==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER NUCLEOTIDYLTRANSFERASE (DNA-BINDING) 25-APR-96 1BNO . COMPND 2 MOLECULE: DNA POLYMERASE BETA; . SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; . AUTHOR D.-J.LIU,R.PRASAD,S.H.WILSON,E.F.DEROSE,G.P.MULLEN . 87 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7717.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 41 47.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 1 1.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 11 12.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 29 33.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 1 0 0 1 0 1 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 207 0, 0.0 0, 0.0 0, 0.0 0, 0.0 0.000 360.0 360.0 360.0 125.0 87.2 -5.8 -7.5 2 2 A S + 0 0 103 1,-0.0 0, 0.0 0, 0.0 0, 0.0 0.968 360.0 175.2 60.0 85.8 89.4 -5.1 -4.5 3 3 A K - 0 0 189 0, 0.0 -1,-0.0 0, 0.0 0, 0.0 0.944 66.5 -47.0 -86.6 -61.9 90.3 -1.4 -4.8 4 4 A R S S- 0 0 224 0, 0.0 2,-0.1 0, 0.0 0, 0.0 0.469 107.1 -33.8-139.0 -60.4 92.4 -0.7 -1.7 5 5 A K - 0 0 169 2,-0.0 0, 0.0 0, 0.0 0, 0.0 -0.436 57.4-172.0-174.1 91.1 90.8 -2.0 1.5 6 6 A A - 0 0 75 1,-0.1 0, 0.0 -2,-0.1 0, 0.0 -0.584 35.0 -97.8 -89.1 155.0 87.0 -2.2 2.1 7 7 A P - 0 0 83 0, 0.0 -1,-0.1 0, 0.0 4,-0.1 -0.007 26.6-122.4 -60.8 173.0 85.4 -3.1 5.4 8 8 A Q S S+ 0 0 153 2,-0.2 3,-0.1 1,-0.1 -2,-0.0 0.836 107.6 17.0 -89.3 -36.2 84.2 -6.7 6.1 9 9 A E S S- 0 0 168 1,-0.4 -1,-0.1 2,-0.0 -3,-0.0 -0.165 109.6-113.2-127.7 40.4 80.5 -5.8 6.8 10 10 A T - 0 0 87 -3,-0.1 -1,-0.4 1,-0.0 -2,-0.2 0.118 36.0 -88.1 52.0-177.9 80.3 -2.2 5.4 11 11 A L S S- 0 0 152 -4,-0.1 -1,-0.0 -3,-0.1 -3,-0.0 0.919 72.1 -70.5 -90.2 -71.1 79.8 0.7 7.9 12 12 A N S S+ 0 0 76 40,-0.0 40,-0.1 0, 0.0 41,-0.0 0.235 112.0 47.0-150.6 -74.2 76.0 1.1 8.3 13 13 A G + 0 0 9 37,-0.1 38,-0.1 1,-0.1 40,-0.1 0.916 46.1 158.2 -46.8 -99.5 73.9 2.5 5.4 14 14 A G > + 0 0 25 3,-0.1 4,-1.3 33,-0.0 5,-0.1 0.900 27.7 141.6 70.5 35.8 74.9 0.6 2.2 15 15 A I H > + 0 0 0 2,-0.2 4,-1.9 1,-0.2 3,-0.3 0.979 66.6 43.1 -74.1 -62.0 71.5 1.7 0.9 16 16 A T H > S+ 0 0 23 1,-0.2 4,-1.6 30,-0.2 -1,-0.2 0.713 110.1 63.1 -59.7 -18.2 72.3 2.5 -2.7 17 17 A D H > S+ 0 0 108 2,-0.2 4,-0.9 1,-0.2 -1,-0.2 0.957 110.1 33.8 -73.8 -50.4 74.5 -0.7 -2.7 18 18 A M H