==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER RETINOIC-ACID TRANSPORT 28-JUL-98 1BM5 . COMPND 2 MOLECULE: CELLULAR RETINOIC ACID BINDING PROTEIN-TYPE II; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR H.WANG,H.YAN . 137 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 8467.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 92 67.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 61 44.5 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 3 2.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 4 2.9 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 2 1.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 5.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 6 4.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 14 10.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 1 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 1 0 1 2 1 2 3 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A P 0 0 82 0, 0.0 2,-0.3 0, 0.0 114,-0.1 0.000 360.0 360.0 360.0 43.5 17.3 5.4 -4.1 2 2 A N - 0 0 92 112,-0.2 112,-0.1 116,-0.2 89,-0.0 -0.853 360.0-179.7-162.8 123.0 15.7 5.9 -0.6 3 3 A F + 0 0 0 -2,-0.3 2,-0.5 110,-0.1 40,-0.4 0.503 52.5 116.6 -99.7 -8.2 12.1 5.5 0.6 4 4 A S + 0 0 66 40,-0.1 2,-0.3 38,-0.1 40,-0.2 -0.476 53.4 66.3 -66.6 116.4 12.9 6.5 4.2 5 5 A G E S-A 43 0A 25 38,-1.9 38,-1.8 -2,-0.5 2,-0.2 -0.971 88.4 -61.6 162.2-169.9 11.0 9.7 5.0 6 6 A N E -A 42 0A 69 -2,-0.3 2,-0.3 36,-0.2 36,-0.2 -0.506 45.7-150.4 -96.6 169.9 7.5 11.0 5.5 7 7 A W E -A 41 0A 1 34,-2.1 34,-1.3 129,-0.3 2,-0.6 -0.879 16.4-176.0-150.8 119.8 4.9 10.9 2.7 8 8 A K E -AB 40 135A 123 127,-2.4 127,-1.6 -2,-0.3 32,-0.2 -0.932 31.2-128.0-114.1 113.7 1.9 13.1 1.9 9 9 A I E + B 0 134A 22 30,-1.0 125,-0.2 -2,-0.6 3,-0.1 -0.151 27.1 177.6 -56.5 154.4 -0.1 11.8 -1.1 10 10 A I E + 0 0 90 123,-1.9 2,-0.3 1,-0.4 -1,-0.1 0.557 65.5 15.7-130.0 -31.5 -0.8 14.4 -3.9 11 11 A R E + B 0 133A 193 122,-0.7 122,-1.3 2,-0.0 -1,-0.4 -0.907 61.8 160.6-139.9 168.1 -2.7 12.3 -6.5 12 12 A S E - B 0 132A 44 -2,-0.3 2,-0.3 120,-0.2 120,-0.2 -0.898 10.2-171.7 177.7 152.4 -4.5 9.0 -6.7 13 13 A E E + B 0 131A 99 118,-1.9 118,-0.8 -2,-0.3 -2,-0.0 -0.935 63.5 45.8-148.5 171.0 -7.1 7.0 -8.7 14 14 A N S > S+ 0 0 53 -2,-0.3 4,-0.9 116,-0.2 -1,-0.1 0.862 70.6 136.4 61.3 32.1 -9.1 3.8 -8.5 15 15 A F H >> + 0 0 44 2,-0.2 4,-1.4 3,-0.1 3,-0.6 0.985 69.8 37.0 -75.2 -62.6 -10.0 4.6 -4.9 16 16 A E H 3> S+ 0 0 88 1,-0.3 4,-1.5 2,-0.2 3,-0.2 0.885 116.4 55.2 -59.2 -36.5 -13.7 3.7 -4.8 17 17 A E H 3> S+ 0 0 77 1,-0.2 4,-1.4 2,-0.2 -1,-0.3 0.847 106.8 50.7 -68.0 -28.6 -13.1 0.8 -7.1 18 18 A L H > S+ 0 0 85 2,-0.1 4,-1.5 3,-0.1 3,-1.1 0.686 103.0 44.7-121.0 -48.8 -21.9 0.8 -0.6 27 27 A M H 3> S+ 0 0 133 1,-0.2 4,-1.8 2,-0.2 5,-0.2 0.802 102.4 71.9 -69.0 -24.5 -21.4 3.0 2.5 28 28 A L H 3> S+ 0 0 99 1,-0.2 4,-0.5 2,-0.2 -1,-0.2 0.809 102.8 41.4 -60.8 -27.7 -18.5 0.7 3.4 29 29 A R H X> S+ 0 0 36 -3,-1.1 4,-1.9 2,-0.2 3,-0.6 0.896 110.2 53.8 -87.4 -45.2 -16.5 2.4 0.5 30 30 A K H 3X S+ 0 0 146 -4,-1.5 4,-1.8 1,-0.2 5,-0.2 0.800 106.0 56.1 -61.4 -25.1 -17.5 6.0 1.0 31 31 A I H 3X S+ 0 0 97 -4,-1.8 4,-1.6 2,-0.2 -1,-0.2 0.839 109.3 45.3 -76.5 -29.7 -16.4 5.7 4.7 32 32 A A H -D 49 0A 92 3,-0.4 2,-1.4 -2,-0.3 3,-0.7 -0.932 36.0-107.1-128.9 152.7 12.5 -7.7 3.7 67 67 A V T 3 S+ 0 0 23 -19,-1.9 19,-0.2 -2,-0.3 20,-0.1 -0.610 108.1 31.8 -82.2 92.6 12.9 -8.0 -0.1 68 68 A G T 3 S+ 0 0 62 -2,-1.4 2,-0.3 17,-0.7 -1,-0.2 0.122 107.7 62.2 151.7 -27.0 13.3 -11.8 -0.6 69 69 A E S < S- 0 0 117 -3,-0.7 -1,-0.5 16,-0.2 16,-0.5 -0.874 75.5-115.9-124.7 159.5 11.2 -13.5 2.2 70 70 A E + 0 0 106 -2,-0.3 2,-0.3 14,-0.2 14,-0.2 -0.409 36.0 171.5 -87.5 168.0 7.5 -13.6 3.0 71 71 A F E -E 83 0A 25 12,-1.9 12,-0.9 -2,-0.1 2,-0.4 -0.962 33.4 -94.6-161.4 178.4 6.0 -12.2 6.2 72 72 A E E +E 82 0A 130 -2,-0.3 -8,-0.3 10,-0.3 2,-0.3 -0.843 51.2 139.9-107.6 143.3 2.7 -11.3 7.9 73 73 A E E -E 81 0A 17 8,-1.8 8,-2.2 -2,-0.4 2,-0.3 -0.935 49.8 -81.2-162.0-176.2 1.2 -7.8 7.8 74 74 A Q E -E 80 0A 79 -12,-0.3 -13,-0.0 -2,-0.3 9,-0.0 -0.706 36.4-141.5 -99.6 153.1 -2.0 -5.9 7.5 75 75 A T - 0 0 15 4,-1.9 -1,-0.1 -2,-0.3 6,-0.1 0.203 34.6 -90.9 -90.2-145.0 -3.7 -5.2 4.1 76 76 A V S S+ 0 