1 4,-0.2 -14,-1.3 -6,-0.1 -13,-0.2 -0.956 68.9-106.2-158.5 160.0 -1.5 2.9 1.0 19 40 A P B > -A 3 0A 14 0, 0.0 3,-2.5 0, 0.0 -16,-0.3 -0.372 61.6 -79.0 -71.7 171.6 -2.8 0.1 -1.3 20 41 A K T 3 S+ 0 0 115 -18,-2.8 -17,-0.1 1,-0.3 -16,-0.0 0.620 122.9 80.5 -53.9 -18.4 -1.5 -3.5 -0.6 21 42 A V T 3 S- 0 0 46 -19,-0.3 -1,-0.3 5,-0.1 2,-0.2 0.798 116.4 -18.0 -50.7 -33.8 1.8 -2.6 -2.5 22 43 A C < - 0 0 4 -3,-2.5 -4,-0.2 4,-0.1 -5,-0.0 -0.534 58.0-123.9-147.7-154.7 2.9 -0.9 0.8 23 44 A F S S- 0 0 109 -2,-0.2 -5,-0.1 -6,-0.1 -6,-0.1 0.381 91.3 -21.7-140.5 -23.0 1.5 0.5 4.2 24 45 A K S S+ 0 0 143 -5,-0.1 -2,-0.0 -7,-0.0 0, 0.0 0.394 127.2 55.2-155.7 -53.7 2.7 4.2 4.2 25 46 A C + 0 0 41 1,-0.1 5,-0.1 2,-0.0 -7,-0.0 0.805 65.1 176.2 -76.3 -31.4 5.8 5.1 2.1 26 47 A K + 0 0 85 1,-0.1 -1,-0.1 -7,-0.1 -4,-0.1 0.516 9.7 166.7 44.2 24.1 4.2 3.8 -1.3 27 48 A Q > - 0 0 119 1,-0.1 4,-0.5 2,-0.0 3,-0.4 -0.358 51.8 -96.7 -67.9 152.7 7.1 4.9 -3.7 28 49 A P T 4 S- 0 0 128 0, 0.0 -1,-0.1 0, 0.0 -2,-0.1 0.555 109.0 -3.0 -52.3 -22.0 7.1 3.4 -7.3 29 50 A G T >4 S+ 0 0 44 2,-0.0 3,-0.5 4,-0.0 4,-0.1 0.345 98.8 103.2-151.3 3.6 9.6 0.4 -6.6 30 51 A H G >4 + 0 0 30 -3,-0.4 3,-1.8 1,-0.2 5,-0.3 0.751 68.3 75.0 -63.2 -28.6 10.9 0.6 -3.0 31 52 A F G ><>S+ 0 0 53 -4,-0.5 5,-2.4 1,-0.3 3,-1.9 0.897 84.1 62.9 -60.8 -41.7 8.6 -2.2 -1.7 32 53 A S G < 5S+ 0 0 82 -3,-0.5 -1,-0.3 1,-0.3 -2,-0.1 0.514 116.5 32.8 -60.3 -7.1 10.7 -5.0 -3.4 33 54 A K G < 5S+ 0 0 173 -3,-1.8 -1,-0.3 -4,-0.1 -2,-0.2 0.169 138.5 11.2-134.2 13.3 13.7 -3.9 -1.1 34 55 A Q T < 5S+ 0 0 125 -3,-1.9 -3,-0.2 -4,-0.2 -2,-0.1 0.365 130.8 28.9-149.4 -54.9 11.8 -2.7 2.1 35 56 A C T 5S+ 0 0 29 -4,-0.3 -3,-0.2 -5,-0.3 -4,-0.2 0.403 134.9 22.6-103.8 -4.1 8.0 -3.6 2.4 36 57 A R < 0 0 125 -5,-2.4 -4,-0.1 -6,-0.2 -1,-0.1 0.075 360.0 360.0-152.1 19.3 7.9 -6.8 0.4 37 58 A S 0 0 141 -6,-0.3 -2,-0.1 -3,-0.0 -5,-0.1 0.834 360.0 360.0 -48.9 360.0 11.6 -8.1 0.5