X S+ 0 0 93 -4,-1.3 4,-1.2 -3,-0.3 -2,-0.2 0.729 118.1 55.6 -78.4 -18.8 71.6 -3.2 -2.1 19 19 A L H X S+ 0 0 2 -4,-1.9 4,-1.2 2,-0.2 -2,-0.2 0.930 110.4 43.7 -77.4 -43.8 69.2 -1.1 -4.1 20 20 A V H X S+ 0 0 70 -4,-1.6 4,-1.3 -5,-0.3 -2,-0.2 0.747 105.3 67.1 -70.7 -21.1 71.5 -1.1 -7.1 21 21 A E H X S+ 0 0 117 -4,-0.9 4,-0.5 2,-0.2 3,-0.3 0.946 99.4 48.2 -66.2 -45.1 71.9 -4.9 -6.5 22 22 A L H >< S+ 0 0 17 -4,-1.2 3,-1.1 1,-0.3 4,-0.3 0.903 110.9 51.9 -62.4 -36.2 68.3 -5.6 -7.3 23 23 A A H >< S+ 0 0 19 -4,-1.2 3,-0.5 1,-0.2 -1,-0.3 0.805 106.7 54.2 -69.6 -25.6 68.8 -3.5 -10.5 24 24 A N H 3< S+ 0 0 116 -4,-1.3 -1,-0.2 -3,-0.3 -2,-0.2 0.529 74.8 107.1 -84.9 -4.8 71.9 -5.7 -11.3 25 25 A F T << - 0 0 115 -3,-1.1 5,-0.2 -4,-0.5 -1,-0.2 0.868 54.9-172.0 -40.4 -44.0 69.8 -8.9 -11.0 26 26 A E S < S+ 0 0 143 3,-1.0 4,-0.2 -3,-0.5 -1,-0.2 0.770 73.1 47.4 54.3 23.1 70.0 -9.2 -14.8 27 27 A K S > S+ 0 0 187 3,-0.0 3,-0.6 0, 0.0 -1,-0.2 0.183 119.8 20.5-150.1 -78.1 67.5 -12.1 -14.5 28 28 A N T 3 S+ 0 0 133 1,-0.3 2,-0.1 -3,-0.1 8,-0.1 0.808 146.4 19.4 -73.6 -27.1 64.4 -11.6 -12.4 29 29 A V T 3 S+ 0 0 10 -7,-0.1 -3,-1.0 4,-0.1 -1,-0.3 -0.564 85.4 131.3-141.1 71.9 64.8 -7.8 -12.7 30 30 A S < - 0 0 33 -3,-0.6 2,-0.3 -5,-0.2 -4,-0.1 0.867 69.8 -32.7 -90.1 -86.6 67.1 -7.1 -15.7 31 31 A Q S S+ 0 0 142 -4,-0.1 -1,-0.2 1,-0.1 3,-0.1 -0.999 119.0 21.7-143.2 142.7 65.7 -4.4 -18.0 32 32 A A S S+ 0 0 101 -2,-0.3 2,-0.2 1,-0.2 -1,-0.1 0.800 84.7 146.5 75.2 28.7 62.1 -3.3 -19.1 33 33 A I - 0 0 46 -3,-0.1 4,-0.4 1,-0.1 -1,-0.2 -0.502 56.8-125.5 -92.0 165.5 60.7 -4.9 -16.0 34 34 A H S S+ 0 0 156 -2,-0.2 3,-0.3 1,-0.2 4,-0.2 0.921 111.4 27.9 -78.1 -44.1 57.6 -3.5 -14.1 35 35 A K S >> S+ 0 0 81 1,-0.2 4,-0.9 2,-0.1 3,-0.7 0.585 101.7 84.3 -92.4 -10.3 59.3 -3.3 -10.7 36 36 A Y H 3> S+ 0 0 35 1,-0.2 4,-0.8 2,-0.2 -1,-0.2 0.810 87.8 56.0 -62.9 -25.0 62.8 -2.8 -12.1 37 37 A N H 3> S+ 0 0 104 -4,-0.4 4,-2.0 -3,-0.3 5,-0.3 0.814 95.1 66.9 -76.1 -28.0 62.0 0.9 -12.4 38 38 A A H <> S+ 0 0 34 -3,-0.7 4,-1.8 -4,-0.2 -1,-0.2 0.885 104.8 42.3 -59.3 -38.9 61.1 1.1 -8.7 39 39 A Y H X S+ 0 0 16 -4,-0.9 4,-1.3 2,-0.2 -1,-0.2 0.731 108.8 60.3 -81.7 -21.7 64.8 0.4 -7.8 40 40 A R H X S+ 0 0 168 -4,-0.8 4,-0.6 2,-0.2 -2,-0.2 0.908 114.4 33.6 -73.0 -40.2 66.1 2.8 -10.5 41 41 A