0 52 -15,-0.0 -15,-0.0 2,-0.0 -2,-0.0 0.640 119.0 46.0-108.0 -19.2 -5.6 -2.0 3.1 77 77 A D S S- 0 0 62 2,-0.1 -3,-0.0 -55,-0.0 -58,-0.0 0.886 124.0 -87.2 -89.6 -44.2 -9.1 -2.8 4.2 78 78 A G S S+ 0 0 44 1,-0.2 -4,-0.0 0, 0.0 -2,-0.0 0.503 84.0 119.2 139.9 39.7 -8.3 -4.2 7.7 79 79 A R - 0 0 127 2,-0.0 -4,-1.9 20,-0.0 -1,-0.2 -0.939 62.8-107.7-129.4 152.9 -7.5 -8.0 7.3 80 80 A P E +E 74 0A 65 0, 0.0 20,-1.6 0, 0.0 21,-0.4 -0.542 45.8 158.7 -78.4 139.7 -4.4 -10.1 8.1 81 81 A C E -EF 73 99A 0 -8,-2.2 -8,-1.8 18,-0.3 2,-0.7 -0.969 42.6-116.8-160.6 144.1 -2.4 -11.3 5.1 82 82 A K E -EF 72 98A 67 16,-1.8 16,-1.3 -2,-0.3 -10,-0.3 -0.731 37.5-166.4 -86.4 117.3 1.1 -12.6 4.4 83 83 A S E -EF 71 97A 0 -12,-0.9 -12,-1.9 -2,-0.7 2,-0.3 -0.596 6.2-164.9 -99.9 165.6 2.8 -10.2 1.9 84 84 A L E - F 0 96A 41 12,-1.8 12,-1.6 -14,-0.2 2,-0.4 -0.976 0.7-161.2-144.9 155.6 6.0 -10.7 -0.0 85 85 A V E + F 0 95A 0 -16,-0.5 -17,-0.7 -19,-0.4 2,-0.3 -0.943 9.0 177.7-148.4 129.0 8.3 -8.3 -2.0 86 86 A K E - F 0 94A 111 8,-1.0 8,-1.9 -2,-0.4 -18,-0.1 -0.851 34.2-106.8-121.7 158.5 11.0 -8.7 -4.6 87 87 A W E - F 0 93A 88 -2,-0.3 6,-0.3 6,-0.3 3,-0.1 -0.371 26.5-179.3 -81.4 166.5 13.0 -6.0 -6.4 88 88 A E - 0 0 118 4,-1.6 5,-0.2 1,-0.3 2,-0.2 0.546 69.6 -8.4-131.0 -42.2 12.4 -5.0 -10.0 89 89 A S S S- 0 0 63 3,-1.5 -1,-0.3 0, 0.0 0, 0.0 -0.493 97.2 -66.4-136.7-153.3 15.0 -2.3 -10.7 90 90 A E S S+ 0 0 173 1,-0.2 3,-0.1 -2,-0.2 -3,-0.0 0.730 133.3 7.8 -79.9 -18.9 17.4 -0.3 -8.5 91 91 A N S S+ 0 0 33 1,-0.1 22,-1.8 22,-0.1 2,-0.4 0.107 111.8 86.7-147.9 26.8 14.6 1.4 -6.6 92 92 A K E + G 0 112A 70 20,-0.2 -4,-1.6 18,-0.0 -3,-1.5 -0.908 48.0 174.2-134.4 109.3 11.3 -0.3 -7.8 93 93 A M E -FG 87 111A 0 18,-1.9 18,-2.1 -2,-0.4 -6,-0.3 -0.877 18.2-143.7-115.2 148.0 10.1 -3.4 -6.0 94 94 A V E -FG 86 110A 35 -8,-1.9 -8,-1.0 -2,-0.4 2,-0.3 -0.515 13.1-149.7-100.3 172.7 6.8 -5.3 -6.5 95 95 A C E -FG 85 109A 1 14,-1.4 14,-0.8 -10,-0.2 -10,-0.2 -0.988 6.7-157.9-148.0 140.1 4.7 -7.1 -3.9 96 96 A E E -FG 84 108A 85 -12,-1.6 -12,-1.8 -2,-0.3 2,-0.3 -0.677 16.0-169.2-107.6 164.5 2.4 -10.1 -3.7 97 97 A Q E +FG 