==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=24-JUL-2011 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA BINDING PROTEIN/DNA 31-JUL-98 1BNZ . COMPND 2 MOLECULE: 5'-D(*GP*TP*AP*AP*TP*TP*AP*C)-3'; . SOURCE 2 SYNTHETIC: YES; . AUTHOR Y.-G.GAO,S.-Y.SU,H.ROBINSON,S.PADMANABHAN,L.LIM,B.S.MCCRARY, . 64 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 4580.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 44 68.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 23 35.9 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 1 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 2 3.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 4 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 9 14.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 8 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 2 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 1 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A M 0 0 144 0, 0.0 53,-0.3 0, 0.0 54,-0.2 0.000 360.0 360.0 360.0 -69.1 -0.0 23.9 2.0 2 2 A A - 0 0 61 52,-0.1 15,-2.4 14,-0.0 16,-0.4 -0.443 360.0 -57.3 75.0-144.3 -3.5 22.3 2.1 3 3 A T E -A 16 0A 58 13,-0.3 2,-0.4 -2,-0.1 13,-0.2 -0.875 31.2-137.4-138.3 164.1 -5.3 21.5 5.4 4 4 A V E -A 15 0A 1 11,-2.4 11,-2.4 -2,-0.3 2,-0.5 -0.996 12.2-155.2-127.0 126.9 -4.9 19.6 8.7 5 5 A K E +A 14 0A 99 -2,-0.4 2,-0.3 45,-0.3 9,-0.2 -0.880 29.3 151.0-101.8 130.1 -7.7 17.6 10.3 6 6 A F E -A 13 0A 5 7,-2.9 7,-3.6 -2,-0.5 2,-0.4 -0.909 40.5-115.4-149.6 174.6 -7.5 17.0 14.1 7 7 A K E +A 12 0A 139 38,-0.5 2,-0.3 -2,-0.3 38,-0.3 -0.973 28.7 172.6-120.7 132.4 -9.4 16.4 17.3 8 8 A Y E > -A 11 0A 75 3,-3.2 3,-1.3 -2,-0.4 -2,-0.0 -0.930 67.2 -20.8-145.9 117.6 -9.4 18.9 20.2 9 9 A K T 3 S- 0 0 177 -2,-0.3 3,-0.1 1,-0.3 -1,-0.0 0.909 126.6 -44.7 50.3 58.8 -11.6 18.6 23.3 10 10 A G T 3 S+ 0 0 76 1,-0.2 2,-0.4 0, 0.0 -1,-0.3 0.449 120.1 107.9 72.2 0.9 -14.3 16.4 21.9 11 11 A E E < -A 8 0A 108 -3,-1.3 -3,-3.2 2,-0.0 2,-0.5 -0.913 64.4-139.6-116.9 134.5 -14.4 18.4 18.7 12 12 A E E -A 7 0A 103 -2,-0.4 2,-0.3 -5,-0.2 -5,-0.3 -0.806 31.2-172.4 -90.2 123.5 -13.1 17.4 15.3 13 13 A K E -A 6 0A 57 -7,-3.6 -7,-2.9 -2,-0.5 2,-0.4 -0.822 20.5-159.4-119.5 162.1 -11.4 20.4 13.6 14 14 A E E -A 5 0A 126 -2,-0.3 2,-0.4 -9,-0.2 -9,-0.2 -0.998 17.0-175.8-137.5 131.5 -9.9 21.3 10.2 15 15 A V E -A 4 0A 16 -11,-2.4 -11,-2.4 -2,-0.4 2,-0.2 -0.998 28.6-112.3-139.2 140.9 -7.3 24.1 9.7 16 16 