K H X S+ 0 0 150 -4,-2.0 4,-1.7 2,-0.2 5,-0.3 0.918 119.5 49.7 -81.4 -45.5 64.3 5.8 -8.9 42 42 A A H X S+ 0 0 0 -4,-1.8 4,-1.5 -5,-0.3 -3,-0.2 0.866 114.7 46.7 -62.1 -33.1 64.6 4.8 -5.3 43 43 A A H X S+ 0 0 10 -4,-1.3 4,-1.7 2,-0.2 5,-0.3 0.733 105.8 59.7 -81.3 -21.2 68.4 4.2 -5.9 44 44 A S H X S+ 0 0 84 -4,-0.6 4,-0.6 -3,-0.3 -2,-0.2 0.865 115.1 34.2 -74.4 -33.8 68.7 7.5 -7.7 45 45 A V H X S+ 0 0 28 -4,-1.7 4,-1.3 2,-0.1 -2,-0.2 0.762 119.9 51.0 -90.3 -27.6 67.5 9.5 -4.6 46 46 A I H < S+ 0 0 0 -4,-1.5 5,-0.3 -5,-0.3 -30,-0.2 0.968 109.1 47.5 -74.5 -55.2 69.2 7.1 -2.1 47 47 A A H < S+ 0 0 38 -4,-1.7 -1,-0.1 1,-0.3 -3,-0.1 0.899 114.5 48.3 -55.7 -37.0 72.7 7.0 -3.6 48 48 A K H < S+ 0 0 194 -4,-0.6 -1,-0.3 -5,-0.3 -2,-0.2 0.911 100.7 84.7 -68.9 -36.5 72.6 10.8 -3.8 49 49 A Y S < S- 0 0 41 -4,-1.3 -33,-0.1 1,-0.1 3,-0.1 -0.223 102.1-108.2 -58.5 154.3 71.4 10.7 -0.2 50 50 A P - 0 0 107 0, 0.0 -1,-0.1 0, 0.0 -37,-0.1 0.610 57.9-134.6 -63.1 -8.6 74.2 10.5 2.4 51 51 A H + 0 0 67 -5,-0.3 -38,-0.1 -38,-0.1 -4,-0.0 -0.002 66.9 82.6 75.8 170.5 73.0 6.9 3.0 52 52 A K - 0 0 85 1,-0.1 2,-0.3 -40,-0.1 -39,-0.1 0.729 47.6-179.3 62.8 122.0 72.5 5.2 6.4 53 53 A I - 0 0 0 20,-0.1 -1,-0.1 1,-0.1 24,-0.1 -0.764 18.2-173.4-156.0 104.3 69.1 5.9 8.0 54 54 A K S S+ 0 0 127 -2,-0.3 2,-0.1 2,-0.0 -1,-0.1 0.989 77.4 59.6 -63.2 -58.8 68.1 4.5 11.5 55 55 A S S > S- 0 0 78 1,-0.1 3,-1.0 2,-0.0 4,-0.4 -0.467 79.0-140.8 -71.6 141.0 64.5 5.8 11.4 56 56 A G T >> S+ 0 0 36 1,-0.2 3,-0.7 2,-0.2 4,-0.7 0.766 94.8 78.5 -73.5 -23.0 62.4 4.4 8.4 57 57 A A H 3> S+ 0 0 69 1,-0.2 4,-1.4 2,-0.2 3,-0.4 0.757 79.0 74.4 -57.8 -20.6 60.8 7.9 8.0 58 58 A E H X> S+ 0 0 57 -3,-1.0 4,-1.3 1,-0.2 3,-0.6 0.970 92.5 49.6 -58.6 -52.9 64.0 8.9 6.2 59 59 A A H <4 S+ 0 0 1 -3,-0.7 -1,-0.2 -4,-0.4 6,-0.2 0.777 103.7 65.1 -58.4 -22.4 63.2 7.0 3.1 60 60 A K H 3< S+ 0 0 162 -4,-0.7 -1,-0.2 -3,-0.4 -2,-0.2 0.945 100.5 46.5 -67.5 -46.4 59.7 8.7 3.2 61 61 A K H << S+ 0 0 133 -4,-1.4 -1,-0.2 -3,-0.6 -2,-0.2 0.809 91.4 96.5 -66.9 -25.8 61.2 12.2 2.7 62 62 A L S >< S- 0 0 3 -4,-1.3 3,-1.7 1,-0.1 -16,-0.1 -0.528 84.6-125.3 -66.6 114.0 63.3 10.8 -0.2 63 63 A P T 3 S+ 0 0 102 0, 0.0 -18,-0.1 0, 0.0 3,-0.1 -0.328 93.3 25.1 -61.3 138.8 61.1 11.6 -3.3 64 64 A G T 3 S+ 0 0 60 1,-0.1 2,-0.4 -4,-0.1 -22,-0.2 0.183 112.1 80.1 93.3 -19.6 60.4 8.5 -5.5 65 65 A V < + 0 0 8 -3,-1.7 -1,-0.1 -6,-0.2 -26,-0.0 -0.964 53.3 81.3-123.4 138.2 60.8 6.1 -2.4 66 66 A G S S+ 0 0 30 -2,-0.4 -1,-0.1 -3,-0.1 -2,-0.1 0.534 74.6 67.8 135.8 52.4 58.1 5.4 0.3 67 67 A T S S- 0 0 136 -3,-0.1 -2,-0.1 0, 0.0 -7,-0.0 0.331 117.7 -18.8-156.5 -45.7 55.6 2.9 -0.9 68 68 A K S >> S+ 0 0 136 -30,-0.1 3,-0.8 3,-0.0 4,-0.6 0.488 133.2 49.8-141.0 -47.5 57.1 -0.6 -1.3 69 69 A I H 3> S+ 0 0 19 1,-0.2 4,-1.5 2,-0.2 3,-0.4 0.733 93.5 79.1 -73.1 -19.5 60.9 -0.4 -1.6 70 70 A A H 3> S+ 0 0 26 1,-0.3 4,-1.5 2,-0.2 -1,-0.2 0.869 90.4 54.3 -57.3 -32.8 61.0 1.9 1.6 71 71 A E H <> S+ 0 0 161 -3,-0.8 4,-1.5 1,-0.2 -1,-0.3 0.886 103.6 54.9 -69.0 -35.7 60.6 -1.3 3.6 72 72 A K H X S+ 0 0 84 -4,-0.6 4,-1.3 -3,-0.4 -1,-0.2 0.830 102.0 59.2 -67.2 -28.6 63.7 -2.8 1.9 73 73 A I H >X S+ 0 0 0 -4,-1.5 4,-1.4 1,-0.2 3,-0.8 0.976 108.2 42.6 -64.8 -51.3 65.7 0.3 2.9 74 74 A D H 3< S+ 0 0 55 -4,-1.5 -1,-0.2 1,-0.2 -2,-0.2 0.813 104.0 69.5 -64.5 -25.7 65.0 -0.4 6.7 75 75 A E H >X S+ 0 0 117 -4,-1.5 3,-1.0 1,-0.2 4,-0.6 0.909 98.5 49.7 -59.9 -38.0 65.7 -4.1 5.9 76 76 A F H << S+ 0 0 36 -4,-1.3 3,-0.5 -3,-0.8 -1,-0.2 0.968 121.8 32.2 -64.2 -52.1 69.4 -3.2 5.3 77 77 A L T 3< S+ 0 0 18 -4,-1.4 3,-0.3 1,-0.2 -1,-0.3 0.059 98.0 92.6 -93.4 26.7 69.6 -1.3 8.6 78 78 A A T <4 S+ 0 0 52 -3,-1.0 3,-0.4 1,-0.2 -1,-0.2 0.842 91.5 37.7 -87.5 -35.6 67.0 -3.6 10.3 79 79 A T S < S+ 0 0 129 -4,-0.6 -1,-0.2 -3,-0.5 -2,-0.1 -0.022 102.8 77.1-103.6 31.0 69.7 -6.0 11.8 80 80 A G + 0 0 41 -3,-0.3 -1,-0.2 1,-0.1 -2,-0.1 -0.033 54.6 107.7-127.4 31.1 72.2 -3.2 12.6 81 81 A K + 0 0 147 -3,-0.4 -1,-0.1 -27,-0.0 -2,-0.0 -0.065 46.0 144.3 -98.9 34.7 70.6 -1.7 15.7 82 82 A L - 0 0 143 1,-0.1 -2,-0.0 -3,-0.1 -3,-0.0 -0.183 53.8-100.9 -66.7 166.5 73.3 -3.2 18.0 83 83 A R - 0 0 200 1,-0.1 -1,-0.1 3,-0.0 0, 0.0 -0.174 17.2-133.3 -79.9-179.6 74.4 -1.2 21.1 84 84 A K - 0 0 185 -2,-0.0 -1,-0.1 0, 0.0 -2,-0.0 -0.035 53.8 -91.4-126.1 31.1 77.7 0.9 21.2 85 85 A L - 0 0 154 1,-0.1 2,-0.4 2,-0.1 0, 0.0 0.881 42.5-132.6 59.7 102.8 79.1 -0.3 24.6 86 86 A E 0 0 158 1,-0.2 -1,-0.1 0, 0.0 -3,-0.0 -0.725 360.0 360.0 -89.0 131.7 77.8 2.1 27.3 87 87 A K 0 0 261 -2,-0.4 -1,-0.2 0, 0.0 -2,-0.1 0.597 360.0 360.0 60.1 360.0 80.5 3.3 29.8