83 107A 10 10,-0.8 10,-1.4 -2,-0.2 2,-0.3 -0.935 14.2 168.7-160.2 135.8 -0.3 -10.6 -1.0 98 98 A K E -F 82 0A 121 -16,-1.3 -16,-1.8 -2,-0.3 8,-0.1 -0.998 39.5-101.1-145.2 144.3 -2.7 -13.3 0.2 99 99 A L E -F 81 0A 35 -2,-0.3 -18,-0.3 6,-0.3 -17,-0.2 -0.078 19.2-135.0 -58.6 168.1 -4.8 -13.5 3.4 100 100 A L S S+ 0 0 70 -20,-1.6 2,-0.3 1,-0.2 -19,-0.2 0.450 89.5 28.4-102.8 -3.8 -3.7 -15.6 6.3 101 101 A K S S- 0 0 163 -21,-0.4 -1,-0.2 1,-0.0 -2,-0.1 -0.995 115.5 -4.3-153.9 148.2 -7.2 -17.1 6.7 102 102 A G S S- 0 0 65 -2,-0.3 2,-0.3 -3,-0.1 -3,-0.0 -0.167 74.1-125.4 61.2-162.7 -10.1 -17.9 4.4 103 103 A E + 0 0 183 -3,-0.1 3,-0.1 -5,-0.1 -1,-0.1 -0.853 49.9 123.2-178.9 141.7 -9.7 -16.8 0.8 104 104 A G + 0 0 60 1,-0.8 -2,-0.0 -2,-0.3 2,-0.0 -0.056 68.9 28.8-163.5 -84.5 -11.6 -14.8 -1.8 105 105 A P S S- 0 0 70 0, 0.0 -1,-0.8 0, 0.0 2,-0.4 -0.125 71.4-126.5 -83.2-176.2 -10.0 -11.8 -3.5 106 106 A K - 0 0 108 -3,-0.1 20,-1.2 -8,-0.1 2,-0.4 -0.999 16.8-158.4-137.2 136.8 -6.2 -11.3 -4.2 107 107 A T E +GH 97 125A 22 -10,-1.4 -10,-0.8 -2,-0.4 2,-0.3 -0.918 20.1 153.7-119.9 145.2 -4.0 -8.4 -3.2 108 108 A S E +GH 96 124A 15 16,-1.8 16,-1.3 -2,-0.4 2,-0.3 -0.931 10.6 172.0-162.7 136.6 -0.7 -7.3 -4.7 109 109 A W E -GH 95 123A 10 -14,-0.8 -14,-1.4 -2,-0.3 2,-0.3 -0.876 13.8-149.5-143.0 176.7 1.0 -3.8 -4.8 110 110 A T E -GH 94 122A 22 12,-2.0 12,-1.2 -2,-0.3 2,-0.3 -0.902 1.1-155.0-142.4 171.8 4.3 -2.1 -5.8 111 111 A M E -GH 93 121A 2 -18,-2.1 -18,-1.9 -2,-0.3 2,-0.3 -0.935 10.1-171.4-154.0 125.8 6.4 0.9 -4.8 112 112 A E E -GH 92 120A 73 8,-1.9 8,-1.7 -2,-0.3 2,-0.4 -0.881 13.0-142.8-120.5 154.1 9.0 2.8 -6.9 113 113 A L E - H 0 119A 6 -22,-1.8 6,-0.2 -2,-0.3 2,-0.2 -0.883 17.9-132.0-112.9 144.8 11.5 5.6 -6.0 114 114 A T > - 0 0 32 4,-1.8 3,-0.6 -2,-0.4 -112,-0.2 -0.562 25.5-111.0 -93.3 161.5 12.3 8.5 -8.3 115 115 A N T 3 S+ 0 0 157 1,-0.3 -1,-0.1 -2,-0.2 -2,-0.0 0.754 122.0 52.1 -62.1 -19.5 15.8 9.7 -9.1 116 116 A D T 3 S- 0 0 140 -115,-0.0 -1,-0.3 0, 0.0 -3,-0.0 0.773 125.7-101.3 -87.2 -26.5 15.0 12.8 -7.0 117 117 A G S < S+ 0 0 4 -3,-0.6 -2,-0.1 1,-0.2 19,-0.1 0.255 74.7 