==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=28-DEC-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER DNA-BINDING PROTEIN 28-MAR-05 2BNK . COMPND 2 MOLECULE: EARLY PROTEIN GP16.7; . SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS PHAGE PHI29; . AUTHOR A.ALBERT,J.L.ASENSIO,D.MUNOZ-ESPIN,C.GONZALEZ,J.A.HERMOSO, . 128 2 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 7891.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 90 70.3 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 8 6.2 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 19 14.8 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 61 47.7 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 2 1.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 2 1 1 0 0 0 0 0 0 2 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 65 A V 0 0 143 0, 0.0 2,-1.6 0, 0.0 26,-0.0 0.000 360.0 360.0 360.0-155.3 38.6 20.3 12.2 2 66 A N - 0 0 147 0, 0.0 2,-0.3 0, 0.0 0, 0.0 -0.721 360.0-166.4 -84.0 88.3 35.5 21.6 10.4 3 67 A L - 0 0 58 -2,-1.6 27,-0.0 1,-0.1 0, 0.0 -0.642 14.0-133.3 -96.2 140.3 33.5 18.6 11.4 4 68 A S - 0 0 50 -2,-0.3 4,-0.2 1,-0.1 -1,-0.1 0.272 23.9-108.0 -67.7-167.4 30.2 17.4 10.1 5 69 A A S S+ 0 0 85 2,-0.1 4,-0.3 3,-0.1 -1,-0.1 0.762 107.6 29.9-111.1 -35.3 27.2 16.2 12.1 6 70 A C S >> S+ 0 0 32 2,-0.2 4,-2.0 3,-0.1 3,-1.1 0.803 112.9 63.3 -95.5 -36.8 26.8 12.4 11.7 7 71 A E H >> S+ 0 0 6 1,-0.3 4,-2.9 2,-0.2 3,-0.7 0.959 99.6 57.9 -36.8 -58.2 30.6 11.9 11.3 8 72 A V H 3> S+ 0 0 55 1,-0.3 4,-1.1 2,-0.2 -1,-0.3 0.770 104.4 50.5 -48.7 -34.2 30.7 13.2 14.8 9 73 A A H <> S+ 0 0 37 -3,-1.1 4,-1.5 -4,-0.3 -1,-0.3 0.858 110.0 48.4 -74.2 -38.2 28.4 10.4 16.0 10 74 A V H <>S+ 0 0 1 -4,-1.6 5,-2.8 2,-0.2 3,-1.1 0.897 110.5 53.2 -63.1 -39.4 34.9 4.6 18.4 15 79 A E H ><5S+ 0 0 142 -4,-1.8 3,-0.9 1,-0.3 -1,-0.2 0.871 108.2 51.2 -64.4 -34.3 35.5 6.8 21.4 16 80 A Q H 3<5S+ 0 0 140 -4,-1.5 -1,-0.3 1,-0.2 -2,-0.2 0.525 110.3 48.3 -76.4 -12.1 33.0 4.6 23.2 17 81 A S T <<5S- 0 0 29 -3,-1.1 -1,-0.2 -4,-0.5 -2,-0.2 0.021 116.6-112.7-112.8 25.8 34.9 1.4 22.1 18 82 A N T < 5 + 0 0 137 -3,-0.9 2,-0.6 1,-0.2 -3,-0.2 0.785 67.3 147.5 36.5 42.2 38.2 2.8 23.2 19 83 A I < - 0 0 7 -5,-2.8 2,-0.6 -6,-0.1 -1,-0.2 -0.900 40.3-147.9 -96.5 118.3 39.5 3.0 19.6 20 84 A R - 0 0 114 -2,-0.6 -5,-0.0 -3,-0.1 0, 0.0 -0.751 16.2-144.3 -78.5 122.4 41.9 5.9 18.9 21 85 A I - 0 0 29 -2,-0.6 5,-0.1 -10,-0.1 2,-0.1 -0.782 17.4-116.7 -92.6 