A D E > -A 3 0A 95 -2,-0.4 3,-1.7 -13,-0.2 4,-0.3 -0.461 21.5-137.1 -65.9 131.9 -5.5 25.7 6.8 17 17 A I G > S+ 0 0 2 -15,-2.4 3,-1.5 1,-0.3 -1,-0.1 0.809 102.6 66.4 -60.4 -30.3 -1.8 25.0 6.8 18 18 A S G 3 S+ 0 0 79 -16,-0.4 -1,-0.3 1,-0.3 -15,-0.1 0.739 97.8 55.0 -64.0 -20.8 -1.2 28.7 5.9 19 19 A K G < S+ 0 0 83 -3,-1.7 16,-2.3 16,-0.1 2,-0.4 0.449 81.7 112.3 -91.1 -3.3 -2.6 29.7 9.3 20 20 A I E < +B 34 0B 13 -3,-1.5 14,-0.3 -4,-0.3 3,-0.1 -0.593 39.2 176.9 -77.4 129.1 -0.2 27.5 11.3 21 21 A K E + 0 0 100 12,-2.5 2,-0.4 -2,-0.4 13,-0.2 0.916 60.1 17.6 -96.0 -62.2 2.4 29.4 13.4 22 22 A K E -B 33 0B 80 11,-0.6 11,-2.1 2,-0.0 2,-0.4 -0.930 61.7-170.8-118.3 143.3 4.7 27.1 15.4 23 23 A V E +B 32 0B 0 -2,-0.4 41,-0.7 9,-0.2 40,-0.4 -0.996 12.6 161.6-133.8 137.4 5.2 23.4 14.8 24 24 A W E -B 31 0B 82 7,-2.5 7,-2.3 -2,-0.4 2,-0.4 -0.994 33.3-120.0-154.3 160.1 7.1 20.9 17.0 25 25 A R E -B 30 0B 111 -2,-0.3 2,-0.4 5,-0.2 5,-0.2 -0.847 20.7-178.2-104.7 132.2 7.5 17.2 17.7 26 26 A V E > -B 29 0B 61 3,-2.6 3,-2.0 -2,-0.4 2,-0.6 -0.914 67.9 -53.8-131.6 100.5 6.7 15.7 21.1 27 27 A G T 3 S- 0 0 67 -2,-0.4 -2,-0.0 1,-0.3 0, 0.0 -0.534 120.6 -23.2 71.6-111.0 7.5 12.1 21.2 28 28 A K T 3 S+ 0 0 185 -2,-0.6 20,-1.3 -3,-0.1 2,-0.3 0.055 122.1 87.3-118.1 15.5 5.6 10.6 18.3 29 29 A M E < -BC 26 47B 87 -3,-2.0 -3,-2.6 18,-0.2 2,-0.6 -0.854 68.6-137.2-116.2 152.5 3.0 13.4 18.0 30 30 A I E -BC 25 46B 1 16,-2.8 16,-2.2 -2,-0.3 2,-0.3 -0.971 24.2-169.8-110.7 112.1 3.2 16.7 16.1 31 31 A S E +BC 24 45B 15 -7,-2.3 -7,-2.5 -2,-0.6 2,-0.3 -0.781 9.9 171.4-101.4 149.7 1.9 19.6 18.1 32 32 A F E -BC 23 44B 1 12,-3.1 12,-1.8 -2,-0.3 2,-0.4 -0.963 29.2-131.2-153.3 162.9 1.3 23.1 16.6 33 33 A T E -BC 22 43B 27 -11,-2.1 -12,-2.5 -2,-0.3 -11,-0.6 -0.909 29.6-175.8-114.8 147.5 -0.2 26.5 17.2 34 34 A Y E -BC 20 42B 14 8,-1.8 8,-2.9 -2,-0.4 2,-0.6 -0.936 30.7-103.9-140.8 164.8 -2.4 28.2 14.6 35 35 A D E - C 0 41B 46 -16,-2.3 6,-0.2 -2,-0.3 3,-0.1 -0.795 28.0-179.1 -89.7 119.3 -4.3 31.4 14.0 36 36 A E - 0 0 78 4,-2.3 5,-0.1 -2,-0.6 4,-0.1 0.082 53.1 -88.5-108.1 29.0 -8.0 31.2 14.6 37 37 A G S > S+ 0 0 23 1,-0.3 3,-0.9 3,-0.2 -1,-0.4 -0.085 97.9 42.5 88.6 165.3 -8.9 34.7 13.7 38 38 A G T 3 S- 0 0 77 1,-0.2 -1,-0.3 -3,-0.1 0, 0.0 -0.329 126.5 -51.0 57.4-139.3 -9.0 37.9 15.7 39 39 A G T 3 S+ 0 0 76 -3,-0.1 -1,-0.2 2,-0.1 2,-0.1 0.524 104.5 125.0-105.4 -1.8 -5.9 37.9 17.9 40 40 A K < - 0 0 121 -3,-0.9 -4,-2.3 -4,-0.1 