==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 28-JUL-98 1BM4 . COMPND 2 MOLECULE: PROTEIN (MOLONEY MURINE LEUKEMIA VIRUS CAPSID); . SOURCE 2 SYNTHETIC: YES; . AUTHOR C.B.CLISH,D.H.PEYTON,E.BARKLIS . 32 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3414.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 24 75.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 18.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 13 40.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 1 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A C 0 0 122 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 116.9 -22.0 9.0 -5.1 2 2 A A + 0 0 94 1,-0.1 3,-0.0 3,-0.0 0, 0.0 0.985 360.0 40.6 -75.7 -59.9 -21.9 8.5 -1.2 3 3 A K S S+ 0 0 184 1,-0.2 2,-0.8 2,-0.0 -1,-0.1 0.632 104.4 69.5 -68.7 -18.0 -22.5 4.7 -0.6 4 4 A V + 0 0 108 1,-0.1 -1,-0.2 3,-0.0 3,-0.0 -0.709 59.0 107.3-105.0 79.7 -20.3 3.4 -3.5 5 5 A K > + 0 0 129 -2,-0.8 3,-1.2 -3,-0.0 2,-0.5 -0.424 47.1 168.2-138.5 62.2 -16.6 4.3 -2.4 6 6 A G T 3 S- 0 0 66 1,-0.5 -3,-0.0 6,-0.0 -2,-0.0 -0.789 75.4 -14.1-134.1 87.5 -15.6 0.7 -1.6 7 7 A I T 3 >S+ 0 0 100 -2,-0.5 5,-2.3 3,-0.1 2,-0.6 0.514 83.3 173.5 -98.4 131.3 -12.5 0.7 -1.2 8 8 A T T < 5 + 0 0 95 -3,-1.2 -3,-0.0 1,-0.2 -4,-0.0 -0.877 60.5 46.7 -98.0 121.2 -11.4 4.2 -2.6 9 9 A Q T 5S+ 0 0 167 -2,-0.6 -1,-0.2 0, 0.0 -2,-0.0 0.960 125.4 26.5 73.8 93.7 -7.6 4.9 -1.9 10 10 A G T > 5S- 0 0 6 -3,-0.2 3,-2.2 0, 0.0 2,-0.7 0.644 107.3-116.6 -65.5 152.4 -6.3 2.3 -2.8 11 11 A P G > 5S- 0 0 91 0, 0.0 3,-1.3 0, 0.0 -3,-0.2 -0.315 98.9 -27.7 -51.7 94.5 -8.9 0.9 -5.4 12 12 A N G 3 S+ 0 0 121 -3,-2.2 4,-2.0 -6,-0.2 5,-0.3 0.694 97.1 142.5 34.3 36.6 -6.2 -2.0 -1.9 14 14 A S H <> S+ 0 0 82 -3,-1.3 4,-0.5 2,-0.2 -2,-0.1 0.955 76.8 22.9 -73.3 -52.4 -4.9 -3.1 -5.5 15 15 A P H >> S+ 0 0 69 0, 0.0 4,-3.0 0, 0.0 3,-0.7 0.947 123.4 58.1 -65.3 -48.8 -1.7 -0.8 -5.6 16 16 A S H 3> S+ 0 0 34 1,-0.2 4,-2.5 2,-0.2 5,-0.2 0.855 102.2 49.1 -57.3 -48.6 -1.4 -0.3 -1.7 17 17 A A H 3X S+ 0 0 24 -4,-2.0 4,-1.1 2,-0.2 -1,-0.2 0.775 118.2 42.2 -65.2 -27.3 -1.1 -4.1 -0.6 18 18 A F H X S+ 0 0 35 -4,-1.1 4,-1.0 -5,-0.2 3,-0.7 0.977 113.7 46.2 -62.8 -55.9 11.4 -4.7 2.1 26 26 A Y H 3< S+ 0 0 110 -4,-2.8 3,-0.3 1,-0.2 -2,-0.2 0.828 110.9 53.2 -59.2 -35.2 12.9 -1.1 1.4 27 27 A R H >< S+ 0 0 106 -4,-2.2 3,-0.6 1,-0.2 -1,-0.2 0.765 101.3 60.8 -69.9 -24.1 12.8 -0.3 5.2 28 28 A R H << S+ 0 0 201 -4,-1.0 -2,-0.2 -3,-0.7 -1,-0.2 0.806 118.1 29.9 -63.4 -32.9 14.8 -3.6 5.8 29 29 A Y T 3< S+ 0 0 154 -4,-1.0 -1,-0.2 -3,-0.3 -2,-0.2 -0.117 124.4 45.2-120.5 39.2 17.7 -1.9 3.6 30 30 A T S < S- 0 0 70 -3,-0.6 2,-1.7 -5,-0.1 -1,-0.2 -0.600 70.0-145.7-169.6 113.4 17.1 1.9 4.3 31 31 A P 0 0 122 0, 0.0 -4,-0.1 0, 0.0 -3,-0.1 -0.398 360.0 360.0 -85.5 67.9 16.6 3.3 8.0 32 32 A Y 0 0 244 -2,-1.7 -5,-0.1 -5,-0.0 -2,-0.0 0.993 360.0 360.0 62.8 360.0 14.1 6.2 7.0