==== Secondary Structure Definition by the program DSSP, updated CMBI version by ElmK / April 1,2000 ==== DATE=25-NOV-2009 . REFERENCE W. KABSCH AND C.SANDER, BIOPOLYMERS 22 (1983) 2577-2637 . HEADER TRANSCRIPTION REGULATION 27-SEP-95 1BOR . COMPND 2 MOLECULE: TRANSCRIPTION FACTOR PML; . SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; . AUTHOR K.L.B.BORDEN,P.S.FREEMONT . 56 1 0 0 0 TOTAL NUMBER OF RESIDUES, NUMBER OF CHAINS, NUMBER OF SS-BRIDGES(TOTAL,INTRACHAIN,INTERCHAIN) . 3764.0 ACCESSIBLE SURFACE OF PROTEIN (ANGSTROM**2) . 18 32.1 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(J) , SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS IN PARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS IN ANTIPARALLEL BRIDGES, SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-5), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-2), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I-1), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+0), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+1), SAME NUMBER PER 100 RESIDUES . 7 12.5 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+2), SAME NUMBER PER 100 RESIDUES . 2 3.6 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+3), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+4), SAME NUMBER PER 100 RESIDUES . 0 0.0 TOTAL NUMBER OF HYDROGEN BONDS OF TYPE O(I)-->H-N(I+5), SAME NUMBER PER 100 RESIDUES . 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 *** HISTOGRAMS OF *** . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 RESIDUES PER ALPHA HELIX . 1 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 PARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 ANTIPARALLEL BRIDGES PER LADDER . 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 LADDERS PER SHEET . # RESIDUE AA STRUCTURE BP1 BP2 ACC N-H-->O O-->H-N N-H-->O O-->H-N TCO KAPPA ALPHA PHI PSI X-CA Y-CA Z-CA 1 1 A E 0 0 223 0, 0.0 2,-0.3 0, 0.0 4,-0.0 0.000 360.0 360.0 360.0 -39.0 4.4 -0.2 14.4 2 2 A E - 0 0 134 21,-0.0 2,-1.2 0, 0.0 23,-0.2 -0.916 360.0 -14.8-124.5 152.1 2.9 2.9 12.7 3 3 A E S S+ 0 0 99 -2,-0.3 21,-0.2 21,-0.1 37,-0.0 -0.372 112.9 80.4 59.7 -94.9 1.6 3.4 9.1 4 4 A F + 0 0 89 -2,-1.2 3,-0.1 19,-1.0 18,-0.1 -0.146 52.3 130.9 -42.5 115.4 3.3 0.3 7.6 5 5 A Q + 0 0 127 1,-0.1 2,-0.3 34,-0.0 -1,-0.2 0.238 52.9 51.7-157.2 16.0 0.8 -2.4 8.6 6 6 A F + 0 0 57 16,-0.1 -1,-0.1 1,-0.1 20,-0.1 -0.958 34.9 179.2-151.1 170.4 0.0 -4.5 5.5 7 7 A L S S+ 0 0 86 -2,-0.3 9,-0.8 2,-0.1 21,-0.1 0.120 77.7 53.2-160.9 23.3 1.5 -6.4 2.6 8 8 A R S S- 0 0 122 7,-0.2 9,-2.1 8,-0.2 10,-0.4 0.537 100.9 -69.9-127.3 -75.5 -1.4 -7.8 0.6 9 9 A C - 0 0 0 7,-0.2 4,-0.2 1,-0.2 -2,-0.1 -0.967 33.3-100.1-178.2 165.2 -4.1 -5.3 -0.5 10 10 A Q S S- 0 0 52 -2,-0.3 -1,-0.2 2,-0.2 3,-0.2 0.998 110.2 -16.0 -62.8 -64.8 -6.9 -3.1 0.7 11 11 A Q S S+ 0 0 140 1,-0.2 2,-2.2 18,-0.1 -2,-0.1 0.800 136.0 56.0-108.7 -56.4 -9.8 -5.4 -0.2 12 12 A C S S+ 0 0 72 17,-0.1 2,-1.1 -4,-0.1 3,-0.3 -0.468 72.1 179.6 -78.3 77.0 -8.5 -8.1 -2.6 13 13 A Q + 0 0 106 -2,-2.2 -4,-0.1 -4,-0.2 -5,-0.1 -0.664 32.0 119.1 -83.5 103.0 -5.7 -9.3 -0.3 14 14 A A S S- 0 0 81 -2,-1.1 2,-0.2 -6,-0.3 -1,-0.2 0.594 84.9 -14.2-126.3 -63.9 -3.9 -12.1 -2.2 15 15 A E S S- 0 0 165 -3,-0.3 -7,-0.2 -7,-0.2 -2,-0.0 -0.622 99.1 -76.4-150.0 86.2 -0.2 -11.3 -2.8 16 16 A A - 0 0 14 -9,-0.8 -7,-0.2 -2,-0.2 13,-0.2 0.750 50.6-177.6 21.3 99.5 0.8 -7.6 -2.3 17 17 A K B +a 29 0A 122 -9,-2.1 13,-0.7 11,-1.7 12,-0.3 0.530 63.4 71.5 -98.2 -6.1 -0.6 -5.9 -5.4 18 18 A C + 0 0 0 10,-1.6 37,-0.3 9,-0.5 -1,-0.1 -0.911 51.0 180.0-115.6 111.1 0.8 -2.5 -4.5 19 19 A P + 0 0 47 0, 0.0 -1,-0.1 0, 0.0 8,-0.1 0.446 41.8 133.0 -82.8 -2.6 4.6 -2.0 -4.8 20 20 A K S S- 0 0 0 30,-0.1 30,-0.3 2,-0.1 35,-0.2 -0.037 74.4 -67.2 -47.5 154.1 4.2 1.6 -3.6 21 21 A L - 0 0 30 28,-1.2 5,-0.4 25,-0.6 29,-0.1 0.132 43.4-137.4 -38.7 160.4 6.6 2.7 -0.8 22 22 A L S > S+ 0 0 20 3,-0.1 3,-0.6 1,-0.1 -16,-0.1 0.377 82.3 85.4-111.6 7.4 6.1 1.0 2.5 23 23 A P T 3 S+ 0 0 71 0, 0.0 -19,-1.0 0, 0.0 2,-0.4 0.818 97.3 42.1 -76.7 -30.2 6.4 3.8 5.1 24 24 A C T 3 S- 0 0 27 -21,-0.2 -21,-0.1 2,-0.0 19,-0.1 -0.485 121.8 -96.3-113.9 63.2 2.8 4.8 4.8 25 25 A L S < S+ 0 0 2 -3,-0.6 3,-0.2 -2,-0.4 10,-0.2 0.830 77.8 144.7 27.2 57.2 1.1 1.4 4.7 26 26 A H + 0 0 0 -5,-0.4 -1,-0.2 1,-0.2 -22,-0.1 -0.343 30.6 98.0-121.0 59.5 1.0 1.5 0.9 27 27 A T + 0 0 0 -5,-0.1 -9,-0.5 -8,-0.1 -10,-0.3 -0.193 57.0 109.5-127.8 34.0 1.6 -2.1 -0.1 28 28 A L S S- 0 0 2 -11,-0.2 -11,-1.7 -3,-0.2 -10,-1.6 0.769 84.5 -61.5 -81.3-109.7 -2.1 -2.7 -0.7 29 29 A C B >> -a 17 0A 7 -12,-0.3 3,-2.3 -13,-0.2 2,-1.3 -0.758 35.1-130.8-152.7 103.9 -3.2 -3.1 -4.3 30 30 A S T 34 S+ 0 0 77 -13,-0.7 4,-0.1 -2,-0.3 -21,-0.0 -0.253 100.1 46.7 -51.8 89.5 -2.9 -0.5 -7.1 31 31 A G T 34 S+ 0 0 75 -2,-1.3 -1,-0.3 2,-0.3 3,-0.1 0.138 120.6 24.3 