131.0 41.4 7.0 15.3 22 86 A P >> - 0 0 1 0, 0.0 4,-1.1 0, 0.0 3,-1.0 -0.370 16.8-131.1 -63.0 140.2 44.5 8.2 13.4 23 87 A S H 3> S+ 0 0 31 1,-0.3 4,-2.3 2,-0.2 5,-0.1 0.810 106.4 68.2 -69.9 -26.8 44.2 11.8 12.5 24 88 A D H 3> S+ 0 0 20 1,-0.2 4,-1.8 2,-0.2 -1,-0.3 0.875 100.9 47.8 -50.1 -43.8 45.2 10.8 9.0 25 89 A I H <> S+ 0 0 0 -3,-1.0 4,-1.4 2,-0.2 -1,-0.2 0.789 105.5 58.1 -71.0 -30.8 41.9 9.0 8.8 26 90 A I H >X S+ 0 0 30 -4,-1.1 4,-2.3 2,-0.2 3,-0.6 0.992 107.7 48.3 -59.5 -56.9 40.1 12.1 10.1 27 91 A E H 3X S+ 0 0 81 -4,-2.3 4,-1.6 1,-0.2 -2,-0.2 0.934 112.0 46.4 -39.4 -66.6 41.5 14.2 7.2 28 92 A D H 3< S+ 0 0 44 -4,-1.8 -1,-0.2 1,-0.2 -2,-0.2 0.785 111.3 55.3 -60.5 -22.2 40.6 11.7 4.5 29 93 A L H XX S+ 0 0 1 -4,-1.4 3,-2.5 -3,-0.6 4,-0.5 0.966 102.5 51.3 -76.6 -50.7 37.1 11.4 6.0 30 94 A V H >< S+ 0 0 28 -4,-2.3 3,-1.1 1,-0.3 -2,-0.2 0.849 106.2 59.3 -50.6 -36.7 36.2 15.2 6.0 31 95 A N T 3< S+ 0 0 118 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.415 94.8 65.5 -71.1 -1.3 37.2 15.2 2.2 32 96 A Q T <4 S- 0 0 89 -3,-2.5 -1,-0.2 2,-0.1 -2,-0.2 0.670 82.3-157.2 -98.9 -14.7 34.6 12.5 1.5 33 97 A R << - 0 0 198 -3,-1.1 2,-0.1 -4,-0.5 -3,-0.1 0.835 26.7-178.4 41.9 40.5 31.7 14.8 2.4 34 98 A L - 0 0 37 -5,-0.4 -27,-0.2 1,-0.1 -1,-0.2 -0.413 23.1-149.0 -71.6 145.7 29.7 11.6 3.0 35 99 A Q + 0 0 158 -2,-0.1 -1,-0.1 -3,-0.1 3,-0.1 0.461 63.9 49.9-102.3 -3.0 26.1 11.9 4.0 36 100 A S - 0 0 50 1,-0.1 -30,-0.1 -30,-0.0 -29,-0.0 0.249 69.4-124.4-110.4-135.4 25.3 9.0 6.3 37 101 A E S > S+ 0 0 90 -28,-0.1 4,-2.6 -27,-0.0 5,-0.2 0.167 114.2 49.5-148.7 -45.7 26.5 7.1 9.3 38 102 A Q H > S+ 0 0 64 2,-0.2 4,-2.1 1,-0.2 5,-0.2 0.896 113.0 49.8 -65.0 -39.1 26.6 3.8 7.6 39 103 A E H > S+ 0 0 67 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.948 112.6 46.7 -62.0 -49.0 28.5 5.5 4.9 40 104 A V H > S+ 0 0 0 2,-0.2 4,-3.0 1,-0.2 3,-0.2 0.930 113.4 46.5 -58.6 -52.9 31.0 7.1 7.4 41 105 A L H X S+ 0 0 0 -4,-2.6 4,-3.0 1,-0.3 5,-0.2 0.924 109.7 52.8 -62.2 -48.5 31.6 4.0 9.4 42 106 A N H X S+ 0 0 81 -4,-2.1 4,-1.2 -5,-0.2 -1,-0.3 0.828 113.6 47.6 -56.1 -31.3 32.2 1.8 6.3 43 107 A Y H X S+ 0 0 37 -4,-1.5 4,-1.5 -3,-0.2 3,-0.3 0.959 110.1 46.1 -78.1 -55.2 34.7 4.4 5.3 44 108 A I H >X S+ 0 0 1 -4,-3.0 4,-2.4 1,-0.2 3,-0.9 0.952 113.4 55.3 -46.2 -47.3 36.7 4.9 8.5 45 109 A E H 3X S+ 0 0 35 -4,-3.0 4,-2.5 1,-0.3 -1,-0.2 0.838 104.0 50.6 -58.7 -39.0 36.7 1.0 8.7 46 110 A T H 3X S+ 0 0 85 -4,-1.2 4,-1.6 -3,-0.3 -1,-0.3 