2,-0.4 -0.264 47.0-152.1 -67.3 134.6 -6.5 34.4 19.2 41 41 A T E -C 35 0B 70 -6,-0.2 -6,-0.2 -5,-0.1 2,-0.2 -0.870 12.3-160.7-108.0 132.7 -4.1 31.5 19.0 42 42 A G E -C 34 0B 4 -8,-2.9 -8,-1.8 -2,-0.4 2,-0.3 -0.598 4.8-141.7-105.0 170.7 -5.3 27.9 18.8 43 43 A R E +C 33 0B 157 -10,-0.2 2,-0.3 -2,-0.2 -10,-0.2 -0.938 24.4 153.9-134.5 153.6 -3.6 24.6 19.6 44 44 A G E -C 32 0B 5 -12,-1.8 -12,-3.1 -2,-0.3 2,-0.3 -0.982 18.1-159.9-169.5 167.4 -3.6 21.2 18.0 45 45 A A E -C 31 0B 32 -38,-0.3 -38,-0.5 -2,-0.3 2,-0.3 -0.986 4.9-170.9-157.0 149.7 -1.8 17.9 17.4 46 46 A V E -C 30 0B 14 -16,-2.2 -16,-2.8 -2,-0.3 2,-0.2 -0.917 36.3 -92.8-138.0 165.1 -1.9 15.0 15.1 47 47 A S E > -C 29 0B 54 -2,-0.3 3,-1.3 -18,-0.2 4,-0.4 -0.520 42.1-113.2 -74.4 147.5 -0.2 11.6 14.8 48 48 A E G > S+ 0 0 72 -20,-1.3 3,-1.8 1,-0.3 -1,-0.1 0.906 116.9 55.4 -49.2 -48.0 3.0 11.6 12.7 49 49 A K G 3 S+ 0 0 176 1,-0.3 -1,-0.3 -3,-0.0 -2,-0.0 0.748 106.0 52.6 -59.4 -25.9 1.3 9.4 10.0 50 50 A D G < S+ 0 0 99 -3,-1.3 -45,-0.3 2,-0.1 -1,-0.3 0.405 82.8 111.3 -91.6 1.1 -1.6 11.9 9.7 51 51 A A < - 0 0 12 -3,-1.8 -47,-0.1 -4,-0.4 5,-0.0 -0.663 69.8-124.2 -83.9 124.3 0.6 15.0 9.1 52 52 A P >> - 0 0 29 0, 0.0 4,-1.7 0, 0.0 3,-0.9 -0.277 25.9-112.8 -59.8 149.8 0.5 16.5 5.6 53 53 A K H 3> S+ 0 0 138 1,-0.3 4,-1.5 2,-0.2 5,-0.1 0.846 118.0 57.9 -55.7 -29.9 3.9 16.8 3.9 54 54 A E H 3> S+ 0 0 32 -53,-0.3 4,-1.2 1,-0.2 -1,-0.3 0.824 103.9 49.8 -71.1 -34.8 3.6 20.6 4.1 55 55 A L H <> S+ 0 0 0 -3,-0.9 4,-1.4 1,-0.2 -1,-0.2 0.851 110.5 52.0 -72.0 -33.8 3.2 20.5 7.9 56 56 A L H X S+ 0 0 34 -4,-1.7 4,-2.2 1,-0.2 -2,-0.2 0.795 106.1 53.1 -72.3 -29.6 6.3 18.3 8.0 57 57 A Q H X S+ 0 0 93 -4,-1.5 4,-1.5 2,-0.2 -1,-0.2 0.819 107.8 51.5 -73.4 -33.1 8.3 20.7 5.9 58 58 A M H X S+ 0 0 45 -4,-1.2 4,-0.8 2,-0.2 5,-0.2 0.847 109.9 51.3 -70.5 -35.8 7.4 23.6 8.3 59 59 A L H >X S+ 0 0 10 -4,-1.4 3,-1.6 2,-0.2 4,-0.7 0.993 111.3 43.8 -64.1 -60.0 8.6 21.4 11.2 60 60 A E H 3< S+ 0 0 149 -4,-2.2 -1,-0.2 1,-0.3 -2,-0.2 0.800 114.6 51.3 -57.1 -30.9 12.0 20.5 9.7 61 61 A K H 3< S+ 0 0 174 -4,-1.5 -1,-0.3 -5,-0.2 -2,-0.2 0.658 126.9 24.8 -80.5 -16.7 12.4 24.2 8.7 62 62 A Q H << + 0 0 50 -3,-1.6 -3,-0.2 -4,-0.8 -2,-0.2 0.699 64.4 164.4-105.4 -86.1 11.6 25.2 12.2 63 63 A K < 0 0 174 -4,-0.7 -39,-0.1 -40,-0.4 -4,-0.1 0.949 360.0 360.0 60.5 51.3 12.3 22.5 14.8 64 64 A K 0 0 188 -41,-0.7 -1,-0.2 -5,-0.1 -2,-0.1 -0.728 360.0 360.0-129.7 360.0 12.1 25.0 17.7