139.4 124.1 -9.7 13.8 10.8 -4.0 118 118 A E - 0 0 89 -5,-0.1 -4,-1.8 17,-0.1 2,-0.4 -0.003 42.9-139.8 -55.9 172.5 10.0 11.1 -4.5 119 119 A L E -HI 113 134A 4 15,-1.9 15,-1.3 -6,-0.2 2,-0.3 -0.882 18.7-177.2-144.8 113.2 8.0 7.9 -3.8 120 120 A I E -HI 112 133A 50 -8,-1.7 -8,-1.9 -2,-0.4 2,-0.4 -0.756 9.2-159.5-105.7 154.4 5.0 6.7 -5.8 121 121 A L E -HI 111 132A 25 11,-1.9 11,-2.5 -2,-0.3 2,-0.3 -0.985 4.0-165.7-137.9 131.3 3.0 3.6 -4.9 122 122 A T E -H 110 0A 41 -12,-1.2 -12,-2.0 -2,-0.4 2,-0.3 -0.716 9.2-162.2-109.0 162.3 0.8 1.4 -7.0 123 123 A M E -H 109 0A 19 -2,-0.3 2,-0.3 -14,-0.2 -14,-0.2 -0.971 6.3-165.7-142.4 159.1 -1.7 -1.1 -5.8 124 124 A T E -H 108 0A 48 -16,-1.3 -16,-1.8 -2,-0.3 5,-0.3 -0.989 7.3-179.1-143.9 152.6 -3.7 -4.1 -7.2 125 125 A A E > S-HJ 107 128A 1 3,-1.4 2,-2.1 -2,-0.3 3,-0.6 -0.631 71.1 -50.4-155.9 91.1 -6.7 -6.2 -6.0 126 126 A D T 3 S- 0 0 105 -20,-1.2 -19,-0.1 1,-0.2 3,-0.0 -0.498 130.0 -17.9 78.7 -76.5 -7.9 -9.1 -8.2 127 127 A D T 3 S+ 0 0 154 -2,-2.1 -1,-0.2 -21,-0.1 2,-0.2 0.105 123.0 84.7-148.2 22.7 -8.1 -7.1 -11.4 128 128 A V B < -J 125 0A 31 -3,-0.6 -3,-1.4 -110,-0.1 2,-0.3 -0.616 57.7-151.0-117.4 179.4 -8.1 -3.5 -10.1 129 129 A V - 0 0 52 -5,-0.3 2,-0.8 -2,-0.2 -5,-0.3 -0.831 4.4-158.2-158.9 117.3 -5.3 -1.2 -9.2 130 130 A C - 0 0 0 -2,-0.3 2,-0.3 -112,-0.1 -116,-0.2 -0.823 19.0-172.1 -99.1 107.7 -5.2 1.7 -6.7 131 131 A T E +B 13 0A 17 -2,-0.8 -118,-1.9 -118,-0.8 2,-0.3 -0.758 8.1 174.1 -99.7 146.0 -2.4 4.1 -7.6 132 132 A R E -BI 12 121A 24 -11,-2.5 -11,-1.9 -2,-0.3 2,-0.4 -0.928 23.5-139.6-151.0 122.7 -1.3 7.0 -5.3 133 133 A V E -BI 11 120A 41 -122,-1.3 -123,-1.9 -2,-0.3 -122,-0.7 -0.667 20.0-164.6 -84.5 135.5 1.6 9.4 -5.7 134 134 A Y E -BI 9 119A 10 -15,-1.3 -15,-1.9 -2,-0.4 2,-0.5 -0.962 6.0-166.4-124.4 124.4 3.5 10.2 -2.5 135 135 A V E -B 8 0A 43 -127,-1.6 -127,-2.4 -2,-0.5 -17,-0.1 -0.888 42.7 -91.4-107.5 134.5 5.9 13.1 -2.1 136 136 A R 0 0 94 -2,-0.5 -129,-0.3 -129,-0.2 -1,-0.1 -0.144 360.0 360.0 -44.5 125.9 8.1 13.2 1.0 137 137 A E 0 0 163 -131,-0.2 -1,-0.2 -96,-0.2 -130,-0.1 0.844 360.0 360.0 32.7 360.0 6.3 15.2 3.6