==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER VIRAL PROTEIN 27-JUL-98 1BMX . COMPND 2 MOLECULE: HUMAN IMMUNODEFICIENCY VIRUS TYPE 1 CAPSID; . SOURCE 2 ORGANISM_SCIENTIFIC: HUMAN IMMUNODEFICIENCY VIRUS 1; . AUTHOR C.B.CLISH,D.H.PEYTON,E.BARKLIS . 31 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3596.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 15 48.4 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 2 6.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 1 3.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 12 38.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A C 0 0 126 0, 0.0 4,-0.2 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 102.1 23.4 3.0 -9.4 2 2 A S + 0 0 97 2,-0.0 4,-0.4 0, 0.0 3,-0.2 0.089 360.0 11.7-148.8 -79.1 25.0 -0.5 -9.6 3 3 A I S S+ 0 0 163 1,-0.2 2,-1.7 2,-0.1 3,-0.3 0.899 130.6 58.6 -72.6 -41.9 25.3 -2.5 -6.2 4 4 A L S S+ 0 0 138 1,-0.2 -1,-0.2 3,-0.0 3,-0.1 -0.585 92.3 82.6 -78.0 74.6 22.9 0.3 -4.8 5 5 A D S S+ 0 0 93 -2,-1.7 2,-1.8 -4,-0.2 -1,-0.2 0.432 71.2 57.3-139.4 -65.6 20.2 -0.6 -7.5 6 6 A I + 0 0 140 -4,-0.4 -1,-0.0 -3,-0.3 -3,-0.0 -0.518 59.9 151.1 -87.9 79.8 17.9 -3.7 -6.6 7 7 A R - 0 0 210 -2,-1.8 -1,-0.2 -3,-0.1 -3,-0.0 0.789 40.0-144.8 -83.7 -32.8 16.5 -2.2 -3.4 8 8 A Q + 0 0 179 1,-0.1 -2,-0.1 0, 0.0 0, 0.0 0.992 49.9 121.5 63.5 87.1 13.0 -4.0 -3.3 9 9 A G - 0 0 42 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.281 44.9-150.9-171.0 83.4 10.2 -1.6 -1.8 10 10 A P + 0 0 93 0, 0.0 0, 0.0 0, 0.0 0, 0.0 -0.218 25.1 158.8 -69.3 148.5 7.1 -0.6 -3.9 11 11 A K > + 0 0 151 3,-0.1 4,-2.5 4,-0.0 5,-0.3 0.607 67.5 39.1-134.9 -71.9 5.3 2.8 -3.3 12 12 A E H > S+ 0 0 148 1,-0.2 4,-1.2 2,-0.2 5,-0.1 0.935 122.6 43.3 -63.5 -47.2 3.1 4.3 -6.1 13 13 A P H 4 S+ 0 0 102 0, 0.0 -1,-0.2 0, 0.0 0, 0.0 0.846 121.5 43.5 -48.0 -40.3 1.6 0.7 -7.1 14 14 A F H > S+ 0 0 98 2,-0.2 4,-2.0 3,-0.2 -2,-0.2 0.712 115.8 41.2 -93.4 -27.7 1.1 -0.1 -3.4 15 15 A R H X S+ 0 0 130 -4,-2.5 4,-0.6 2,-0.2 -3,-0.2 0.517 115.1 51.1-103.4 -6.2 -0.3 3.2 -1.8 16 16 A D H < S+ 0 0 84 -4,-1.2 4,-0.3 -5,-0.3 -2,-0.2 0.443 113.9 48.7 -85.9 -7.6 -2.7 3.7 -4.8 17 17 A Y H > S+ 0 0 99 -5,-0.1 4,-2.6 3,-0.1 -2,-0.2 0.882 111.1 49.5 -79.9 -56.9 -3.6 0.0 -4.0 18 18 A V H X S+ 0 0 46 -4,-2.0 4,-2.6 2,-0.2 -3,-0.1 0.773 108.2 50.4 -46.9 -42.1 -4.0 0.8 -0.1 19 19 A D H X S+ 0 0 124 -4,-0.6 4,-2.0 2,-0.2 -1,-0.2 0.932 115.6 42.4 -74.4 -44.0 -6.3 3.9 -0.5 20 20 A R H > S+ 0 0 169 -4,-0.3 4,-1.5 2,-0.2 -2,-0.2 0.834 114.4 52.1 -55.2 -46.8 -8.7 2.0 -2.8 21 21 A F H X S+ 0 0 107 -4,-2.6 4,-2.7 2,-0.2 -2,-0.2 0.877 109.5 51.3 -57.4 -41.6 -8.3 -1.1 -0.5 22 22 A Y H X S+ 0 0 131 -4,-2.6 4,-2.1 2,-0.2 -2,-0.2 0.851 113.3 42.0 -72.5 -36.2 -9.3 1.2 2.5 23 23 A K H < S+ 0 0 118 -4,-2.0 -1,-0.2 2,-0.2 -2,-0.2 0.689 112.2 56.3 -78.6 -19.8 -12.5 2.6 0.7 24 24 A T H >X S+ 0 0 83 -4,-1.5 4,-1.7 2,-0.2 3,-1.3 0.951 113.3 39.8 -64.7 -50.2 -13.2 -1.1 -0.5 25 25 A L H 3X S+ 0 0 71 -4,-2.7 4,-3.0 1,-0.3 5,-0.3 0.885 110.4 60.6 -63.3 -36.3 -13.1 -2.0 3.3 26 26 A R H 3< S+ 0 0 107 -4,-2.1 -1,-0.3 1,-0.2 -2,-0.2 0.040 107.4 45.5 -83.6 31.5 -15.0 1.3 4.0 27 27 A A H <4 S+ 0 0 50 -3,-1.3 4,-0.5 -5,-0.1 -2,-0.2 0.342 108.6 53.6-119.4 -23.9 -17.6 -0.3 1.8 28 28 A E H < S+ 0 0 154 -4,-1.7 -2,-0.2 2,-0.2 -3,-0.2 0.914 122.1 33.6 -59.6 -43.7 -17.4 -3.7 3.7 29 29 A Q S < S- 0 0 126 -4,-3.0 2,-0.2 1,-0.2 -3,-0.2 0.931 147.5 -24.2 -72.2 -53.0 -18.0 -1.6 6.9 30 30 A A 0 0 72 -5,-0.3 -1,-0.2 1,-0.1 -2,-0.2 -0.741 360.0 360.0-168.6 115.4 -20.4 1.1 5.3 31 31 A S 0 0 145 -4,-0.5 -1,-0.1 -2,-0.2 -3,-0.1 0.990 360.0 360.0 -71.8 360.0 -20.6 2.1 1.5