0.801 113.0 49.8 -63.2 -28.8 38.2 0.7 5.2 47 111 A Q H > S+ 0 0 33 2,-0.2 4,-2.0 3,-0.1 3,-1.6 0.847 113.6 62.9 -92.7 -42.3 68.6 12.4 12.2 72 71 B E H >> S+ 0 0 5 1,-0.3 4,-3.1 27,-0.2 3,-0.7 0.944 99.6 57.5 -31.7 -61.1 64.9 11.8 12.6 73 72 B V H 3> S+ 0 0 55 1,-0.3 4,-1.1 -4,-0.2 -1,-0.3 0.766 104.6 51.3 -47.1 -33.4 64.6 13.2 9.0 74 73 B A H <> S+ 0 0 36 -3,-1.6 4,-1.6 -4,-0.3 -1,-0.3 0.866 110.0 47.1 -75.8 -39.8 67.0 10.4 7.9 75 74 B V H <>S+ 0 0 1 -4,-1.6 5,-3.1 2,-0.2 3,-0.9 0.878 110.4 52.6 -66.4 -38.3 60.5 4.6 5.4 80 79 B E H ><5S+ 0 0 143 -4,-1.6 3,-0.9 1,-0.3 -2,-0.2 0.863 108.5 51.6 -65.6 -33.6 59.8 6.8 2.4 81 80 B Q T 3<5S+ 0 0 136 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.543 110.0 48.7 -76.2 -13.3 62.4 4.6 0.6 82 81 B S T < 5S- 0 0 28 -3,-0.9 -1,-0.2 -4,-0.5 -2,-0.2 0.018 116.8-112.9-111.3 26.2 60.5 1.4 1.7 83 82 B N T < 5 + 0 0 136 -3,-0.9 2,-0.6 1,-0.2 -3,-0.2 0.789 67.8 147.1 36.6 41.4 57.2 2.8 0.6 84 83 B I < - 0 0 7 -5,-3.1 2,-0.5 -6,-0.1 -1,-0.2 -0.904 40.7-148.0 -98.5 117.8 55.9 3.0 4.2 85 84 B R - 0 0 115 -2,-0.6 -5,-0.0 -3,-0.1 0, 0.0 -0.745 15.8-144.4 -78.6 123.1 53.5 5.9 4.9 86 85 B I - 0 0 29 -2,-0.5 5,-0.1 -10,-0.1 -31,-0.0 -0.804 17.6-117.2 -93.6 128.7 54.1 7.0 8.5 87 86 B P >> - 0 0 1 0, 0.0 4,-1.2 0, 0.0 3,-0.8 -0.315 17.0-130.5 -60.8 141.4 50.9 8.2 10.4 88 87 B S H 3> S+ 0 0 31 1,-0.3 4,-2.2 2,-0.2 5,-0.1 0.814 106.2 68.5 -70.9 -26.1 51.2 11.8 11.3 89 88 B D H 3> S+ 0 0 19 1,-0.2 4,-1.9 2,-0.2 -1,-0.3 0.890 100.8 48.4 -50.4 -44.4 50.2 10.8 14.9 90 89 B I H <> S+ 0 0 0 -3,-0.8 4,-1.6 2,-0.2 -1,-0.2 0.822 105.4 57.6 -68.7 -32.3 53.6 9.1 15.1 91 90 B I H >X S+ 0 0 30 -4,-1.2 4,-2.3 2,-0.2 3,-0.6 0.993 107.6 48.6 -58.5 -58.4 55.3 12.2 13.7 92 91 B E H 3X S+ 0 0 82 -4,-2.2 4,-1.6 1,-0.3 -2,-0.2 0.920 112.5 45.8 -35.9 -67.3 53.8 14.2 16.7 93 92 B D H 3< S+ 0 0 46 -4,-1.9 -1,-0.3 1,-0.2 -2,-0.2 0.798 111.3 55.9 -59.4 -24.6 54.8 11.7 19.4 94 93 B L H XX S+ 0 0 1 -4,-1.6 3,-2.6 -3,-0.6 4,-0.6 0.971 102.7 50.2 -75.3 -51.8 58.3 11.5 17.8 95 94 B V H >< S+ 0 0 27 -4,-2.3 3,-1.1 1,-0.3 -1,-0.2 0.855 106.6 59.7 -50.4 -36.8 59.2 15.2 17.9 96 95 B N T 3< S+ 0 0 115 -4,-1.6 -1,-0.3 1,-0.2 -2,-0.2 0.405 94.7 65.4 -71.0 -0.0 58.2 15.1 21.6 97 96 B Q T <4 S- 0 0 89 -3,-2.6 -1,-0.2 2,-0.1 -2,-0.2 0.676 82.2-157.7 -99.0 -15.4 60.8 12.5 22.3 98 97 B R << - 0 0 201 -3,-1.1 2,-0.1 -4,-0.6 -3,-0.1 0.823 27.1-179.1 43.4 38.3 63.7 14.8 21.5 99 98 B L - 0 0 37 -5,-0.4 -27,-0.2 