161.7 -28.1 -6.5 -0.8 -8.2 32 32 A C T <4 S+ 0 0 39 -3,-2.3 2,-0.4 1,-0.1 -2,-0.2 0.322 103.9 80.4-139.7 3.6 -8.8 -0.7 -5.2 33 33 A L < + 0 0 7 -4,-1.1 -2,-0.3 -23,-0.1 -1,-0.1 -0.928 31.4 144.5-119.9 142.5 -6.8 1.1 -2.5 34 34 A E S S- 0 0 65 -2,-0.4 8,-0.1 -4,-0.1 6,-0.1 -0.249 86.2 -69.5-169.2 65.0 -6.2 4.8 -2.0 35 35 A A S S+ 0 0 21 7,-0.2 7,-0.6 -10,-0.2 5,-0.2 0.822 103.9 123.3 47.5 25.5 -6.1 5.8 1.7 36 36 A S S S- 0 0 72 5,-0.1 -1,-0.2 1,-0.1 -3,-0.1 0.715 92.0 -19.3 -89.0 -21.6 -9.8 4.9 1.5 37 37 A G S S+ 0 0 62 0, 0.0 -1,-0.1 0, 0.0 -2,-0.0 0.202 120.3 74.8-176.1 37.8 -9.6 2.2 4.2 38 38 A M S S- 0 0 18 2,-0.2 -13,-0.0 -32,-0.0 -12,-0.0 0.643 109.2 -77.4-125.5 -33.6 -6.1 0.9 4.9 39 39 A Q S S+ 0 0 126 1,-0.2 -3,-0.1 -15,-0.1 -4,-0.1 0.507 86.4 106.4 132.2 65.7 -4.4 3.8 6.9 40 40 A C - 0 0 24 -5,-0.2 2,-1.1 -6,-0.1 -1,-0.2 -0.987 69.9-104.3-163.4 154.4 -3.3 6.7 4.7 41 41 A P S S- 0 0 101 0, 0.0 -6,-0.1 0, 0.0 -5,-0.1 -0.702 81.6 -64.3 -85.4 93.3 -4.3 10.3 3.7 42 42 A I S S+ 0 0 111 -2,-1.1 -7,-0.2 -7,-0.6 -6,-0.1 0.816 79.9 170.8 30.9 38.3 -5.9 10.1 0.3 43 43 A C + 0 0 21 2,-0.1 -1,-0.1 -19,-0.1 4,-0.1 0.914 22.5 133.7 -38.3 -78.5 -2.4 8.9 -0.7 44 44 A Q + 0 0 112 1,-0.2 -10,-0.1 2,-0.1 -1,-0.1 0.802 58.5 65.3 24.1 71.9 -3.3 7.8 -4.3 45 45 A A S S+ 0 0 74 4,-0.1 -1,-0.2 0, 0.0 4,-0.1 0.076 87.7 50.0-171.1 -64.4 -0.3 9.5 -6.0 46 46 A P S S+ 0 0 49 0, 0.0 -25,-0.6 0, 0.0 3,-0.3 0.066 72.7 122.4 -81.0 25.7 3.2 8.2 -5.1 47 47 A W S S+ 0 0 21 1,-0.2 -17,-0.1 -27,-0.2 -3,-0.0 0.899 74.7 45.4 -55.7 -43.6 1.9 4.6 -5.9 48 48 A P S S+ 0 0 121 0, 0.0 2,-0.7 0, 0.0 -1,-0.2 0.763 105.5 69.0 -74.2 -25.2 4.6 4.1 -8.6 49 49 A L + 0 0 130 -3,-0.3 -28,-1.2 -4,-0.1 2,-0.3 -0.828 66.7 168.7 -97.8 117.4 7.4 5.5 -6.4 50 50 A G - 0 0 33 -2,-0.7 -30,-0.1 -30,-0.3 3,-0.1 -0.866 23.1-156.0-124.1 160.2 8.2 3.3 -3.4 51 51 A A S S- 0 0 73 -2,-0.3 2,-1.0 1,-0.1 -1,-0.2 0.649 76.1 -10.9-100.2-100.0 11.1 3.3 -0.8 52 52 A D S S+ 0 0 129 3,-0.0 -1,-0.1 2,-0.0 3,-0.1 -0.715 95.1 126.9-104.6 85.6 12.0 0.0 1.0 53 53 A T - 0 0 38 -2,-1.0 -32,-0.1 -34,-0.1 -3,-0.0 -0.738 66.7-112.7-130.1-179.9 9.1 -2.3 0.1 54 54 A P - 0 0 77 0, 0.0 -1,-0.1 0, 0.0 -33,-0.1 0.894 46.6-174.7 -81.7 -47.3 8.6 -5.8 -1.4 55 55 A A 0 0 47 -37,-0.3 -37,-0.1 -35,-0.2 -35,-0.0 -0.141 360.0 360.0 74.2-178.4 6.9 -4.7 -4.7 56 56 A L 0 0 146 -39,-0.1 -39,-0.1 0, 0.0 -40,-0.1 -0.937 360.0 360.0-147.1 360.0 5.5 -7.3 -7.1