1,-0.1 -1,-0.2 -0.404 23.7-149.0 -73.6 145.7 65.7 11.6 20.8 100 99 B Q + 0 0 160 -2,-0.1 -1,-0.1 -3,-0.1 3,-0.1 0.505 63.2 52.1-101.3 -6.8 69.3 11.9 19.8 101 100 B S - 0 0 50 1,-0.1 -30,-0.1 -30,-0.0 -29,-0.1 0.244 69.1-125.2-106.6-140.6 70.1 8.9 17.6 102 101 B E S > S+ 0 0 90 -28,-0.1 4,-2.8 -31,-0.1 5,-0.2 0.241 114.7 48.3-139.6 -46.6 69.0 7.1 14.5 103 102 B Q H > S+ 0 0 67 2,-0.2 4,-2.4 1,-0.2 5,-0.2 0.906 113.0 50.8 -61.7 -41.0 68.8 3.8 16.2 104 103 B E H > S+ 0 0 65 2,-0.2 4,-1.5 1,-0.2 -1,-0.2 0.934 112.4 46.0 -60.7 -47.4 66.8 5.5 19.0 105 104 B V H > S+ 0 0 0 2,-0.2 4,-3.0 1,-0.2 5,-0.2 0.944 113.8 46.7 -61.0 -53.1 64.4 7.1 16.5 106 105 B L H X S+ 0 0 1 -4,-2.8 4,-2.9 1,-0.3 5,-0.2 0.911 110.4 51.8 -61.1 -46.9 63.8 4.0 14.4 107 106 B N H X S+ 0 0 79 -4,-2.4 4,-1.4 -5,-0.2 -1,-0.3 0.835 113.6 48.3 -59.5 -31.2 63.2 1.8 17.5 108 107 B Y H X S+ 0 0 37 -4,-1.5 4,-1.6 -3,-0.2 -2,-0.2 0.959 110.1 45.9 -75.2 -55.2 60.7 4.4 18.6 109 108 B I H >X S+ 0 0 1 -4,-3.0 4,-2.6 1,-0.2 3,-0.8 0.956 113.0 55.2 -47.5 -48.1 58.7 4.8 15.3 110 109 B E H 3X S+ 0 0 37 -4,-2.9 4,-2.6 1,-0.3 -1,-0.2 0.857 104.1 50.5 -58.1 -40.7 58.7 1.0 15.2 111 110 B T H 3X S+ 0 0 85 -4,-1.4 4,-1.7 -3,-0.2 -1,-0.3 0.828 113.0 50.2 -61.6 -30.8 57.2 0.7 18.6 112 111 B Q H X S+ 0 0 76 -4,-1.8 4,-1.0 -5,-0.2 3,-0.6 0.858 109.7 51.3 -65.6 -38.8 47.1 -2.9 16.9 119 118 B E H 3< S+ 0 0 6 -4,-1.8 -1,-0.2 1,-0.3 -2,-0.2 0.787 107.9 52.2 -72.2 -29.5 44.7 0.1 17.4 120 119 B N T 3< S+ 0 0 4 -4,-1.7 -1,-0.3 1,-0.2 -68,-0.2 0.586 107.4 56.3 -81.9 -10.2 43.5 -0.2 13.8 121 120 B Q T <4 S+ 0 0 94 -3,-0.6 -2,-0.2 -4,-0.4 -1,-0.2 0.757 77.3 113.4 -91.2 -29.1 42.8 -3.9 14.5 122 121 B K S < S- 0 0 99 -4,-1.0 2,-0.5 1,-0.1 -103,-0.0 -0.026 73.6-116.1 -44.6 145.9 40.5 -3.4 17.5 123 122 B K - 0 0 197 -106,-0.1 2,-0.3 1,-0.0 -1,-0.1 -0.819 27.8-128.2 -93.8 128.8 37.0 -4.4 16.7 124 123 B L - 0 0 7 -2,-0.5 2,-0.6 -3,-0.1 -110,-0.1 -0.561 6.3-140.1 -78.0 138.8 34.4 -1.7 16.8 125 124 B Y - 0 0 155 -2,-0.3 2,-0.3 -112,-0.3 -109,-0.1 -0.875 31.7-173.7 -94.5 120.1 31.2 -1.9 18.8 126 125 B R - 0 0 99 -2,-0.6 -116,-0.0 1,-0.0 -112,-0.0 -0.899 43.0-158.4-125.0 138.4 28.2 -0.4 16.7 127 126 B G S S+ 0 0 72 -2,-0.3 -2,-0.0 2,-0.0 -1,-0.0 -0.273 96.0 59.2 -92.1 43.5 24.5 0.5 17.1 128 127 B S 0 0 46 -91,-0.0 -90,-0.1 -90,-0.0 -3,-0.0 0.468 360.0 360.0-131.8-102.0 24.7 0.2 13.3 129 128 B L 0 0 172 -91,-0.1 -2,-0.0 0, 0.0 -1,-0.0 -0.546 360.0 360.0 84.6 360.0 25.6 -2.8 11.0